Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0021277

Physical Location & Seq

Genomic Coordinates Reverse (-)

58874038 .. 58874403

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG272800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCCGCAGCTGGAGGAGAAGAGCATCAAGCGCGTCTTGTACAAGGCGTCGCCGTACGCGGCTTTCCGATCTGAGAAGTGGGTGGTGGTGTCGGAGTACCCGACGGAGCCGCTCCGGAAGCTGGTGAAGATCAGAGGGTGGCAGGTGCTGGCGATTGGGAACTCCAAAACGCCGTCGGATTGGAGCCTCAAAGGTGCGATCTTCTTGTCCCTTGAGCAACAAGCGCAGTTGGGTTTTAGGGTTTTGGAGTATTTGCCTTATGATTCTTATGTTAGGAAGACTGTGGGGTACTTGTTTGCGATCCAACACGGCGCTCGGAAAATCTTCGACGCCGACGACCGTGGGGAGGTTATTGATAACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009832 GO:0009889 GO:0009987 GO:0010383 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016043 GO:0016051 GO:0019222 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0051128 GO:0051273 GO:0051274 GO:0052324 GO:0052541 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098791 GO:1901576 GO:1903338 GO:2000112 GO:2001006 GO:2001009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STELLO

Protein Analysis

121

Amino Acids

13.94

Weight (kDa)

9.12

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021277)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g07420 pycom12g06350 pycom14g06160
rosa_samantha	Rh4AG272800 Rh4BG278500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	133
AccBSI	CCGCTC	1 cut(s)	112
AccII	CGCG	2 cut(s)	33, 59
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	3 cut(s)	5, 59, 110
AclWI	GGATC	1 cut(s)	295
AcyI	GRCGYC	2 cut(s)	47, 330
AfaI	GTAC	4 cut(s)	41, 56, 98, 290
AfiI	CCNNNNNNNGG	2 cut(s)	121, 346
AluBI	AGCT	2 cut(s)	10, 121
AluI	AGCT	2 cut(s)	10, 121
AlwI	GGATC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	148
Aor13HI	TCCGGA	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	7
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	3 cut(s)	33, 226, 314
AsuHPI	GGTGA	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	19
BceAI	ACGGC	3 cut(s)	37, 157, 325
BfoI	RGCGCY	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	133
BisI	GCNGC	4 cut(s)	5, 8, 60, 110
BlsI	GCNGC	4 cut(s)	6, 9, 61, 111
BmiI	GGNNCC	2 cut(s)	108, 185
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	233
BsaHI	GRCGYC	2 cut(s)	47, 330
BsaJI	CCNNGG	1 cut(s)	340
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 346
BseAI	TCCGGA	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	121, 346
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	19
Bsh1236I	CGCG	2 cut(s)	33, 59
Bsh1285I	CGRYCG	1 cut(s)	340
BsiEI	CGRYCG	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	115
BsiWI	CGTACG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	121, 346
BsmFI	GGGAC	1 cut(s)	193
Bsp13I	TCCGGA	1 cut(s)	114
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	4 cut(s)	68, 129, 198, 300
BspACI	CCGC	3 cut(s)	5, 59, 110
BspCNI	CTCAG	1 cut(s)	64
BspEI	TCCGGA	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	33, 59
BspLI	GGNNCC	2 cut(s)	108, 185
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	295
BspQI	GCTCTTC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	112
BsrGI	TGTACA	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	4 cut(s)	68, 129, 198, 300
BssNI	GRCGYC	2 cut(s)	47, 330
Bst4CI	ACNGT	2 cut(s)	283, 341
Bst6I	CTCTTC	1 cut(s)	14
BstACI	GRCGYC	2 cut(s)	47, 330
BstAUI	TGTACA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	340
BstFNI	CGCG	2 cut(s)	33, 59
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	3 cut(s)	33, 226, 314
BstKTI	GATC	4 cut(s)	71, 132, 201, 303
BstMBI	GATC	4 cut(s)	68, 129, 198, 300
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 118, 223
BstUI	CGCG	2 cut(s)	33, 59
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	150
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	3 cut(s)	33, 226, 314
CseI	GACGC	3 cut(s)	22, 36, 338
Csp6I	GTAC	4 cut(s)	40, 55, 97, 289
CviJI	RGCY	5 cut(s)	10, 62, 109, 121, 186
CviKI_1	RGCY	5 cut(s)	10, 62, 109, 121, 186
CviQI	GTAC	4 cut(s)	40, 55, 97, 289
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	4 cut(s)	70, 131, 200, 302
DpnII	GATC	4 cut(s)	68, 129, 198, 300
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
FaiI	YATR	2 cut(s)	261, 270
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	5, 8, 60, 110
Fsp4HI	GCNGC	4 cut(s)	5, 8, 60, 110
GlaI	GCGC	3 cut(s)	32, 225, 313
GluI	GCNGC	4 cut(s)	5, 8, 60, 110
GsuI	CTGGAG	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	315
HapII	CCGG	1 cut(s)	115
HgaI	GACGC	3 cut(s)	22, 36, 338
HhaI	GCGC	3 cut(s)	33, 226, 314
Hin1I	GRCGYC	2 cut(s)	47, 330
Hin6I	GCGC	3 cut(s)	31, 224, 312
HinP1I	GCGC	3 cut(s)	31, 224, 312
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	6 cut(s)	68, 73, 94, 134, 178, 318
Hpy188III	TCNNGA	1 cut(s)	115
Hpy99I	CGWCG	5 cut(s)	52, 106, 178, 332, 338
HpyCH4III	ACNGT	2 cut(s)	283, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 118, 223
HpyF3I	CTNAG	1 cut(s)	72
Hsp92I	GRCGYC	2 cut(s)	47, 330
HspAI	GCGC	3 cut(s)	31, 224, 312
Kpn2I	TCCGGA	1 cut(s)	114
Kzo9I	GATC	4 cut(s)	68, 129, 198, 300
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	3 cut(s)	106, 117, 183
LpnPI	CCDG	4 cut(s)	107, 128, 128, 134
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	1 cut(s)	33
MalI	GATC	4 cut(s)	70, 131, 200, 302
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	4 cut(s)	68, 129, 198, 300
MboII	GAAGA	5 cut(s)	31, 139, 193, 289, 316
MmeI	TCCRAC	3 cut(s)	72, 156, 328
MnlI	CCTC	4 cut(s)	7, 128, 197, 340
MroI	TCCGGA	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	1 cut(s)	115
MvnI	CGCG	2 cut(s)	33, 59
MwoI	GCNNNNNNNGC	3 cut(s)	30, 118, 223
NdeII	GATC	4 cut(s)	68, 129, 198, 300
NlaIV	GGNNCC	2 cut(s)	108, 185
PaqCI	CACCTGC	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 333
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	263
Pfl23II	CGTACG	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	6, 9, 61, 111
PspLI	CGTACG	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	108, 185
PstNI	CAGNNNCTG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	4 cut(s)	41, 56, 98, 290
RsaNI	GTAC	4 cut(s)	40, 55, 97, 289
SapI	GCTCTTC	1 cut(s)	14
SatI	GCNGC	4 cut(s)	5, 8, 60, 110
Sau3AI	GATC	4 cut(s)	68, 129, 198, 300
SetI	ASST	5 cut(s)	12, 123, 147, 196, 351
SfaNI	GCATC	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SsiI	CCGC	3 cut(s)	5, 59, 110
TaaI	ACNGT	2 cut(s)	283, 341
TaqI	TCGA	1 cut(s)	327
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	3 cut(s)	7, 62, 112
TfiI	GAWTC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	7
TspGWI	ACGGA	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.