pycom07g16650

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
19073219 .. 19074454
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16650.1

Sequence Viewer

Length: 1236 bp
ATGATCGACGCCTCCTCCGCCGCCCCCTGCACCGCCGTCCCTATGTTCTGGACCAAAAAGAGGACGCAGGTGATTGAGCCCAAGAGCCTCATCAAACACCGAGAATCCTCCTCATCATTCCCCGACCTCTACTCCGCCATTTGCAGCACCACCATCGACAACTCCAGCTACAACTTCTCCAAATCCTCCACCTCCTCCTCCTCCGTCGCCTCCCTCAAATCCTTTAAATCCTCCCTCCCTCAAAACCCCCAAATCTACGACCTCTCCGAGATCCGCTCCGCCACCTCCAACTTCCTCCCACACCGCCGCCTCTCCTCCTCCTCCACCTCCTCCTCCTGGCGCTGCTCCATCCGCTCCGAAGACGCTGTCGTCTTCCAGCGCAAGTCCCGCCTCCCCCTCTCCCTCCCCGACCTCCACCGCCGCCTCTCCCTCATCTCCAAATCCCACCACTCCAGCCTCATCAAGCTCCTCGGCGCCTCCCTCTCCGGCAGCTACGTCTACCTAGTCTACGAATTCGTCGCCGGCGCCAACCTCGCCGACTGCCTCCGCAACCCGAAGAACCCGAGCTACACCGTCCTGTCGTCGTGGCTCTCCAGGATGCAGATCGCCACCGACCTCGCCCACGGCCTCGATTACATCCACCACTGCTCCGGCCTCGACTCTACCTTCGTCCACAACCACATCAAGAGCTCCAGCATCATCGTCTCCGAGCAGGACCACCTCGTGCTCGGCGCCAAAATCTGCCACTTCGGTACGGCAGAGCTCTGCGGCGAGACCCAGGCTAGGTCGAACAAAATGGAGGGCACGCGCGGGTACATGGCGCCAGAATTTCAGCTCACCGGAATCGTGACCCAGAAATGCGATGTCTACGCTTTTGGGGTGGTGCTCTTGGAGCTAATCTCCGGGGCGAAGCCGTTGAAGTACATAATGGACGGAAATGGCGGGAGCGACGGGTATAGGAGGGTGAGTTTGATCGAGTCGGCGAGGGAGGCGTTGAGTGGGGGATGTGGCGGGGTGCGGATGTGGGTGGATGGGAGGCTAAACGATTCGTTTCCGATGGATGTGGCGGAGGAGATGGTATTGGTGGCGTTGGAGTGTGTAGAGGAGGATCCGGATAGGCGGCCCGATATGGGTCGGGTTGCCGGTTTGGTTTCGAAGCTGTTTTTGGAGTCGCATAGTTGGGCGGAGAAGATGAGCGTGCCTATTGACATCTCTGTTTCGTTTGCCCCTCGCTGA

Protein Analysis

412

Amino Acids

45.11

Weight (kDa)

8.0

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 137 - 380 7.5e-24 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 140 - 377 3.3e-25 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 58
AasI GACNNNNNNGTC 1 cut(s) 368
Acc36I ACCTGC 1 cut(s) 58
AccB1I GGYRCC 4 cut(s) 473, 524, 731, 820
AccBSI CCGCTC 2 cut(s) 276, 354
AccI GTMKAC 3 cut(s) 498, 507, 867
AccII CGCG 2 cut(s) 808, 810
AccIII TCCGGA 1 cut(s) 1111
AclWI GGATC 3 cut(s) 265, 1103, 1116
AcsI RAATTY 2 cut(s) 512, 827
AcyI GRCGYC 5 cut(s) 9, 474, 525, 732, 821
AdeI CACNNNGTG 1 cut(s) 724
AfaI GTAC 3 cut(s) 754, 815, 923
AfiI CCNNNNNNNGG 4 cut(s) 60, 336, 783, 1130
AgsI TTSAA 1 cut(s) 919
AjnI CCWGG 3 cut(s) 335, 593, 777
AjuI GAANNNNNNNTTGG 2 cut(s) 1148, 1180
AluBI AGCT 9 cut(s) 168, 466, 492, 567, 690, 763, 835, 895, 1159
AluI AGCT 9 cut(s) 168, 466, 492, 567, 690, 763, 835, 895, 1159
Alw21I GWGCWC 4 cut(s) 692, 729, 765, 888
Alw26I GTCTC 2 cut(s) 709, 767
AlwI GGATC 3 cut(s) 265, 1103, 1116
Ama87I CYCGRG 1 cut(s) 562
Aor13HI TCCGGA 1 cut(s) 1111
AoxI GGCC 3 cut(s) 625, 652, 1121
ApeKI GCWGC 3 cut(s) 144, 342, 489
ApoI RAATTY 2 cut(s) 512, 827
ArsI GACNNNNNNTTYG 4 cut(s) 351, 383, 650, 682
AspLEI GCGC 7 cut(s) 342, 381, 476, 527, 734, 810, 823
AspS9I GGNCC 3 cut(s) 51, 715, 1122
AsuC2I CCSGG 1 cut(s) 904
AsuHPI GGTGA 3 cut(s) 82, 829, 976
AsuII TTCGAA 1 cut(s) 1154
AvaI CYCGRG 1 cut(s) 562
AvaII GGWCC 2 cut(s) 51, 715
BaeGI GKGCMC 1 cut(s) 806
BamHI GGATCC 1 cut(s) 1108
BanI GGYRCC 4 cut(s) 473, 524, 731, 820
BanII GRGCYC 3 cut(s) 81, 692, 765
BauI CACGAG 1 cut(s) 722
BbsI GAAGAC 2 cut(s) 364, 366
Bbv12I GWGCWC 4 cut(s) 692, 729, 765, 888
BbvI GCAGC 3 cut(s) 156, 329, 501
BccI CCATC 5 cut(s) 161, 356, 1025, 1051, 1069
BceAI ACGGC 4 cut(s) 20, 640, 771, 898
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 3 cut(s) 337, 595, 779
BcnI CCSGG 1 cut(s) 904
BcoDI GTCTC 2 cut(s) 709, 767
BfaI CTAG 2 cut(s) 503, 783
BfoI RGCGCY 5 cut(s) 343, 477, 528, 735, 824
BfuAI ACCTGC 1 cut(s) 58
BisI GCNGC 8 cut(s) 21, 145, 307, 343, 421, 490, 769, 1121
BlsI GCNGC 8 cut(s) 22, 146, 308, 344, 422, 491, 770, 1122
Bme1390I CCNGG 4 cut(s) 337, 595, 779, 904
Bme18I GGWCC 2 cut(s) 51, 715
BmeT110I CYCGRG 1 cut(s) 562
BmgT120I GGNCC 3 cut(s) 51, 715, 1122
BmiI GGNNCC 5 cut(s) 475, 526, 733, 822, 1110
BmrFI CCNGG 4 cut(s) 337, 595, 779, 904
BmsI GCATC 2 cut(s) 588, 705
BpiI GAAGAC 2 cut(s) 364, 366
BplI GAGNNNNNCTC 4 cut(s) 260, 292, 884, 916
BpmI CTGGAG 4 cut(s) 148, 436, 577, 676
Bpu14I TTCGAA 1 cut(s) 1154
BpuMI CCSGG 1 cut(s) 904
BsaBI GATNNNNATC 1 cut(s) 602
BsaHI GRCGYC 5 cut(s) 9, 474, 525, 732, 821
BsaI GGTCTC 1 cut(s) 767
BsaJI CCNNGG 4 cut(s) 469, 622, 777, 903
BsaWI WCCGGW 2 cut(s) 839, 1111
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 336, 783, 1130
Bse118I RCCGGY 2 cut(s) 521, 1142
Bse8I GATNNNNATC 1 cut(s) 602
BseAI TCCGGA 1 cut(s) 1111
BseBI CCWGG 3 cut(s) 337, 595, 779
BseDI CCNNGG 4 cut(s) 469, 622, 777, 903
BseGI GGATG 7 cut(s) 348, 603, 636, 1010, 1026, 1036, 1066
BseJI GATNNNNATC 1 cut(s) 602
BseLI CCNNNNNNNGG 4 cut(s) 60, 336, 783, 1130
BseSI GKGCMC 1 cut(s) 806
BseXI GCAGC 3 cut(s) 156, 329, 501
BsgI GTGCAG 1 cut(s) 13
Bsh1236I CGCG 2 cut(s) 808, 810
BshFI GGCC 3 cut(s) 627, 654, 1123
BshNI GGYRCC 4 cut(s) 473, 524, 731, 820
BsiHKAI GWGCWC 4 cut(s) 692, 729, 765, 888
BsiHKCI CYCGRG 1 cut(s) 562
BsiSI CCGG 7 cut(s) 486, 522, 651, 840, 903, 1112, 1143
BslFI GGGAC 2 cut(s) 23, 370
BslI CCNNNNNNNGG 4 cut(s) 60, 336, 783, 1130
BsmAI GTCTC 2 cut(s) 709, 767
BsmBI CGTCTC 1 cut(s) 709
BsmFI GGGAC 2 cut(s) 23, 370
BsnI GGCC 3 cut(s) 627, 654, 1123
Bso31I GGTCTC 1 cut(s) 767
BsoBI CYCGRG 1 cut(s) 562
Bsp119I TTCGAA 1 cut(s) 1154
Bsp1286I GDGCHC 6 cut(s) 81, 692, 729, 765, 806, 888
Bsp13I TCCGGA 1 cut(s) 1111
Bsp143I GATC 5 cut(s) 3, 270, 603, 972, 1108
BspANI GGCC 3 cut(s) 627, 654, 1123
BspEI TCCGGA 1 cut(s) 1111
BspFNI CGCG 2 cut(s) 808, 810
BspLI GGNNCC 5 cut(s) 475, 526, 733, 822, 1110
BspMI ACCTGC 1 cut(s) 58
BspPI GGATC 3 cut(s) 265, 1103, 1116
BspT104I TTCGAA 1 cut(s) 1154
BspT107I GGYRCC 4 cut(s) 473, 524, 731, 820
BspTNI GGTCTC 1 cut(s) 767
BsrBI CCGCTC 2 cut(s) 276, 354
BsrFI RCCGGY 2 cut(s) 521, 1142
BssAI RCCGGY 2 cut(s) 521, 1142
BssECI CCNNGG 4 cut(s) 469, 622, 777, 903
BssMI GATC 5 cut(s) 3, 270, 603, 972, 1108
BssNI GRCGYC 5 cut(s) 9, 474, 525, 732, 821
BssSI CACGAG 1 cut(s) 722
Bst2BI CACGAG 1 cut(s) 722
Bst2UI CCWGG 3 cut(s) 337, 595, 779
Bst4CI ACNGT 1 cut(s) 574
BstACI GRCGYC 5 cut(s) 9, 474, 525, 732, 821
BstBI TTCGAA 1 cut(s) 1154
BstC8I GCNNGC 3 cut(s) 523, 806, 1199
BstDSI CCRYGG 1 cut(s) 622
BstF5I GGATG 7 cut(s) 348, 603, 636, 1010, 1026, 1036, 1066
BstFNI CGCG 2 cut(s) 808, 810
BstH2I RGCGCY 5 cut(s) 343, 477, 528, 735, 824
BstHHI GCGC 7 cut(s) 342, 381, 476, 527, 734, 810, 823
BstKTI GATC 5 cut(s) 6, 273, 606, 975, 1111
BstMAI GTCTC 2 cut(s) 709, 767
BstMBI GATC 5 cut(s) 3, 270, 603, 972, 1108
BstMWI GCNNNNNNNGC 6 cut(s) 17, 351, 387, 533, 892, 989
BstNI CCWGG 3 cut(s) 337, 595, 779
BstSCI CCNGG 4 cut(s) 335, 593, 777, 902
BstSLI GKGCMC 1 cut(s) 806
BstUI CGCG 2 cut(s) 808, 810
BstV1I GCAGC 3 cut(s) 156, 329, 501
BstV2I GAAGAC 2 cut(s) 364, 366
BstX2I RGATCY 2 cut(s) 270, 1108
BstYI RGATCY 2 cut(s) 270, 1108
BsuRI GGCC 3 cut(s) 627, 654, 1123
BtgI CCRYGG 1 cut(s) 622
BtgZI GCGATG 1 cut(s) 876
BtsCI GGATG 7 cut(s) 348, 603, 636, 1010, 1026, 1036, 1066
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 1 cut(s) 643
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 3 cut(s) 523, 806, 1199
CfoI GCGC 7 cut(s) 342, 381, 476, 527, 734, 810, 823
Cfr10I RCCGGY 2 cut(s) 521, 1142
Cfr13I GGNCC 3 cut(s) 51, 715, 1122
CseI GACGC 3 cut(s) 17, 73, 371
Csp6I GTAC 3 cut(s) 753, 814, 922
CviAII CATG 1 cut(s) 817
CviQI GTAC 3 cut(s) 753, 814, 922
DinI GGCGCC 4 cut(s) 475, 526, 733, 822
DpnI GATC 5 cut(s) 5, 272, 605, 974, 1110
DpnII GATC 5 cut(s) 3, 270, 603, 972, 1108
DraI TTTAAA 1 cut(s) 226
DraIII CACNNNGTG 1 cut(s) 724
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
EciI GGCGGA 5 cut(s) 7, 124, 268, 1082, 1199
Ecl136II GAGCTC 2 cut(s) 690, 763
Eco24I GRGCYC 3 cut(s) 81, 692, 765
Eco31I GGTCTC 1 cut(s) 767
Eco47I GGWCC 2 cut(s) 51, 715
Eco53kI GAGCTC 2 cut(s) 690, 763
Eco88I CYCGRG 1 cut(s) 562
EcoICRI GAGCTC 2 cut(s) 690, 763
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 3 cut(s) 335, 593, 777
EcoT38I GRGCYC 3 cut(s) 81, 692, 765
EgeI GGCGCC 4 cut(s) 475, 526, 733, 822
EheI GGCGCC 4 cut(s) 475, 526, 733, 822
Esp3I CGTCTC 1 cut(s) 709
FaeI CATG 1 cut(s) 820
FaiI YATR 6 cut(s) 44, 818, 926, 957, 1130, 1176
FaqI GGGAC 2 cut(s) 23, 370
FatI CATG 1 cut(s) 816
FauI CCCGC 4 cut(s) 395, 803, 935, 1004
FblI GTMKAC 3 cut(s) 498, 507, 867
Fnu4HI GCNGC 8 cut(s) 21, 145, 307, 343, 421, 490, 769, 1121
FokI GGATG 7 cut(s) 335, 610, 623, 1017, 1033, 1043, 1073
FriOI GRGCYC 3 cut(s) 81, 692, 765
Fsp4HI GCNGC 8 cut(s) 21, 145, 307, 343, 421, 490, 769, 1121
FspBI CTAG 2 cut(s) 503, 783
GlaI GCGC 7 cut(s) 341, 380, 475, 526, 733, 809, 822
GluI GCNGC 8 cut(s) 21, 145, 307, 343, 421, 490, 769, 1121
GsuI CTGGAG 4 cut(s) 148, 436, 577, 676
HaeII RGCGCY 5 cut(s) 343, 477, 528, 735, 824
HaeIII GGCC 3 cut(s) 627, 654, 1123
HapII CCGG 7 cut(s) 486, 522, 651, 840, 903, 1112, 1143
HgaI GACGC 3 cut(s) 17, 73, 371
HhaI GCGC 7 cut(s) 342, 381, 476, 527, 734, 810, 823
Hin1I GRCGYC 5 cut(s) 9, 474, 525, 732, 821
Hin1II CATG 1 cut(s) 820
Hin6I GCGC 7 cut(s) 340, 379, 474, 525, 732, 808, 821
HinP1I GCGC 7 cut(s) 340, 379, 474, 525, 732, 808, 821
HinfI GANTC 6 cut(s) 104, 659, 843, 977, 1046, 1169
HpaII CCGG 7 cut(s) 486, 522, 651, 840, 903, 1112, 1143
HphI GGTGA 3 cut(s) 82, 829, 976
Hpy166II GTNNAC 4 cut(s) 499, 508, 673, 868
Hpy188I TCNGA 4 cut(s) 268, 358, 709, 1056
Hpy188III TCNNGA 4 cut(s) 49, 685, 847, 1112
Hpy8I GTNNAC 4 cut(s) 499, 508, 673, 868
Hpy99I CGWCG 5 cut(s) 11, 209, 521, 586, 953
HpyAV CCTTC 1 cut(s) 676
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 3 cut(s) 30, 144, 601
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 351, 387, 533, 892, 989
HpySE526I ACGT 1 cut(s) 495
Hsp92I GRCGYC 5 cut(s) 9, 474, 525, 732, 821
Hsp92II CATG 1 cut(s) 820
HspAI GCGC 7 cut(s) 340, 379, 474, 525, 732, 808, 821
KasI GGCGCC 4 cut(s) 473, 524, 731, 820
Kpn2I TCCGGA 1 cut(s) 1111
KroI GCCGGC 1 cut(s) 521
KroNI GCCGGC 1 cut(s) 523
Kzo9I GATC 5 cut(s) 3, 270, 603, 972, 1108
LmnI GCTCC 8 cut(s) 281, 350, 359, 471, 653, 695, 892, 945
Lsp1109I GCAGC 3 cut(s) 156, 329, 501
LweI GCATC 2 cut(s) 588, 705
MaeI CTAG 2 cut(s) 503, 783
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 847
MalI GATC 5 cut(s) 5, 272, 605, 974, 1110
MbiI CCGCTC 2 cut(s) 276, 354
MboI GATC 5 cut(s) 3, 270, 603, 972, 1108
MboII GAAGA 4 cut(s) 364, 371, 568, 1201
MflI RGATCY 2 cut(s) 270, 1108
MhlI GDGCHC 6 cut(s) 81, 692, 729, 765, 806, 888
MluCI AATT 2 cut(s) 512, 827
Mly113I GGCGCC 4 cut(s) 474, 525, 732, 821
MlyI GAGTC 3 cut(s) 653, 986, 1178
MmeI TCCRAC 2 cut(s) 312, 1071
MreI CGCCGGCG 1 cut(s) 521
MroI TCCGGA 1 cut(s) 1111
MroNI GCCGGC 1 cut(s) 521
MseI TTAA 1 cut(s) 225
MspI CCGG 7 cut(s) 486, 522, 651, 840, 903, 1112, 1143
MspR9I CCNGG 4 cut(s) 337, 595, 779, 904
MvaI CCWGG 3 cut(s) 337, 595, 779
MvnI CGCG 2 cut(s) 808, 810
MwoI GCNNNNNNNGC 6 cut(s) 17, 351, 387, 533, 892, 989
NaeI GCCGGC 1 cut(s) 523
NarI GGCGCC 4 cut(s) 474, 525, 732, 821
NciI CCSGG 1 cut(s) 904
NdeII GATC 5 cut(s) 3, 270, 603, 972, 1108
NgoMIV GCCGGC 1 cut(s) 521
NlaIII CATG 1 cut(s) 820
NlaIV GGNNCC 5 cut(s) 475, 526, 733, 822, 1110
NmeAIII GCCGAG 2 cut(s) 450, 708
NmuCI GTSAC 1 cut(s) 847
NspV TTCGAA 1 cut(s) 1154
PaqCI CACCTGC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 523
PfeI GAWTC 3 cut(s) 104, 843, 1046
PflFI GACNNNGTC 1 cut(s) 365
PfoI TCCNGGA 1 cut(s) 593
PkrI GCNGC 8 cut(s) 22, 146, 308, 344, 422, 491, 770, 1122
PleI GAGTC 3 cut(s) 653, 985, 1177
PluTI GGCGCC 4 cut(s) 477, 528, 735, 824
PpsI GAGTC 3 cut(s) 653, 985, 1177
Psp124BI GAGCTC 2 cut(s) 692, 765
Psp6I CCWGG 3 cut(s) 335, 593, 777
PspGI CCWGG 3 cut(s) 335, 593, 777
PspN4I GGNNCC 5 cut(s) 475, 526, 733, 822, 1110
PspPI GGNCC 3 cut(s) 51, 715, 1122
PsrI GAACNNNNNNTAC 2 cut(s) 551, 583
PsuI RGATCY 2 cut(s) 270, 1108
PsyI GACNNNGTC 1 cut(s) 365
RsaI GTAC 3 cut(s) 754, 815, 923
RsaNI GTAC 3 cut(s) 753, 814, 922
SacI GAGCTC 2 cut(s) 692, 765
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 8 cut(s) 21, 145, 307, 343, 421, 490, 769, 1121
Sau3AI GATC 5 cut(s) 3, 270, 603, 972, 1108
Sau96I GGNCC 3 cut(s) 51, 715, 1122
SchI GAGTC 3 cut(s) 653, 986, 1178
ScrFI CCNGG 4 cut(s) 337, 595, 779, 904
SduI GDGCHC 6 cut(s) 81, 692, 729, 765, 806, 888
SfaNI GCATC 2 cut(s) 588, 705
SfoI GGCGCC 4 cut(s) 475, 526, 733, 822
SfuI TTCGAA 1 cut(s) 1154
SgrAI CRCCGGYG 1 cut(s) 521
SinI GGWCC 2 cut(s) 51, 715
Sse9I AATT 2 cut(s) 512, 827
SspDI GGCGCC 4 cut(s) 473, 524, 731, 820
SspMI CTAG 2 cut(s) 503, 783
SstI GAGCTC 2 cut(s) 692, 765
StyD4I CCNGG 4 cut(s) 335, 593, 777, 902
TaaI ACNGT 1 cut(s) 574
TaiI ACGT 1 cut(s) 498
TaqI TCGA 7 cut(s) 6, 156, 630, 657, 788, 975, 1154
TasI AATT 2 cut(s) 512, 827
TatI WGTACW 1 cut(s) 921
TauI GCSGC 5 cut(s) 23, 309, 423, 771, 1123
TfiI GAWTC 3 cut(s) 104, 843, 1046
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 650
TseFI GTSAC 1 cut(s) 847
TseI GCWGC 3 cut(s) 144, 342, 489
Tsp45I GTSAC 1 cut(s) 847
TspGWI ACGGA 2 cut(s) 193, 948
TspRI CASTG 1 cut(s) 650
Tth111I GACNNNGTC 1 cut(s) 365
VpaK11BI GGWCC 2 cut(s) 51, 715
XapI RAATTY 2 cut(s) 512, 827
XmiI GTMKAC 3 cut(s) 498, 507, 867
XspI CTAG 2 cut(s) 503, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.