Rh5CG463800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
64655520 .. 64655900
381 bp
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UTR
Exon/CDS
Intron
Rh5CG463800.1

Sequence Viewer

Length: 381 bp
ATGATTTTCTGCAGTAAATACAAATGTTGTTTGTATCGTACTCTTACTACACCAAAGTTTGATGTCGTTACTGCGATGAAGAAGAAAACTTGGTACTGCAACACCAAATTGCATGACGTGTATTTGAAACGGACATTATGGCTTGACCTAGTTGCCAACAATAACATTCTTATATTAAAGGTGTTTCTAAAACATGTTTCTTCTTTTGTTGTTGCAAGAGGATGCTTACTGACCAGAAGCAGAAGCAATTTTGGAAACATATATAGTCAAGCACTTTGGCTTTGGAGAGGTATATATATGTTGATGGGTACTGATGAAATCCCTAAACATTGTGATGAGGAGTTGTTTCCTTTCCGTGGCAACATTGAAGTTGGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.75

Weight (kDa)

9.43

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019827)

Species Orthologous Gene IDs
pyrus_communis pycom11g08770
rosa_multiflora Rmu_sc0002915.1_g000017
rosa_samantha Rh5BG441200 Rh5BG441300 Rh5CG463800 Rh5CG463900
rosa_wichuraiana Rw5G040020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 40, 95, 310
AfiI CCNNNNNNNGG 1 cut(s) 356
AflIII ACRYGT 2 cut(s) 117, 193
AgsI TTSAA 2 cut(s) 127, 368
AjiI CACGTC 1 cut(s) 118
BccI CCATC 1 cut(s) 298
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 10
BmgBI CACGTC 1 cut(s) 118
BmsI GCATC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 227
BseLI CCNNNNNNNGG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 356
BspMAI CTGCAG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 355
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 89
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 227
Csp6I GTAC 3 cut(s) 39, 94, 309
CviAII CATG 2 cut(s) 113, 194
CviJI RGCY 3 cut(s) 142, 280, 378
CviKI_1 RGCY 3 cut(s) 142, 280, 378
CviQI GTAC 3 cut(s) 39, 94, 309
FaeI CATG 2 cut(s) 116, 197
FatI CATG 2 cut(s) 112, 193
FokI GGATG 1 cut(s) 234
FspBI CTAG 1 cut(s) 149
Hin1II CATG 2 cut(s) 116, 197
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 4 cut(s) 12, 99, 112, 215
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 2 cut(s) 116, 197
LpnPI CCDG 1 cut(s) 247
LweI GCATC 1 cut(s) 212
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 67
MboII GAAGA 3 cut(s) 91, 94, 192
MluCI AATT 2 cut(s) 107, 247
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 4 cut(s) 212, 281, 331, 368
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 333
NlaIII CATG 2 cut(s) 116, 197
NspI RCATGY 1 cut(s) 197
PciI ACATGT 1 cut(s) 193
PscI ACATGT 1 cut(s) 193
PstI CTGCAG 1 cut(s) 14
RsaI GTAC 3 cut(s) 40, 95, 310
RsaNI GTAC 3 cut(s) 39, 94, 309
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 1 cut(s) 176
SetI ASST 4 cut(s) 120, 150, 183, 292
SfaNI GCATC 1 cut(s) 212
SfcI CTRYAG 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 2 cut(s) 107, 247
SspMI CTAG 1 cut(s) 149
TaiI ACGT 1 cut(s) 120
TasI AATT 2 cut(s) 107, 247
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 92, 330
TspGWI ACGGA 2 cut(s) 145, 344
XceI RCATGY 1 cut(s) 197
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.