Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004825

Physical Location & Seq

Genomic Coordinates Forward (+)

36971033 .. 36975214

Gene Structure 4182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0312700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATTGCCCCAGTAGTACTAGCTTTGACAGTGGGTTTTCTTGGGTGGGCATATCAGGCACTAAAGCCTCCCCCTCCTAAAATATGCGGTTCACCTGGTGGTCCTCCTGTCACTTCACCTAGAGTGAAACTCAGTGATGGTAGATATTTGGCCTACAGGGAGTTTGGAGTGCCTAAAGAAGAGGCAAAACACAAGATCATCATCATTCATGGCTTTAGCAGTTCCAAAGATCTGGCTTTACCTGTTTCTCAAGAACTCGTTGACGAGTTAAGGGTATATTTTCTCTTCTTTGACAGAGCTGGTTATGGCGAAAGTGATCCGTATCCCTCACGCTCAGTTAAGAGTGAAGCATATGATATTCAAGAACTAGCTGACACGTTGCAGATTGGGTCCAAATTCTATGTAATTGGAATCTCAATGGGGGCTTACCCTGTTTGGAGTTGCTTGAAATACATACCGCACAGATTGTTAGGAGCTTCCCTGGTAGTTCCTTTTGTGAACTACTGGTGGCCTCGTATTCCTGCTAATCTATTGAGAGAGTCCTTTCAGAGGCTGCAGGTATCGGACCAACGGACATTCCAAGTTGCACATTACACCCCATGGTTACTTCATTGGTGGATGACCCAGAAATGGTTCACTGCATTAAGTATGATGGCTGGAAATATGGAGATCTTCTGCCCCAAAGATTTAGAAACATTGAAGAAACTTTCAGAATCCCCAAGTGTTGGTCAGGAAAAGATACAGCAGCAAGGAGAACACGAATCTCTCTACCGAGACCTACTGGCTGGCTATGGAAAATGGGAATTCGACCCCATAGACTTAACGAATCCATTTCCTAACAATGAGGGTTCAGTTCACATTTGGCAAGGCTATGCAGACAGGATCATTCCATATAAAGTAAACCGTTACATTGCAGAGAAGCTTCCCTGGATTCATTATCACGAAGTTCCTGATTATGGGCATTTGCTTATTTTTGAGAGTGATCACTGTGAGGCTGTTTTGAAGGCACTCTTGCGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

340

Amino Acids

38.95

Weight (kDa)

6.6

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	61 - 328	5e-08	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	66 - 327	1.7e-10	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	66 - 335	7.6e-11	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57120
fragaria_vesca	FvH4_3g31560 FvH4_7g19030
malus_domestica	MD01G1105700.v1.1 MD03G1123700.v1.1 MD07G1172200.v1.1 MD12G1106300.v1.1
prunus_persica	Prupe.2G211100_v2.0.a1 Prupe.6G106100_v2.0.a1
pyrus_communis	pycom01g13250 pycom07g16650 pycom17g07150
rosa_chinensis	RchiOBHm_Chr1g0362941 RchiOBHm_Chr5g0058201
rosa_laevigata	RLG00000027610 RLG00000035203
rosa_multiflora	Rmu_sc0000367.1_g000042 Rmu_sc0019019.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022330 Rroxscaffold_4G00293630
rosa_rugosa	Rorug01G0302200 Rorug05G0312700
rosa_samantha	Rh1AG311800 Rh1BG274900 Rh1CG292100 Rh1DG305600 Rh5BG391900 Rh5CG415800 Rh5DG406400
rosa_wichuraiana	Rw1G027630 Rw5G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AccB7I	CCANNNNNTGG	1 cut(s)	725
AciI	CCGC	2 cut(s)	87, 458
AclWI	GGATC	2 cut(s)	311, 890
AcsI	RAATTY	2 cut(s)	395, 803
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	4 cut(s)	549, 630, 725, 956
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	4 cut(s)	362, 448, 700, 1003
AjnI	CCWGG	3 cut(s)	94, 480, 926
AluBI	AGCT	5 cut(s)	23, 299, 371, 476, 922
AluI	AGCT	5 cut(s)	23, 299, 371, 476, 922
Alw26I	GTCTC	1 cut(s)	768
AlwI	GGATC	2 cut(s)	311, 890
AlwNI	CAGNNNCTG	1 cut(s)	553
AoxI	GGCC	2 cut(s)	150, 509
ApeKI	GCWGC	2 cut(s)	553, 745
ApoI	RAATTY	2 cut(s)	395, 803
Asp700I	GAANNNNTTC	1 cut(s)	632
AspS9I	GGNCC	3 cut(s)	101, 390, 565
AsuHPI	GGTGA	2 cut(s)	84, 108
AvaII	GGWCC	3 cut(s)	101, 390, 565
BbvI	GCAGC	2 cut(s)	540, 757
BccI	CCATC	2 cut(s)	131, 646
BciT130I	CCWGG	3 cut(s)	96, 482, 928
BciVI	GTATCC	1 cut(s)	333
BclI	TGATCA	1 cut(s)	982
BcoDI	GTCTC	1 cut(s)	768
BfaI	CTAG	3 cut(s)	20, 120, 368
BfmI	CTRYAG	2 cut(s)	154, 554
BfuAI	ACCTGC	1 cut(s)	547
BfuI	GTATCC	1 cut(s)	333
BglII	AGATCT	2 cut(s)	229, 669
BisI	GCNGC	2 cut(s)	554, 746
BlsI	GCNGC	2 cut(s)	555, 747
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	3 cut(s)	96, 482, 928
Bme18I	GGWCC	3 cut(s)	101, 390, 565
BmgT120I	GGNCC	3 cut(s)	101, 390, 565
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	3 cut(s)	96, 482, 928
BmrI	ACTGGG	1 cut(s)	5
BmuI	ACTGGG	1 cut(s)	5
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BpuEI	CTTGAG	1 cut(s)	234
BsaBI	GATNNNNATC	2 cut(s)	200, 321
BsaI	GGTCTC	1 cut(s)	768
BsaJI	CCNNGG	3 cut(s)	480, 599, 926
Bsc4I	CCNNNNNNNGG	4 cut(s)	549, 630, 725, 956
Bse1I	ACTGG	3 cut(s)	11, 509, 786
Bse3DI	GCAATG	1 cut(s)	909
Bse8I	GATNNNNATC	2 cut(s)	200, 321
BseBI	CCWGG	3 cut(s)	96, 482, 928
BseDI	CCNNGG	3 cut(s)	480, 599, 926
BseGI	GGATG	1 cut(s)	624
BseJI	GATNNNNATC	2 cut(s)	200, 321
BseLI	CCNNNNNNNGG	4 cut(s)	549, 630, 725, 956
BseMI	GCAATG	1 cut(s)	909
BseMII	CTCAG	2 cut(s)	145, 348
BseNI	ACTGG	3 cut(s)	11, 509, 786
BseXI	GCAGC	2 cut(s)	540, 757
BshFI	GGCC	2 cut(s)	152, 511
BslI	CCNNNNNNNGG	4 cut(s)	549, 630, 725, 956
BsmAI	GTCTC	1 cut(s)	768
BsnI	GGCC	2 cut(s)	152, 511
Bso31I	GGTCTC	1 cut(s)	768
Bsp143I	GATC	6 cut(s)	195, 229, 316, 669, 882, 982
Bsp19I	CCATGG	1 cut(s)	599
BspACI	CCGC	2 cut(s)	87, 458
BspANI	GGCC	2 cut(s)	152, 511
BspCNI	CTCAG	2 cut(s)	144, 347
BspLI	GGNNCC	1 cut(s)	391
BspMAI	CTGCAG	1 cut(s)	558
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	2 cut(s)	311, 890
BspTNI	GGTCTC	1 cut(s)	768
BsrDI	GCAATG	1 cut(s)	909
BsrI	ACTGG	3 cut(s)	11, 509, 786
BssECI	CCNNGG	3 cut(s)	480, 599, 926
BssMI	GATC	6 cut(s)	195, 229, 316, 669, 882, 982
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	3 cut(s)	96, 482, 928
Bst4CI	ACNGT	3 cut(s)	31, 905, 989
Bst6I	CTCTTC	2 cut(s)	174, 290
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	2 cut(s)	131, 334
BstDSI	CCRYGG	1 cut(s)	599
BstENI	CCTNNNNNAGG	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	624
BstKTI	GATC	6 cut(s)	198, 232, 319, 672, 885, 985
BstMAI	GTCTC	1 cut(s)	768
BstMBI	GATC	6 cut(s)	195, 229, 316, 669, 882, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	3 cut(s)	96, 482, 928
BstSCI	CCNGG	3 cut(s)	94, 480, 926
BstSFI	CTRYAG	2 cut(s)	154, 554
BstV1I	GCAGC	2 cut(s)	540, 757
BstX2I	RGATCY	2 cut(s)	229, 669
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	2 cut(s)	229, 669
BsuI	GTATCC	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	152, 511
BtgI	CCRYGG	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	624
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	4 cut(s)	36, 139, 636, 985
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	787
CaiI	CAGNNNCTG	1 cut(s)	553
Cfr13I	GGNCC	3 cut(s)	101, 390, 565
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	2 cut(s)	209, 600
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	131, 334
DpnI	GATC	6 cut(s)	197, 231, 318, 671, 884, 984
DpnII	GATC	6 cut(s)	195, 229, 316, 669, 882, 982
DraIII	CACNNNGTG	1 cut(s)	98
Eam1104I	CTCTTC	2 cut(s)	174, 290
EarI	CTCTTC	2 cut(s)	174, 290
Eco130I	CCWWGG	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	768
Eco47I	GGWCC	3 cut(s)	101, 390, 565
EcoNI	CCTNNNNNAGG	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	803
EcoRII	CCWGG	3 cut(s)	94, 480, 926
EcoT14I	CCWWGG	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	2 cut(s)	212, 603
FalI	AAGNNNNNCTT	1 cut(s)	995
FatI	CATG	2 cut(s)	208, 599
FauNDI	CATATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	982
Fnu4HI	GCNGC	2 cut(s)	554, 746
FokI	GGATG	1 cut(s)	631
Fsp4HI	GCNGC	2 cut(s)	554, 746
FspBI	CTAG	3 cut(s)	20, 120, 368
GluI	GCNGC	2 cut(s)	554, 746
HaeIII	GGCC	2 cut(s)	152, 511
Hin1II	CATG	2 cut(s)	212, 603
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	6 cut(s)	411, 539, 713, 761, 826, 931
HphI	GGTGA	2 cut(s)	84, 108
Hpy166II	GTNNAC	6 cut(s)	92, 262, 499, 636, 856, 901
Hpy188I	TCNGA	3 cut(s)	549, 565, 712
Hpy188III	TCNNGA	5 cut(s)	251, 362, 731, 941, 950
Hpy8I	GTNNAC	6 cut(s)	92, 262, 499, 636, 856, 901
HpyAV	CCTTC	1 cut(s)	997
HpyCH4III	ACNGT	3 cut(s)	31, 905, 989
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	6 cut(s)	382, 556, 587, 641, 875, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	131, 334
HpySE526I	ACGT	1 cut(s)	377
Hsp92II	CATG	2 cut(s)	212, 603
Ksp22I	TGATCA	1 cut(s)	982
Kzo9I	GATC	6 cut(s)	195, 229, 316, 669, 882, 982
LmnI	GCTCC	1 cut(s)	473
Lsp1109I	GCAGC	2 cut(s)	540, 757
MabI	ACCWGGT	1 cut(s)	94
MaeI	CTAG	3 cut(s)	20, 120, 368
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	3 cut(s)	109, 603, 905
MalI	GATC	6 cut(s)	197, 231, 318, 671, 884, 984
MboI	GATC	6 cut(s)	195, 229, 316, 669, 882, 982
MboII	GAAGA	4 cut(s)	191, 277, 664, 712
MflI	RGATCY	2 cut(s)	229, 669
MluCI	AATT	3 cut(s)	395, 405, 803
MlyI	GAGTC	1 cut(s)	548
MnlI	CCTC	9 cut(s)	78, 84, 114, 175, 337, 522, 543, 838, 985
MroXI	GAANNNNTTC	1 cut(s)	632
MseI	TTAA	4 cut(s)	269, 339, 644, 821
MspR9I	CCNGG	3 cut(s)	96, 482, 928
MvaI	CCWGG	3 cut(s)	96, 482, 928
MwoI	GCNNNNNNNGC	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	599
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	6 cut(s)	195, 229, 316, 669, 882, 982
NlaIII	CATG	2 cut(s)	212, 603
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	632
PfeI	GAWTC	5 cut(s)	411, 713, 761, 826, 931
PflMI	CCANNNNNTGG	1 cut(s)	725
PkrI	GCNGC	2 cut(s)	555, 747
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Psp6I	CCWGG	3 cut(s)	94, 480, 926
PspGI	CCWGG	3 cut(s)	94, 480, 926
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	3 cut(s)	101, 390, 565
PstI	CTGCAG	1 cut(s)	558
PstNI	CAGNNNCTG	1 cut(s)	553
PsuI	RGATCY	2 cut(s)	229, 669
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	4 cut(s)	269, 339, 644, 821
SatI	GCNGC	2 cut(s)	554, 746
Sau3AI	GATC	6 cut(s)	195, 229, 316, 669, 882, 982
Sau96I	GGNCC	3 cut(s)	101, 390, 565
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	3 cut(s)	96, 482, 928
SexAI	ACCWGGT	1 cut(s)	94
SfcI	CTRYAG	2 cut(s)	154, 554
SinI	GGWCC	3 cut(s)	101, 390, 565
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	3 cut(s)	395, 405, 803
SsiI	CCGC	2 cut(s)	87, 458
SspMI	CTAG	3 cut(s)	20, 120, 368
StyD4I	CCNGG	3 cut(s)	94, 480, 926
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	3 cut(s)	31, 905, 989
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	1 cut(s)	807
TasI	AATT	3 cut(s)	395, 405, 803
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	5 cut(s)	411, 713, 761, 826, 931
Tru1I	TTAA	4 cut(s)	269, 339, 644, 821
Tru9I	TTAA	4 cut(s)	269, 339, 644, 821
TscAI	CASTG	4 cut(s)	36, 139, 643, 992
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	553, 745
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	197, 599, 923
TspGWI	ACGGA	2 cut(s)	309, 586
TspRI	CASTG	4 cut(s)	36, 139, 643, 992
Van91I	CCANNNNNTGG	1 cut(s)	725
VpaK11BI	GGWCC	3 cut(s)	101, 390, 565
XagI	CCTNNNNNAGG	1 cut(s)	547
XapI	RAATTY	2 cut(s)	395, 803
XmnI	GAANNNNTTC	1 cut(s)	632
XspI	CTAG	3 cut(s)	20, 120, 368
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.