pycom11g11670

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013449
Physical Location & Seq
Reverse (-)
10445901 .. 10448621
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1512 bp
ATGCAGATGAAGGAGCTTTTGGCAGAGCTAGCTATGGTTGAAGGAGAAATTGCTCGACTTGAAGGCCAAATCAGCCAACTTCAACCTGGATTGAAGCATGAACAAGAAGCTACAAAGGAATCAAAACTATCAAACCAATGGCAAAATGGAAACCTAATTAGTAACCCCATTCCTCGTGCATCAAATATAGCAATGTCAAGTCCCATGCACAAAAGTGTTAACAATGAGAGCCAGAGAATGGCGTATTATGAGACCAAGGCGTTGCATTTCATAAGTAAAGCTATCAAAGGTGATTATGATCATTTTAACGACCGTAGGCAGAACGAGAAAATTGGAAACTCGAGAGGATTTTCTCATCAGAAAGAAAATTATTTCTATGAGGATGTTAAATTAGGAAATAAGTTTCCGAGAAAAAACGGAATTTTGAGGGCACTCTCGCCCCTACGAGCCCCAAGACCTCCATCACCCAAGCTAAAAGAACGTAATCCAGGGATTACTTCAGAACTCCCACCAAAATCTCTACTGGTTCCAACACAATTAGAAGAGAACAGCCATAACTGGCAACCAAACAGGCTCTCTGAGGAAATCATGAAGTGCCTAAACTTCATATACATTAGGCTGCTTAGAACAACAAGAACAATGGAATTAGAGAAGTCAGGCCCCATTTCAAGGTCTGTCAACTCTTCTACAACCTCAAGAAGCTTCAGAGATGATACCGGCGTAAACTCAAAGTCAAACCTTTTGTTACAAAAGGAATCAAGGCAACAAGACCCTTATGGCATCTTCAATGTGGAAGAGTGTATTCCTAGAGACATTGGCCCTTACAAGAACTTGGTTATTTTCACCTCAATCTCTATGGACCCAAAATCCATTTCAGCCTCCAACTCTTTTCCTTTACTAAAAAAATTAAGGTACATAACTACATATATAGTTGGTTTTCTCCAGTACGGAGTGCCTGCTTCGGTGGAAAAATTACTCACATTGATGACCAAGGCAACTCTAAACATAGGGGGTAAGATTTTAAATGCTGAATCCATAGAGCACTACATTCTGAGGAAGCCAGCACCTTCCAATATGCAAGAGGCGTTTCAGAATGGTGACACAGTCGATAAATCCGTTGCTCACGAACTCTATGGTCTCGATTCCATGGATCCCAATGTCACATTTGCTCTGTGTTGTGGAACTCGTTCTTCTCCTGCGGTGAGGATATACACAGCCGACGGTGTCGTAGCTGAGTTGGAGAAATCAAAGTTGGAGTACCTGCAAGCATCAATTGTGGTGACCAGCTCAAAGAAAATTGTGATCCCAGAACTACTGCTAGGAAACTTGCTTGATTTTGCTGTGGATGTGGACTCACTAGTTCAGTGGGTTTGCCACCAGTTACCAACATCTGGATCATTGAGAAAATCAATGGTGGATTGCTTCAGGGGCCACATTAGCAGGGGCAAGATTAGTACGACTGTTGAGAAAATGCCATATGATTTTGAGTTTCAGTACATACTGGCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

504

Amino Acids

56.71

Weight (kDa)

9.01

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 2 - 34 6.7e-06 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 309 - 421 2.7e-24 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60720
fragaria_vesca FvH4_3g31550 FvH4_3g31550
malus_domestica MD03G1123800.v1.1 MD11G1140800.v1.1
prunus_persica Prupe.6G106400_v2.0.a1
pyrus_communis pycom11g11670
rosa_chinensis RchiOBHm_Chr5g0058191
rosa_laevigata RLG00000035202
rosa_multiflora Rmu_sc0000367.1_g000041
rosa_roxburghii Rroxscaffold_1G00022340
rosa_rugosa Rorug05G0312700 Rorug05G0312700
rosa_samantha Rh5AG380500 Rh5BG391800 Rh5CG415700 Rh5DG406300
rosa_wichuraiana Rw5G035830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1269
AccB7I CCANNNNNTGG 2 cut(s) 238, 1391
AciI CCGC 1 cut(s) 1199
AclWI GGATC 4 cut(s) 1145, 1158, 1297, 1402
AcoI YGGCCR 1 cut(s) 1503
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 3 cut(s) 483, 688, 1408
AfaI GTAC 5 cut(s) 914, 947, 1259, 1456, 1496
AfiI CCNNNNNNNGG 3 cut(s) 238, 669, 1391
AgsI TTSAA 6 cut(s) 41, 62, 83, 94, 669, 787
AhlI ACTAGT 1 cut(s) 1357
AjnI CCWGG 2 cut(s) 85, 487
AjuI GAANNNNNNNTTGG 5 cut(s) 34, 856, 888, 1235, 1267
AleI CACNNNNGTG 1 cut(s) 213
AluBI AGCT 9 cut(s) 16, 28, 32, 110, 281, 472, 702, 1232, 1287
AluI AGCT 9 cut(s) 16, 28, 32, 110, 281, 472, 702, 1232, 1287
Alw21I GWGCWC 1 cut(s) 1044
Alw26I GTCTC 3 cut(s) 245, 804, 1142
AlwI GGATC 4 cut(s) 1145, 1158, 1297, 1402
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 5 cut(s) 64, 658, 817, 1429, 1503
ApeKI GCWGC 1 cut(s) 619
ApoI RAATTY 1 cut(s) 420
Asp700I GAANNNNTTC 1 cut(s) 1186
AspS9I GGNCC 4 cut(s) 659, 818, 859, 1429
AsuHPI GGTGA 6 cut(s) 302, 456, 835, 1109, 1213, 1291
AsuNHI GCTAGC 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 1 cut(s) 859
BaeGI GKGCMC 1 cut(s) 433
BaeI ACNNNNGTAYC 2 cut(s) 705, 738
BalI TGGCCA 1 cut(s) 1505
BamHI GGATCC 1 cut(s) 1150
BanII GRGCYC 1 cut(s) 451
BauI CACGAG 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 1044
BbvI GCAGC 1 cut(s) 606
BccI CCATC 1 cut(s) 469
BciT130I CCWGG 2 cut(s) 87, 489
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 3 cut(s) 245, 804, 1142
BcuI ACTAGT 1 cut(s) 1357
BfaI CTAG 4 cut(s) 29, 807, 1319, 1358
BfuAI ACCTGC 1 cut(s) 1269
BisI GCNGC 1 cut(s) 620
BlsI GCNGC 1 cut(s) 621
Bme1390I CCNGG 2 cut(s) 87, 489
Bme18I GGWCC 1 cut(s) 859
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 4 cut(s) 659, 818, 859, 1429
BmiI GGNNCC 5 cut(s) 528, 661, 861, 1152, 1430
BmrFI CCNGG 2 cut(s) 87, 489
BmsI GCATC 3 cut(s) 188, 789, 1277
BmtI GCTAGC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 926
BpuEI CTTGAG 1 cut(s) 679
BsaBI GATNNNNATC 1 cut(s) 297
BsaI GGTCTC 2 cut(s) 245, 1142
BsaJI CCNNGG 4 cut(s) 255, 488, 990, 1146
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 669, 1391
Bse118I RCCGGY 1 cut(s) 716
Bse1I ACTGG 5 cut(s) 528, 563, 943, 1378, 1506
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 2 cut(s) 87, 489
BseDI CCNNGG 4 cut(s) 255, 488, 990, 1146
BseGI GGATG 2 cut(s) 388, 1351
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 3 cut(s) 238, 669, 1391
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 3 cut(s) 570, 1043, 1224
BseNI ACTGG 5 cut(s) 528, 563, 943, 1378, 1506
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 1 cut(s) 606
Bsh1285I CGRYCG 1 cut(s) 313
BshFI GGCC 5 cut(s) 66, 660, 819, 1431, 1505
BsiEI CGRYCG 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 1044
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 717
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 3 cut(s) 238, 669, 1391
BsmAI GTCTC 3 cut(s) 245, 804, 1142
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 5 cut(s) 66, 660, 819, 1431, 1505
Bso31I GGTCTC 2 cut(s) 245, 1142
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 3 cut(s) 433, 451, 1044
Bsp143I GATC 4 cut(s) 298, 1150, 1302, 1394
Bsp19I CCATGG 1 cut(s) 1146
BspACI CCGC 1 cut(s) 1199
BspANI GGCC 5 cut(s) 66, 660, 819, 1431, 1505
BspCNI CTCAG 3 cut(s) 571, 1044, 1225
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 5 cut(s) 528, 661, 861, 1152, 1430
BspMI ACCTGC 1 cut(s) 1269
BspOI GCTAGC 1 cut(s) 32
BspPI GGATC 4 cut(s) 1145, 1158, 1297, 1402
BspTNI GGTCTC 2 cut(s) 245, 1142
BsrDI GCAATG 1 cut(s) 198
BsrFI RCCGGY 1 cut(s) 716
BsrI ACTGG 5 cut(s) 528, 563, 943, 1378, 1506
BssAI RCCGGY 1 cut(s) 716
BssECI CCNNGG 4 cut(s) 255, 488, 990, 1146
BssMI GATC 4 cut(s) 298, 1150, 1302, 1394
BssSI CACGAG 1 cut(s) 174
BssT1I CCWWGG 3 cut(s) 255, 990, 1146
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 87, 489
Bst4CI ACNGT 4 cut(s) 314, 1105, 1223, 1462
Bst6I CTCTTC 3 cut(s) 537, 688, 789
BstC8I GCNNGC 4 cut(s) 30, 957, 1062, 1266
BstDEI CTNAG 4 cut(s) 579, 623, 1052, 1233
BstDSI CCRYGG 1 cut(s) 1146
BstEII GGTNACC 1 cut(s) 1279
BstF5I GGATG 2 cut(s) 388, 1351
BstKTI GATC 4 cut(s) 301, 1153, 1305, 1397
BstMAI GTCTC 3 cut(s) 245, 804, 1142
BstMBI GATC 4 cut(s) 298, 1150, 1302, 1394
BstMCI CGRYCG 1 cut(s) 313
BstMWI GCNNNNNNNGC 4 cut(s) 29, 72, 1428, 1437
BstNI CCWGG 2 cut(s) 87, 489
BstPI GGTNACC 1 cut(s) 1279
BstSCI CCNGG 2 cut(s) 85, 487
BstSLI GKGCMC 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 606
BstX2I RGATCY 1 cut(s) 1150
BstYI RGATCY 1 cut(s) 1150
BsuRI GGCC 5 cut(s) 66, 660, 819, 1431, 1505
BtgI CCRYGG 1 cut(s) 1146
BtsCI GGATG 2 cut(s) 388, 1351
BtsIMutI CAGTG 1 cut(s) 1370
BveI ACCTGC 1 cut(s) 1269
Cac8I GCNNGC 4 cut(s) 30, 957, 1062, 1266
CciI TCATGA 1 cut(s) 588
Cfr10I RCCGGY 1 cut(s) 716
Cfr13I GGNCC 4 cut(s) 659, 818, 859, 1429
Csp6I GTAC 5 cut(s) 913, 946, 1258, 1455, 1495
CviAII CATG 4 cut(s) 98, 205, 589, 1147
CviQI GTAC 5 cut(s) 913, 946, 1258, 1455, 1495
DdeI CTNAG 4 cut(s) 579, 623, 1052, 1233
DpnI GATC 4 cut(s) 300, 1152, 1304, 1396
DpnII GATC 4 cut(s) 298, 1150, 1302, 1394
DraI TTTAAA 1 cut(s) 1023
EaeI YGGCCR 1 cut(s) 1503
Eam1104I CTCTTC 3 cut(s) 537, 688, 789
EarI CTCTTC 3 cut(s) 537, 688, 789
Eco130I CCWWGG 3 cut(s) 255, 990, 1146
Eco24I GRGCYC 1 cut(s) 451
Eco31I GGTCTC 2 cut(s) 245, 1142
Eco47I GGWCC 1 cut(s) 859
Eco57I CTGAAG 3 cut(s) 483, 688, 1408
Eco88I CYCGRG 1 cut(s) 340
Eco91I GGTNACC 1 cut(s) 1279
EcoO109I RGGNCCY 1 cut(s) 659
EcoO65I GGTNACC 1 cut(s) 1279
EcoRII CCWGG 2 cut(s) 85, 487
EcoT14I CCWWGG 3 cut(s) 255, 990, 1146
EcoT38I GRGCYC 1 cut(s) 451
ErhI CCWWGG 3 cut(s) 255, 990, 1146
FaeI CATG 4 cut(s) 101, 208, 592, 1150
FaqI GGGAC 1 cut(s) 186
FatI CATG 4 cut(s) 97, 204, 588, 1146
FauNDI CATATG 1 cut(s) 1477
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 620
FokI GGATG 2 cut(s) 395, 1358
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 1 cut(s) 620
FspBI CTAG 4 cut(s) 29, 807, 1319, 1358
GluI GCNGC 1 cut(s) 620
GsuI CTGGAG 1 cut(s) 926
HaeIII GGCC 5 cut(s) 66, 660, 819, 1431, 1505
HapII CCGG 1 cut(s) 717
Hin1II CATG 4 cut(s) 101, 208, 592, 1150
HincII GTYRAC 2 cut(s) 220, 679
HindII GTYRAC 2 cut(s) 220, 679
HindIII AAGCTT 1 cut(s) 700
HinfI GANTC 5 cut(s) 119, 755, 1031, 1142, 1352
HpaI GTTAAC 1 cut(s) 220
HpaII CCGG 1 cut(s) 717
HphI GGTGA 6 cut(s) 302, 456, 835, 1109, 1213, 1291
Hpy166II GTNNAC 4 cut(s) 220, 679, 724, 1351
Hpy188I TCNGA 7 cut(s) 360, 408, 502, 580, 707, 1053, 1092
Hpy188III TCNNGA 6 cut(s) 342, 589, 696, 1124, 1139, 1392
Hpy8I GTNNAC 4 cut(s) 220, 679, 724, 1351
Hpy99I CGWCG 1 cut(s) 1223
HpyAV CCTTC 4 cut(s) 4, 35, 56, 1077
HpyCH4III ACNGT 4 cut(s) 314, 1105, 1223, 1462
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 6 cut(s) 4, 179, 208, 265, 1078, 1264
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 72, 1428, 1437
HpyF3I CTNAG 4 cut(s) 579, 623, 1052, 1233
HpySE526I ACGT 1 cut(s) 481
Hsp92II CATG 4 cut(s) 101, 208, 592, 1150
Ksp22I TGATCA 1 cut(s) 298
KspAI GTTAAC 1 cut(s) 220
Kzo9I GATC 4 cut(s) 298, 1150, 1302, 1394
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 1 cut(s) 606
LweI GCATC 3 cut(s) 188, 789, 1277
MaeI CTAG 4 cut(s) 29, 807, 1319, 1358
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 6 cut(s) 161, 744, 1097, 1159, 1279, 1380
MalI GATC 4 cut(s) 300, 1152, 1304, 1396
MboI GATC 4 cut(s) 298, 1150, 1302, 1394
MboII GAAGA 5 cut(s) 554, 675, 775, 806, 1182
MfeI CAATTG 1 cut(s) 1272
MflI RGATCY 1 cut(s) 1150
MhlI GDGCHC 3 cut(s) 433, 451, 1044
MlsI TGGCCA 1 cut(s) 1505
MluNI TGGCCA 1 cut(s) 1505
MlyI GAGTC 1 cut(s) 1346
MmeI TCCRAC 4 cut(s) 554, 906, 1218, 1233
Mox20I TGGCCA 1 cut(s) 1505
MroXI GAANNNNTTC 1 cut(s) 1186
MscI TGGCCA 1 cut(s) 1505
MseI TTAA 5 cut(s) 219, 306, 387, 908, 1022
MslI CAYNNNNRTG 2 cut(s) 213, 983
Msp20I TGGCCA 1 cut(s) 1505
MspI CCGG 1 cut(s) 717
MspR9I CCNGG 2 cut(s) 87, 489
MunI CAATTG 1 cut(s) 1272
MvaI CCWGG 2 cut(s) 87, 489
MwoI GCNNNNNNNGC 4 cut(s) 29, 72, 1428, 1437
NcoI CCATGG 1 cut(s) 1146
NdeI CATATG 1 cut(s) 1477
NdeII GATC 4 cut(s) 298, 1150, 1302, 1394
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 4 cut(s) 101, 208, 592, 1150
NlaIV GGNNCC 5 cut(s) 528, 661, 861, 1152, 1430
NmuCI GTSAC 3 cut(s) 1097, 1159, 1279
OliI CACNNNNGTG 1 cut(s) 213
PaeR7I CTCGAG 1 cut(s) 340
PagI TCATGA 1 cut(s) 588
PcsI WCGNNNNNNNCGW 1 cut(s) 1113
PdmI GAANNNNTTC 1 cut(s) 1186
PfeI GAWTC 4 cut(s) 119, 755, 1031, 1142
PflFI GACNNNGTC 2 cut(s) 1103, 1223
PflMI CCANNNNNTGG 2 cut(s) 238, 1391
PkrI GCNGC 1 cut(s) 621
PleI GAGTC 1 cut(s) 1346
PpsI GAGTC 1 cut(s) 1346
Psp6I CCWGG 2 cut(s) 85, 487
PspEI GGTNACC 1 cut(s) 1279
PspGI CCWGG 2 cut(s) 85, 487
PspN4I GGNNCC 5 cut(s) 528, 661, 861, 1152, 1430
PspPI GGNCC 4 cut(s) 659, 818, 859, 1429
PsuI RGATCY 1 cut(s) 1150
PsyI GACNNNGTC 2 cut(s) 1103, 1223
RsaI GTAC 5 cut(s) 914, 947, 1259, 1456, 1496
RsaNI GTAC 5 cut(s) 913, 946, 1258, 1455, 1495
RseI CAYNNNNRTG 2 cut(s) 213, 983
SaqAI TTAA 5 cut(s) 219, 306, 387, 908, 1022
SatI GCNGC 1 cut(s) 620
Sau3AI GATC 4 cut(s) 298, 1150, 1302, 1394
Sau96I GGNCC 4 cut(s) 659, 818, 859, 1429
SchI GAGTC 1 cut(s) 1346
ScrFI CCNGG 2 cut(s) 87, 489
SduI GDGCHC 3 cut(s) 433, 451, 1044
SfaNI GCATC 3 cut(s) 188, 789, 1277
Sfr274I CTCGAG 1 cut(s) 340
SinI GGWCC 1 cut(s) 859
SlaI CTCGAG 1 cut(s) 340
SmiMI CAYNNNNRTG 2 cut(s) 213, 983
SmlI CTYRAG 2 cut(s) 340, 694
SmoI CTYRAG 2 cut(s) 340, 694
SpeI ACTAGT 1 cut(s) 1357
SsiI CCGC 1 cut(s) 1199
SspMI CTAG 4 cut(s) 29, 807, 1319, 1358
StyD4I CCNGG 2 cut(s) 85, 487
StyI CCWWGG 3 cut(s) 255, 990, 1146
TaaI ACNGT 4 cut(s) 314, 1105, 1223, 1462
TaiI ACGT 1 cut(s) 484
TaqI TCGA 4 cut(s) 55, 341, 1107, 1140
TatI WGTACW 1 cut(s) 1494
TfiI GAWTC 4 cut(s) 119, 755, 1031, 1142
Tru1I TTAA 5 cut(s) 219, 306, 387, 908, 1022
Tru9I TTAA 5 cut(s) 219, 306, 387, 908, 1022
TscAI CASTG 1 cut(s) 1370
TseFI GTSAC 3 cut(s) 1097, 1159, 1279
TseI GCWGC 1 cut(s) 619
Tsp45I GTSAC 3 cut(s) 1097, 1159, 1279
TspDTI ATGAA 5 cut(s) 23, 114, 259, 595, 605
TspGWI ACGGA 3 cut(s) 432, 963, 1105
TspRI CASTG 1 cut(s) 1370
Tth111I GACNNNGTC 2 cut(s) 1103, 1223
Van91I CCANNNNNTGG 2 cut(s) 238, 1391
VpaK11BI GGWCC 1 cut(s) 859
XapI RAATTY 1 cut(s) 420
XcmI CCANNNNNNNNNTGG 2 cut(s) 83, 143
XhoI CTCGAG 1 cut(s) 340
XmnI GAANNNNTTC 1 cut(s) 1186
XspI CTAG 4 cut(s) 29, 807, 1319, 1358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.