Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0014963

Physical Location & Seq

Genomic Coordinates Forward (+)

9923301 .. 9924559

Gene Structure 1259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCAGCTTGGTCGTCTTTGAAACAATTGGCAAAGGAAACCGCAAGCTCTTCGTCTGAGCCAGAGAACAATGATGAGCTGGAACAGATCACTATAGCACGAGCCTTGCTGAATTATCGTATAAAGGAAAAGATGACGATGGCAAATCCAACTGCTCCAATTCTATTTCCAAAGAAGTTTCCAGTTCAGAACCGCAGACCTACAAGTCCACAACCTCCTCCTGCTCACACCTCAAAAATACTGCCCTTAATTTGCCAAAAGCAAGCTTCCCGGAGCAGATACCAATCAAATGCAACACATGATAATCGTGTTACTTCATCACAGGCTTCTCCACTAGACAGTCGTGTGATGCGTCCCCACAGATTCCCTGCTGCAGGAGCAGCTCCTTATGTACCCATTAGACAATTGAGGACTCCTTGCCATGGAATTGCACCACCAGTGACAATAAGGACAGCAGTGCCTGTGTTCTCGGCACCCCCACTTCCGCCACCTCATGCAATGCCCTGCCAAACAATGCGTATTCCACCCGTACGTGTGGCTCCTCCTGTCACAATGAGGCAGGCTGTACCTGTATTTTCTGCTCCACCGGTTAAGAAAGATGATCGACCGACCACTCGGAAAGAAGAATCTCCGGTCATTGTGAAAGAAGATCCTCCAATCATTGCGAAAGAAGATTCCCCAATCATTCTGAAAGAAGATCCTCCAATCATTCCGAAAGATCCTGCTGCTGTTATTGCTCCCGGTGTGCAGAATAAACCCATAGGTCAAGTAGAGGAAACTGTAAGAGCAGCTGCCGATGATTTGGTGGAATCGAAGACGGTTAAAATCTTGGAACAACTAAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dsrm

Protein Analysis

283

Amino Acids

30.9

Weight (kDa)

9.78

Isoelectric Point (pI)

69.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28380
fragaria_vesca	FvH4_3g32200
malus_domestica	MD03G1118400.v1.1 MD11G1136700.v1.1
prunus_persica	Prupe.6G102200_v2.0.a1
pyrus_communis	pycom11g11320
rosa_chinensis	RchiOBHm_Chr5g0058811
rosa_laevigata	RLG00000035253
rosa_multiflora	Rmu_sc0005457.1_g000002
rosa_roxburghii	Rroxscaffold_1G00021580
rosa_rugosa	Rorug05G0319300
rosa_samantha	Rh5AG384100 Rh5BG396000 Rh5CG419900 Rh5DG411800
rosa_wichuraiana	Rw5G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	472
AciI	CCGC	3 cut(s)	42, 193, 485
AclWI	GGATC	3 cut(s)	644, 692, 713
AcsI	RAATTY	1 cut(s)	843
AfaI	GTAC	3 cut(s)	393, 531, 567
AfiI	CCNNNNNNNGG	2 cut(s)	374, 422
AflIII	ACRYGT	1 cut(s)	532
AgeI	ACCGGT	1 cut(s)	586
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	6 cut(s)	8, 48, 79, 266, 383, 791
AluI	AGCT	6 cut(s)	8, 48, 79, 266, 383, 791
AlwI	GGATC	3 cut(s)	644, 692, 713
AlwNI	CAGNNNCTG	1 cut(s)	461
ApeKI	GCWGC	6 cut(s)	5, 371, 380, 725, 788, 791
ApoI	RAATTY	1 cut(s)	843
AsiGI	ACCGGT	1 cut(s)	586
AsuC2I	CCSGG	2 cut(s)	271, 741
BanI	GGYRCC	1 cut(s)	472
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	821
BbvI	GCAGC	6 cut(s)	17, 358, 392, 712, 778, 800
BccI	CCATC	1 cut(s)	133
BcgI	CGANNNNNNTGC	3 cut(s)	28, 33, 67
BcnI	CCSGG	2 cut(s)	271, 741
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	2 cut(s)	93, 372
BisI	GCNGC	6 cut(s)	6, 372, 381, 726, 789, 792
BlsI	GCNGC	6 cut(s)	7, 373, 382, 727, 790, 793
Bme1390I	CCNGG	2 cut(s)	271, 741
BmiI	GGNNCC	2 cut(s)	474, 540
BmrFI	CCNGG	2 cut(s)	271, 741
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	821
BpuMI	CCSGG	2 cut(s)	271, 741
BsaAI	YACGTR	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	421
BsaWI	WCCGGW	2 cut(s)	586, 631
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 422
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	2 cut(s)	182, 437
Bse3DI	GCAATG	2 cut(s)	504, 660
Bse8I	GATNNNNATC	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	421
BseJI	GATNNNNATC	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	374, 422
BseMI	GCAATG	2 cut(s)	504, 660
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	182, 437
BseRI	GAGGAG	2 cut(s)	207, 531
BseXI	GCAGC	6 cut(s)	17, 358, 392, 712, 778, 800
BsgI	GTGCAG	1 cut(s)	767
Bsh1285I	CGRYCG	1 cut(s)	608
BshNI	GGYRCC	1 cut(s)	472
BshTI	ACCGGT	1 cut(s)	586
BsiEI	CGRYCG	1 cut(s)	608
BsiSI	CCGG	4 cut(s)	271, 587, 632, 741
BsiWI	CGTACG	1 cut(s)	529
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	2 cut(s)	374, 422
BsmFI	GGGAC	1 cut(s)	339
Bsp143I	GATC	5 cut(s)	87, 601, 649, 697, 718
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	3 cut(s)	42, 193, 485
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	474, 540
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	3 cut(s)	644, 692, 713
BspQI	GCTCTTC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	472
BsrDI	GCAATG	2 cut(s)	504, 660
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	2 cut(s)	182, 437
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	5 cut(s)	87, 601, 649, 697, 718
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	421
Bst2BI	CACGAG	1 cut(s)	99
Bst4CI	ACNGT	3 cut(s)	341, 781, 820
Bst6I	CTCTTC	1 cut(s)	55
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	46, 264, 561
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	421
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstKTI	GATC	5 cut(s)	90, 604, 652, 700, 721
BstMBI	GATC	5 cut(s)	87, 601, 649, 697, 718
BstMCI	CGRYCG	1 cut(s)	608
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 380, 734
BstSCI	CCNGG	2 cut(s)	269, 739
BstSFI	CTRYAG	2 cut(s)	93, 372
BstV1I	GCAGC	6 cut(s)	17, 358, 392, 712, 778, 800
BstV2I	GAAGAC	1 cut(s)	821
BstX2I	RGATCY	3 cut(s)	649, 697, 718
BstYI	RGATCY	3 cut(s)	649, 697, 718
BtgI	CCRYGG	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	444, 462
Cac8I	GCNNGC	3 cut(s)	46, 264, 561
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	586
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	3 cut(s)	392, 530, 566
CspAI	ACCGGT	1 cut(s)	586
CviAII	CATG	3 cut(s)	299, 422, 494
CviQI	GTAC	3 cut(s)	392, 530, 566
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	5 cut(s)	89, 603, 651, 699, 720
DpnII	GATC	5 cut(s)	87, 601, 649, 697, 718
DrdI	GACNNNNNNGTC	1 cut(s)	204
DseDI	GACNNNNNNGTC	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	421
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	3 cut(s)	302, 425, 497
FaiI	YATR	7 cut(s)	95, 122, 300, 390, 423, 495, 761
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	3 cut(s)	298, 421, 493
Fnu4HI	GCNGC	6 cut(s)	6, 372, 381, 726, 789, 792
Fsp4HI	GCNGC	6 cut(s)	6, 372, 381, 726, 789, 792
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	6 cut(s)	6, 372, 381, 726, 789, 792
HapII	CCGG	4 cut(s)	271, 587, 632, 741
HgaI	GACGC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	302, 425, 497
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	5 cut(s)	363, 412, 626, 674, 809
HpaII	CCGG	4 cut(s)	271, 587, 632, 741
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	5 cut(s)	58, 189, 618, 690, 714
Hpy8I	GTNNAC	1 cut(s)	209
HpyCH4III	ACNGT	3 cut(s)	341, 781, 820
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	5 cut(s)	293, 374, 431, 497, 748
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 380, 734
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	3 cut(s)	302, 425, 497
Kzo9I	GATC	5 cut(s)	87, 601, 649, 697, 718
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	7 cut(s)	160, 273, 377, 388, 544, 586, 742
Lsp1109I	GCAGC	6 cut(s)	17, 358, 392, 712, 778, 800
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	3 cut(s)	310, 439, 547
MalI	GATC	5 cut(s)	89, 603, 651, 699, 720
MboI	GATC	5 cut(s)	87, 601, 649, 697, 718
MboII	GAAGA	6 cut(s)	42, 635, 659, 683, 707, 826
MfeI	CAATTG	2 cut(s)	26, 404
MflI	RGATCY	3 cut(s)	649, 697, 718
MluCI	AATT	7 cut(s)	26, 112, 159, 249, 404, 426, 843
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	173
MseI	TTAA	3 cut(s)	248, 591, 822
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	4 cut(s)	271, 587, 632, 741
MspR9I	CCNGG	2 cut(s)	271, 741
MunI	CAATTG	2 cut(s)	26, 404
MwoI	GCNNNNNNNGC	3 cut(s)	377, 380, 734
NciI	CCSGG	2 cut(s)	271, 741
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	5 cut(s)	87, 601, 649, 697, 718
NlaIII	CATG	3 cut(s)	302, 425, 497
NlaIV	GGNNCC	2 cut(s)	474, 540
NmeAIII	GCCGAG	1 cut(s)	449
NmuCI	GTSAC	2 cut(s)	439, 547
PciSI	GCTCTTC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PfeI	GAWTC	4 cut(s)	363, 626, 674, 809
Pfl23II	CGTACG	1 cut(s)	529
PfoI	TCCNGGA	1 cut(s)	269
PinAI	ACCGGT	1 cut(s)	586
PkrI	GCNGC	6 cut(s)	7, 373, 382, 727, 790, 793
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	533
PspLI	CGTACG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	474, 540
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	3 cut(s)	649, 697, 718
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	3 cut(s)	393, 531, 567
RsaNI	GTAC	3 cut(s)	392, 530, 566
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	3 cut(s)	248, 591, 822
SatI	GCNGC	6 cut(s)	6, 372, 381, 726, 789, 792
Sau3AI	GATC	5 cut(s)	87, 601, 649, 697, 718
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	271, 741
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	2 cut(s)	93, 372
Sse9I	AATT	7 cut(s)	26, 112, 159, 249, 404, 426, 843
SsiI	CCGC	3 cut(s)	42, 193, 485
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	269, 739
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	3 cut(s)	341, 781, 820
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	2 cut(s)	604, 812
TaqII	GACCGA	1 cut(s)	622
TasI	AATT	7 cut(s)	26, 112, 159, 249, 404, 426, 843
TfiI	GAWTC	4 cut(s)	363, 626, 674, 809
Tru1I	TTAA	3 cut(s)	248, 591, 822
Tru9I	TTAA	3 cut(s)	248, 591, 822
TscAI	CASTG	2 cut(s)	444, 462
TseFI	GTSAC	2 cut(s)	439, 547
TseI	GCWGC	6 cut(s)	5, 371, 380, 725, 788, 791
Tsp45I	GTSAC	2 cut(s)	439, 547
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	444, 462
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	1 cut(s)	843
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.