Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0021277

Physical Location & Seq

Genomic Coordinates Forward (+)

6014306 .. 6014923

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTTGGTCCAAGAACGCAACGGACCCAAATCCCCAAAATACGCTCACTCCAACTCTCACTCTCAGAGCAGAGCATCCCTTTCCTTCGCTCCGAATCTCGATTTCTCCACATGGGTTTCCGAGAATCTGTACAAAATTGTCACCGTCGTGCTTCTGATCGCCACCGTCGCCGCCCTTTTCGTCCTCCGTAATATTGGCGACACCGCCGCCTTGCTCTGCTTCGAGACCCAGGCCCAGAACCTCGAGAAGATTCGGATGCCGCAGCTTGAATCCACCGTCAAGACAATCTCCGACACGTCGTCTCCCTACGCCAGCTTCCGATCTGAGAAGTGGATTGTCGTTTCCGTTTCCGATTACCCGACCGACTCGCTCAAGAAGCTCGTGAAGCTCAAGGGGTGGCAGGTCCTGGCAATCGGGAACTCCAAAACGCCGTCGGATTGGAGCCTCAAAGGTGCTATCTTTCTGTCCCTTGAACAACAAGCTCAATTGGGTTTTAGGGTTTTGGAGTACTTGCCTTATGATTCTTATGTTAGGAAGAGTGTGGGTTACTTGTTTGCTATCCAGCATGGCGCGAAGATGATCTTCGACGCTGATCGATCGCGGAGAGGTGGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009832 GO:0009889 GO:0009987 GO:0010383 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016043 GO:0016051 GO:0019222 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0051128 GO:0051273 GO:0051274 GO:0052324 GO:0052541 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098791 GO:1901576 GO:1903338 GO:2000112 GO:2001006 GO:2001009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STELLO

Protein Analysis

206

Amino Acids

22.99

Weight (kDa)

9.49

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021277)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g07420 pycom12g06350 pycom14g06160
rosa_samantha	Rh4AG272800 Rh4BG278500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	391
AccII	CGCG	2 cut(s)	572, 601
AciI	CCGC	5 cut(s)	171, 204, 207, 260, 601
AfaI	GTAC	2 cut(s)	131, 509
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	269, 473
AhdI	GACNNNNNGTC	1 cut(s)	298
AjiI	CACGTC	1 cut(s)	297
AjnI	CCWGG	2 cut(s)	228, 405
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	5 cut(s)	265, 315, 379, 388, 482
AluI	AGCT	5 cut(s)	265, 315, 379, 388, 482
Alw26I	GTCTC	2 cut(s)	218, 306
AlwNI	CAGNNNCTG	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	572
AspS9I	GGNCC	4 cut(s)	7, 23, 232, 403
AsuHPI	GGTGA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	3 cut(s)	7, 23, 403
BauI	CACGAG	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	415
BciT130I	CCWGG	2 cut(s)	230, 407
BcoDI	GTCTC	2 cut(s)	218, 306
BfuAI	ACCTGC	1 cut(s)	391
BisI	GCNGC	4 cut(s)	171, 207, 260, 263
BlsI	GCNGC	4 cut(s)	172, 208, 261, 264
BmcAI	AGTACT	1 cut(s)	509
Bme1390I	CCNGG	2 cut(s)	230, 407
Bme18I	GGWCC	3 cut(s)	7, 23, 403
BmeRI	GACNNNNNGTC	1 cut(s)	298
BmeT110I	CYCGRG	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	297
BmgT120I	GGNCC	4 cut(s)	7, 23, 232, 403
BmiI	GGNNCC	2 cut(s)	25, 443
BmrFI	CCNGG	2 cut(s)	230, 407
BmsI	GCATC	2 cut(s)	83, 246
BpuEI	CTTGAG	2 cut(s)	356, 374
Bsa29I	ATCGAT	1 cut(s)	595
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	228
BsaXI	ACNNNNNCTCC	5 cut(s)	32, 62, 286, 316, 595
BseBI	CCWGG	2 cut(s)	230, 407
BseCI	ATCGAT	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	74, 261
BseMII	CTCAG	2 cut(s)	77, 315
BseXI	GCAGC	1 cut(s)	274
Bsh1236I	CGCG	2 cut(s)	572, 601
Bsh1285I	CGRYCG	2 cut(s)	363, 599
BshFI	GGCC	1 cut(s)	233
BshVI	ATCGAT	1 cut(s)	595
BsiEI	CGRYCG	2 cut(s)	363, 599
BsiHKCI	CYCGRG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	451
BsmAI	GTCTC	2 cut(s)	218, 306
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	242
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	5 cut(s)	156, 320, 579, 592, 596
BspACI	CCGC	5 cut(s)	171, 204, 207, 260, 601
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	2 cut(s)	76, 316
BspDI	ATCGAT	1 cut(s)	595
BspFNI	CGCG	2 cut(s)	572, 601
BspLI	GGNNCC	2 cut(s)	25, 443
BspMI	ACCTGC	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	218
BsrGI	TGTACA	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	5 cut(s)	156, 320, 579, 592, 596
BssSI	CACGAG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	2 cut(s)	230, 407
Bst4CI	ACNGT	3 cut(s)	145, 166, 277
Bst6I	CTCTTC	1 cut(s)	530
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	2 cut(s)	63, 324
BstF5I	GGATG	2 cut(s)	74, 261
BstFNI	CGCG	2 cut(s)	572, 601
BstHHI	GCGC	1 cut(s)	572
BstKTI	GATC	5 cut(s)	159, 323, 582, 595, 599
BstMAI	GTCTC	2 cut(s)	218, 306
BstMBI	GATC	5 cut(s)	156, 320, 579, 592, 596
BstMCI	CGRYCG	2 cut(s)	363, 599
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 376, 385
BstNI	CCWGG	2 cut(s)	230, 407
BstSCI	CCNGG	2 cut(s)	228, 405
BstUI	CGCG	2 cut(s)	572, 601
BstV1I	GCAGC	1 cut(s)	274
Bsu15I	ATCGAT	1 cut(s)	595
BsuRI	GGCC	1 cut(s)	233
BsuTUI	ATCGAT	1 cut(s)	595
BtrI	CACGTC	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	74, 261
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	1 cut(s)	313
CaiI	CAGNNNCTG	1 cut(s)	406
CfoI	GCGC	1 cut(s)	572
Cfr13I	GGNCC	4 cut(s)	7, 23, 232, 403
ClaI	ATCGAT	1 cut(s)	595
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	2 cut(s)	130, 508
CviAII	CATG	2 cut(s)	111, 566
CviJI	RGCY	7 cut(s)	233, 265, 315, 379, 388, 444, 482
CviKI_1	RGCY	7 cut(s)	233, 265, 315, 379, 388, 444, 482
CviQI	GTAC	2 cut(s)	130, 508
DdeI	CTNAG	2 cut(s)	63, 324
DpnI	GATC	5 cut(s)	158, 322, 581, 594, 598
DpnII	GATC	5 cut(s)	156, 320, 579, 592, 596
DriI	GACNNNNNGTC	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	530
Eam1105I	GACNNNNNGTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	530
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	3 cut(s)	7, 23, 403
Eco88I	CYCGRG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	228, 405
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	2 cut(s)	114, 569
FaiI	YATR	4 cut(s)	112, 519, 528, 567
FalI	AAGNNNNNCTT	2 cut(s)	566, 598
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	2 cut(s)	110, 565
Fnu4HI	GCNGC	4 cut(s)	171, 207, 260, 263
FokI	GGATG	2 cut(s)	61, 268
Fsp4HI	GCNGC	4 cut(s)	171, 207, 260, 263
GlaI	GCGC	1 cut(s)	571
GluI	GCNGC	4 cut(s)	171, 207, 260, 263
HaeIII	GGCC	1 cut(s)	233
HgaI	GACGC	1 cut(s)	596
HhaI	GCGC	1 cut(s)	572
Hin1II	CATG	2 cut(s)	114, 569
Hin6I	GCGC	1 cut(s)	570
HinP1I	GCGC	1 cut(s)	570
HinfI	GANTC	6 cut(s)	94, 124, 250, 269, 365, 521
HphI	GGTGA	1 cut(s)	133
Hpy188III	TCNNGA	7 cut(s)	98, 223, 244, 280, 373, 382, 415
Hpy99I	CGWCG	5 cut(s)	149, 170, 301, 436, 590
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	3 cut(s)	145, 166, 277
HpyCH4IV	ACGT	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 376, 385
HpyF3I	CTNAG	2 cut(s)	63, 324
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	114, 569
HspAI	GCGC	1 cut(s)	570
Kzo9I	GATC	5 cut(s)	156, 320, 579, 592, 596
LmnI	GCTCC	2 cut(s)	94, 441
LpnPI	CCDG	8 cut(s)	215, 242, 248, 325, 386, 392, 419, 575
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	2 cut(s)	83, 246
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	139, 545
MalI	GATC	5 cut(s)	158, 322, 581, 594, 598
MboI	GATC	5 cut(s)	156, 320, 579, 592, 596
MboII	GAAGA	4 cut(s)	259, 547, 574, 586
MfeI	CAATTG	1 cut(s)	485
MluCI	AATT	2 cut(s)	135, 485
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	3 cut(s)	75, 315, 414
MnlI	CCTC	4 cut(s)	194, 251, 455, 599
MslI	CAYNNNNRTG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	230, 407
MunI	CAATTG	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	230, 407
MvnI	CGCG	2 cut(s)	572, 601
MwoI	GCNNNNNNNGC	3 cut(s)	167, 376, 385
NdeII	GATC	5 cut(s)	156, 320, 579, 592, 596
NlaIII	CATG	2 cut(s)	114, 569
NlaIV	GGNNCC	2 cut(s)	25, 443
NmuCI	GTSAC	1 cut(s)	139
OliI	CACNNNNGTG	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	242
PfeI	GAWTC	5 cut(s)	94, 124, 250, 269, 521
PkrI	GCNGC	4 cut(s)	172, 208, 261, 264
Ple19I	CGATCG	1 cut(s)	599
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PpuMI	RGGWCCY	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	228, 405
PspGI	CCWGG	2 cut(s)	228, 405
PspN4I	GGNNCC	2 cut(s)	25, 443
PspPI	GGNCC	4 cut(s)	7, 23, 232, 403
PspPPI	RGGWCCY	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	406
PvuI	CGATCG	1 cut(s)	599
RsaI	GTAC	2 cut(s)	131, 509
RsaNI	GTAC	2 cut(s)	130, 508
RseI	CAYNNNNRTG	1 cut(s)	146
SatI	GCNGC	4 cut(s)	171, 207, 260, 263
Sau3AI	GATC	5 cut(s)	156, 320, 579, 592, 596
Sau96I	GGNCC	4 cut(s)	7, 23, 232, 403
ScaI	AGTACT	1 cut(s)	509
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	2 cut(s)	230, 407
SfaNI	GCATC	2 cut(s)	83, 246
Sfr274I	CTCGAG	1 cut(s)	242
SinI	GGWCC	3 cut(s)	7, 23, 403
SlaI	CTCGAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	3 cut(s)	242, 371, 389
SmoI	CTYRAG	3 cut(s)	242, 371, 389
Sse9I	AATT	2 cut(s)	135, 485
SsiI	CCGC	5 cut(s)	171, 204, 207, 260, 601
SspI	AATATT	1 cut(s)	193
StyD4I	CCNGG	2 cut(s)	228, 405
TaaI	ACNGT	3 cut(s)	145, 166, 277
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	5 cut(s)	99, 222, 243, 585, 595
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	2 cut(s)	135, 485
TatI	WGTACW	2 cut(s)	129, 507
TauI	GCSGC	3 cut(s)	173, 209, 262
TfiI	GAWTC	5 cut(s)	94, 124, 250, 269, 521
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	139
TspGWI	ACGGA	3 cut(s)	36, 176, 334
VpaK11BI	GGWCC	3 cut(s)	7, 23, 403
XhoI	CTCGAG	1 cut(s)	242
ZrmI	AGTACT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.