pycom11g08770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0019827
Physical Location & Seq
Reverse (-)
6852589 .. 6853746
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08770.2

Sequence Viewer

Length: 816 bp
ATGTCTCACAGTTCAGAAGAAACAGATATTGGAATACTGCAGCAAAATGTACTAGACGACCTTCGGAAGATATTCTTGGGGCAGAATAAAGCCTTGATAGAATCTGAAACAGAAAAGAAGAAGCTTAAGAAAGAGCTTGAGCGGAGTGAAGCTCAAAACAAAGAGCTCATGAAGGAACTTGATCAGTGTGAGAACCAACTGCAACAAATGGCGGAAGAACGAAAGATATGGCATAGAGAAAAGGATGAACTTCAAAGGAAAAAAATTGAATTGGAAAAGAAGCTTGATGCGAAGAAGATAGGATCAGATGGCGAAGCACGTGTCCAAGAAACTGCTGCCACAAATTATGGCTTGAAGAATTTAAATAGTACCAATACCGATTCAAATTTCCAAGTCAAGGATGTGGCAAGTCTAGAAGAATCAAGCATGACTGAAAAGGATATCATGCAGAAGAGTCTGAGGGAGCTAAAAAAAATGCTGAAACATCAATTACAGAACAAAGAAGTGGCCAGGCGGGAAGCGTTGAGTACTCACATCTTCTCTGGTGGACAACATGATGCCCTTCACGGAAGGGGTTCTGGAATGTATGTAGCAGAGGATGATTACGGGAGGAAATCTTCAGGAAAGGAACAATCGACAATTACAAATTGCGAATGTGATGAAAATGAGGTAAGCATTGAGAGCACCAGTGACAAGTTATCGGAATTTAAGGGAAGTGAGATGAAGAAAGGCAACAACATCCGTGAGAAGGTTATCATGCAGGAAGGATATTATGAGGTTAAGTCTAAAGAAGCTAAGGAAATCGCTGAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.05

Weight (kDa)

5.62

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019827)

Species Orthologous Gene IDs
pyrus_communis pycom11g08770
rosa_multiflora Rmu_sc0002915.1_g000017
rosa_samantha Rh5BG441200 Rh5BG441300 Rh5CG463800 Rh5CG463900
rosa_wichuraiana Rw5G040020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 142
AciI CCGC 3 cut(s) 142, 212, 514
AclWI GGATC 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 3 cut(s) 358, 385, 704
AcuI CTGAAG 1 cut(s) 603
AcvI CACGTG 1 cut(s) 320
AfaI GTAC 3 cut(s) 51, 370, 529
AfiI CCNNNNNNNGG 2 cut(s) 397, 748
AflII CTTAAG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 4 cut(s) 254, 269, 355, 384
AjnI CCWGG 1 cut(s) 509
AjuI GAANNNNNNNTTGG 4 cut(s) 12, 44, 59, 91
AluBI AGCT 7 cut(s) 124, 136, 152, 166, 283, 466, 794
AluI AGCT 7 cut(s) 124, 136, 152, 166, 283, 466, 794
Alw21I GWGCWC 2 cut(s) 168, 686
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 310
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 40, 335
ApoI RAATTY 3 cut(s) 358, 385, 704
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
Asp700I GAANNNNTTC 2 cut(s) 71, 574
BalI TGGCCA 1 cut(s) 509
BanII GRGCYC 1 cut(s) 168
BbrPI CACGTG 1 cut(s) 320
Bbv12I GWGCWC 2 cut(s) 168, 686
BbvI GCAGC 2 cut(s) 52, 322
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 511
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 53, 413
BfmI CTRYAG 1 cut(s) 38
BfrI CTTAAG 1 cut(s) 125
BisI GCNGC 2 cut(s) 41, 336
BlsI GCNGC 2 cut(s) 42, 337
BmcAI AGTACT 1 cut(s) 529
Bme1390I CCNGG 1 cut(s) 511
BmrFI CCNGG 1 cut(s) 511
BmsI GCATC 2 cut(s) 277, 547
BplI GAGNNNNNCTC 2 cut(s) 136, 168
Bpu10I CCTNAGC 1 cut(s) 795
BpuEI CTTGAG 1 cut(s) 158
BsaAI YACGTR 1 cut(s) 320
Bsc4I CCNNNNNNNGG 2 cut(s) 397, 748
Bse1I ACTGG 1 cut(s) 687
BseBI CCWGG 1 cut(s) 511
BseGI GGATG 4 cut(s) 250, 406, 604, 738
BseLI CCNNNNNNNGG 2 cut(s) 397, 748
BseMII CTCAG 1 cut(s) 449
BseNI ACTGG 1 cut(s) 687
BseXI GCAGC 2 cut(s) 52, 322
BshFI GGCC 1 cut(s) 509
BsiHKAI GWGCWC 2 cut(s) 168, 686
BslI CCNNNNNNNGG 2 cut(s) 397, 748
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 509
Bsp1286I GDGCHC 2 cut(s) 168, 686
Bsp143I GATC 2 cut(s) 181, 302
BspACI CCGC 3 cut(s) 142, 212, 514
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 1 cut(s) 450
BspHI TCATGA 1 cut(s) 168
BspMAI CTGCAG 1 cut(s) 42
BspPI GGATC 1 cut(s) 310
BspTI CTTAAG 1 cut(s) 125
BsrBI CCGCTC 1 cut(s) 142
BsrI ACTGG 1 cut(s) 687
BssMI GATC 2 cut(s) 181, 302
Bst2UI CCWGG 1 cut(s) 511
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 446
BstAFI CTTAAG 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 320
BstDEI CTNAG 2 cut(s) 458, 795
BstF5I GGATG 4 cut(s) 250, 406, 604, 738
BstKTI GATC 2 cut(s) 184, 305
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 181, 302
BstMWI GCNNNNNNNGC 1 cut(s) 681
BstNI CCWGG 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 509
BstSFI CTRYAG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 52, 322
BsuRI GGCC 1 cut(s) 509
BtsCI GGATG 4 cut(s) 250, 406, 604, 738
BtsIMutI CAGTG 2 cut(s) 191, 694
CciI TCATGA 1 cut(s) 168
Csp6I GTAC 3 cut(s) 50, 369, 528
CviAII CATG 5 cut(s) 169, 427, 445, 554, 757
CviQI GTAC 3 cut(s) 50, 369, 528
DdeI CTNAG 2 cut(s) 458, 795
DpnI GATC 2 cut(s) 183, 304
DpnII GATC 2 cut(s) 181, 302
DraI TTTAAA 1 cut(s) 363
EaeI YGGCCR 1 cut(s) 507
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
EciI GGCGGA 1 cut(s) 227
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 603
Eco72I CACGTG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 509
EcoRV GATATC 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 5 cut(s) 172, 430, 448, 557, 760
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 5 cut(s) 168, 426, 444, 553, 756
FauI CCCGC 1 cut(s) 507
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 41, 336
FokI GGATG 4 cut(s) 257, 413, 611, 725
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 41, 336
FspBI CTAG 2 cut(s) 53, 413
GluI GCNGC 2 cut(s) 41, 336
HaeIII GGCC 1 cut(s) 509
Hin1II CATG 5 cut(s) 172, 430, 448, 557, 760
HindIII AAGCTT 2 cut(s) 122, 281
HinfI GANTC 4 cut(s) 101, 380, 419, 454
Hpy166II GTNNAC 1 cut(s) 548
Hpy188I TCNGA 6 cut(s) 16, 66, 106, 307, 459, 703
Hpy188III TCNNGA 4 cut(s) 169, 413, 579, 621
Hpy8I GTNNAC 1 cut(s) 548
HpyAV CCTTC 6 cut(s) 71, 166, 564, 572, 742, 758
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 4 cut(s) 40, 202, 448, 760
HpyF10VI GCNNNNNNNGC 1 cut(s) 681
HpyF3I CTNAG 2 cut(s) 458, 795
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 5 cut(s) 172, 430, 448, 557, 760
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 2 cut(s) 181, 302
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 7 cut(s) 496, 523, 528, 564, 606, 700, 746
Lsp1109I GCAGC 2 cut(s) 52, 322
LweI GCATC 2 cut(s) 277, 547
MaeI CTAG 2 cut(s) 53, 413
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 689
MalI GATC 2 cut(s) 183, 304
MbiI CCGCTC 1 cut(s) 142
MboI GATC 2 cut(s) 181, 302
MhlI GDGCHC 2 cut(s) 168, 686
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 9 cut(s) 264, 269, 343, 358, 385, 488, 639, 646, 704
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 1 cut(s) 463
MnlI CCTC 5 cut(s) 453, 589, 603, 661, 769
Mox20I TGGCCA 1 cut(s) 509
MroXI GAANNNNTTC 2 cut(s) 71, 574
MscI TGGCCA 1 cut(s) 509
MseI TTAA 4 cut(s) 126, 362, 708, 780
Msp20I TGGCCA 1 cut(s) 509
MspCI CTTAAG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 511
MvaI CCWGG 1 cut(s) 511
MwoI GCNNNNNNNGC 1 cut(s) 681
NdeII GATC 2 cut(s) 181, 302
NlaIII CATG 5 cut(s) 172, 430, 448, 557, 760
NmuCI GTSAC 1 cut(s) 689
PagI TCATGA 1 cut(s) 168
PdmI GAANNNNTTC 2 cut(s) 71, 574
PfeI GAWTC 3 cut(s) 101, 380, 419
PkrI GCNGC 2 cut(s) 42, 337
PleI GAGTC 1 cut(s) 462
PmaCI CACGTG 1 cut(s) 320
PmlI CACGTG 1 cut(s) 320
PpsI GAGTC 1 cut(s) 462
Ppu21I YACGTR 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 509
PspCI CACGTG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 509
PstI CTGCAG 1 cut(s) 42
RsaI GTAC 3 cut(s) 51, 370, 529
RsaNI GTAC 3 cut(s) 50, 369, 528
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 4 cut(s) 126, 362, 708, 780
SatI GCNGC 2 cut(s) 41, 336
Sau3AI GATC 2 cut(s) 181, 302
ScaI AGTACT 1 cut(s) 529
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 1 cut(s) 511
SduI GDGCHC 2 cut(s) 168, 686
SfaNI GCATC 2 cut(s) 277, 547
SfcI CTRYAG 1 cut(s) 38
SmiI ATTTAAAT 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 125, 137
SmoI CTYRAG 2 cut(s) 125, 137
Sse9I AATT 9 cut(s) 264, 269, 343, 358, 385, 488, 639, 646, 704
SsiI CCGC 3 cut(s) 142, 212, 514
SspMI CTAG 2 cut(s) 53, 413
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 509
SwaI ATTTAAAT 1 cut(s) 363
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 635
TasI AATT 9 cut(s) 264, 269, 343, 358, 385, 488, 639, 646, 704
TatI WGTACW 2 cut(s) 49, 527
TfiI GAWTC 3 cut(s) 101, 380, 419
Tru1I TTAA 4 cut(s) 126, 362, 708, 780
Tru9I TTAA 4 cut(s) 126, 362, 708, 780
TscAI CASTG 2 cut(s) 191, 694
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 2 cut(s) 40, 335
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 4 cut(s) 185, 261, 675, 737
TspGWI ACGGA 2 cut(s) 582, 731
TspRI CASTG 2 cut(s) 191, 694
Vha464I CTTAAG 1 cut(s) 125
XapI RAATTY 3 cut(s) 358, 385, 704
XbaI TCTAGA 1 cut(s) 412
XmnI GAANNNNTTC 2 cut(s) 71, 574
XspI CTAG 2 cut(s) 53, 413
ZrmI AGTACT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.