Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004825

Physical Location & Seq

Genomic Coordinates Forward (+)

41819780 .. 41822642

Gene Structure 2863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0302200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCCAGCCGCCACCAGTAAAACCGGTGCTGCAGAAGCCGCCGGGGTACAGAGACCCAAACCAAACTCCTAGACCGGTTCCAGGGCAGGTTCCCAGAAAACCTGTCCCTCTCCCTCCCTCATTTCATCCACAGCCGAAGTCCAGGCGCAGCAACTGCTGCCGTGTCTTTTGCTGGGTGTGTTGCATTTTGATCCTTGTGATTATTGTCGTCGTCGCGCTGGCAGCCGGAATATTCTTCCTCTTATTCGATCCGAGGCTTCCTCTGGTTTACTTGCGGTCGTTTCAGATACCGCTCTTCAACACCACGGTGAAACCCGGCGGGACTTACCTCGACGCATGGACAGTTCCGGGGATGGAGGTGAAAAACCCCAACGGGAAGTTGGACATATTCTACTCAGGGGTGCAGGCCTACGTCAGCGTCGGGGACCCGAACGACGTAGGGTTGGTGTTGGGGATGAAAGACCTGGCAGGGTTTACGCAGAAGTCGAGTAACACGACGAGTGTTAAGTTCGATTATGTGGTGAAGAACCGGCAGCTGAACGACGAGGTGGCGAAGAAGCTGAAGAGTCAGTATGTGAGTAAAGTGATGAGGGTTGGGGTGGAGGTGAAGGCCAGGTTGGGTTATGTTGTGAAGGGGTGGAGGCTAGGGACGATGAATATTGATGTGTTGTGTGGAGGTGTCACGATGAAGGAGATTCATGCTGGTAATACCATGCCCAAGTGTACAATCTCTGCCTACAAATGGATCCAAATCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

253

Amino Acids

28.08

Weight (kDa)

9.78

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57120
fragaria_vesca	FvH4_3g31560 FvH4_7g19030
malus_domestica	MD01G1105700.v1.1 MD03G1123700.v1.1 MD07G1172200.v1.1 MD12G1106300.v1.1
prunus_persica	Prupe.2G211100_v2.0.a1 Prupe.6G106100_v2.0.a1
pyrus_communis	pycom01g13250 pycom07g16650 pycom17g07150
rosa_chinensis	RchiOBHm_Chr1g0362941 RchiOBHm_Chr5g0058201
rosa_laevigata	RLG00000027610 RLG00000035203
rosa_multiflora	Rmu_sc0000367.1_g000042 Rmu_sc0019019.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022330 Rroxscaffold_4G00293630
rosa_rugosa	Rorug01G0302200 Rorug05G0312700
rosa_samantha	Rh1AG311800 Rh1BG274900 Rh1CG292100 Rh1DG305600 Rh5BG391900 Rh5CG415800 Rh5DG406400
rosa_wichuraiana	Rw1G027630 Rw5G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AccBSI	CCGCTC	1 cut(s)	295
AccII	CGCG	1 cut(s)	218
AciI	CCGC	5 cut(s)	11, 41, 277, 293, 321
AclWI	GGATC	4 cut(s)	187, 245, 742, 755
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	2 cut(s)	50, 727
AfiI	CCNNNNNNNGG	2 cut(s)	83, 744
AgeI	ACCGGT	2 cut(s)	25, 76
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	4 cut(s)	82, 143, 465, 614
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AleI	CACNNNNGTG	1 cut(s)	308
AluBI	AGCT	2 cut(s)	538, 562
AluI	AGCT	2 cut(s)	538, 562
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	4 cut(s)	187, 245, 742, 755
AlwNI	CAGNNNCTG	1 cut(s)	156
AoxI	GGCC	3 cut(s)	3, 408, 612
ApeKI	GCWGC	5 cut(s)	31, 150, 159, 224, 535
AsiGI	ACCGGT	2 cut(s)	25, 76
AspLEI	GCGC	2 cut(s)	150, 220
AspS9I	GGNCC	2 cut(s)	4, 427
AsuC2I	CCSGG	3 cut(s)	45, 318, 351
AsuHPI	GGTGA	4 cut(s)	322, 373, 535, 619
AvaII	GGWCC	1 cut(s)	427
BamHI	GGATCC	1 cut(s)	747
BbvI	GCAGC	5 cut(s)	18, 146, 162, 236, 547
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	4 cut(s)	84, 145, 467, 616
BcnI	CCSGG	3 cut(s)	45, 318, 351
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	72, 647
BfmI	CTRYAG	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	79
BisI	GCNGC	7 cut(s)	11, 32, 41, 151, 160, 225, 536
BlsI	GCNGC	7 cut(s)	12, 33, 42, 152, 161, 226, 537
Bme1390I	CCNGG	7 cut(s)	45, 84, 145, 318, 351, 467, 616
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	2 cut(s)	4, 427
BmiI	GGNNCC	5 cut(s)	81, 93, 428, 429, 749
BmrFI	CCNGG	7 cut(s)	45, 84, 145, 318, 351, 467, 616
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
BpuMI	CCSGG	3 cut(s)	45, 318, 351
BsaBI	GATNNNNATC	1 cut(s)	752
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	5 cut(s)	44, 83, 254, 306, 350
BsaWI	WCCGGW	2 cut(s)	25, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 744
Bse118I	RCCGGY	3 cut(s)	25, 76, 531
Bse1I	ACTGG	1 cut(s)	17
Bse8I	GATNNNNATC	1 cut(s)	752
BseBI	CCWGG	4 cut(s)	84, 145, 467, 616
BseDI	CCNNGG	5 cut(s)	44, 83, 254, 306, 350
BseGI	GGATG	3 cut(s)	127, 360, 462
BseJI	GATNNNNATC	1 cut(s)	752
BseLI	CCNNNNNNNGG	2 cut(s)	83, 744
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	17
BseXI	GCAGC	5 cut(s)	18, 146, 162, 236, 547
BseYI	CCCAGC	2 cut(s)	6, 174
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	281
BshFI	GGCC	3 cut(s)	5, 410, 614
BshTI	ACCGGT	2 cut(s)	25, 76
BsiEI	CGRYCG	1 cut(s)	281
BsiSI	CCGG	7 cut(s)	26, 44, 77, 228, 318, 350, 532
BslFI	GGGAC	4 cut(s)	92, 337, 440, 664
BslI	CCNNNNNNNGG	2 cut(s)	83, 744
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	4 cut(s)	92, 337, 440, 664
BsnI	GGCC	3 cut(s)	5, 410, 614
Bso31I	GGTCTC	1 cut(s)	48
Bsp1407I	TGTACA	1 cut(s)	725
Bsp143I	GATC	3 cut(s)	192, 250, 747
BspACI	CCGC	5 cut(s)	11, 41, 277, 293, 321
BspANI	GGCC	3 cut(s)	5, 410, 614
BspCNI	CTCAG	1 cut(s)	410
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	5 cut(s)	81, 93, 428, 429, 749
BspMAI	CTGCAG	1 cut(s)	36
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	4 cut(s)	187, 245, 742, 755
BspQI	GCTCTTC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	48
BsrBI	CCGCTC	1 cut(s)	295
BsrFI	RCCGGY	3 cut(s)	25, 76, 531
BsrGI	TGTACA	1 cut(s)	725
BsrI	ACTGG	1 cut(s)	17
BssAI	RCCGGY	3 cut(s)	25, 76, 531
BssECI	CCNNGG	5 cut(s)	44, 83, 254, 306, 350
BssMI	GATC	3 cut(s)	192, 250, 747
Bst2UI	CCWGG	4 cut(s)	84, 145, 467, 616
Bst4CI	ACNGT	2 cut(s)	310, 346
Bst6I	CTCTTC	2 cut(s)	302, 560
BstAPI	GCANNNNNTGC	2 cut(s)	156, 159
BstAUI	TGTACA	1 cut(s)	725
BstC8I	GCNNGC	2 cut(s)	222, 408
BstDEI	CTNAG	1 cut(s)	397
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	127, 360, 462
BstFNI	CGCG	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	150, 220
BstKTI	GATC	3 cut(s)	195, 253, 750
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	3 cut(s)	192, 250, 747
BstMCI	CGRYCG	1 cut(s)	281
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 40, 156, 159, 224
BstNI	CCWGG	4 cut(s)	84, 145, 467, 616
BstSCI	CCNGG	7 cut(s)	43, 82, 143, 316, 349, 465, 614
BstSFI	CTRYAG	1 cut(s)	32
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	5 cut(s)	18, 146, 162, 236, 547
BstX2I	RGATCY	1 cut(s)	747
BstYI	RGATCY	1 cut(s)	747
BsuRI	GGCC	3 cut(s)	5, 410, 614
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	127, 360, 462
BtsIMutI	CAGTG	1 cut(s)	757
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	2 cut(s)	222, 408
CaiI	CAGNNNCTG	1 cut(s)	156
CfoI	GCGC	2 cut(s)	150, 220
Cfr10I	RCCGGY	3 cut(s)	25, 76, 531
Cfr13I	GGNCC	2 cut(s)	4, 427
CseI	GACGC	2 cut(s)	344, 409
Csp6I	GTAC	2 cut(s)	49, 726
CspAI	ACCGGT	2 cut(s)	25, 76
CviAII	CATG	3 cut(s)	339, 701, 715
CviQI	GTAC	2 cut(s)	49, 726
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	3 cut(s)	194, 252, 749
DpnII	GATC	3 cut(s)	192, 250, 747
Eam1104I	CTCTTC	2 cut(s)	302, 560
EarI	CTCTTC	2 cut(s)	302, 560
Eco147I	AGGCCT	1 cut(s)	410
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	4 cut(s)	82, 143, 465, 614
FaeI	CATG	3 cut(s)	342, 704, 718
FaiI	YATR	7 cut(s)	340, 389, 519, 576, 627, 702, 716
FaqI	GGGAC	4 cut(s)	92, 337, 440, 664
FatI	CATG	3 cut(s)	338, 700, 714
FauI	CCCGC	1 cut(s)	314
Fnu4HI	GCNGC	7 cut(s)	11, 32, 41, 151, 160, 225, 536
FokI	GGATG	3 cut(s)	114, 367, 469
Fsp4HI	GCNGC	7 cut(s)	11, 32, 41, 151, 160, 225, 536
FspBI	CTAG	2 cut(s)	72, 647
GlaI	GCGC	2 cut(s)	149, 219
GluI	GCNGC	7 cut(s)	11, 32, 41, 151, 160, 225, 536
GsaI	CCCAGC	2 cut(s)	10, 178
HaeIII	GGCC	3 cut(s)	5, 410, 614
HapII	CCGG	7 cut(s)	26, 44, 77, 228, 318, 350, 532
HgaI	GACGC	2 cut(s)	344, 409
HhaI	GCGC	2 cut(s)	150, 220
Hin1II	CATG	3 cut(s)	342, 704, 718
Hin6I	GCGC	2 cut(s)	148, 218
HinP1I	GCGC	2 cut(s)	148, 218
HinfI	GANTC	2 cut(s)	568, 697
HpaII	CCGG	7 cut(s)	26, 44, 77, 228, 318, 350, 532
HphI	GGTGA	4 cut(s)	322, 373, 535, 619
Hpy166II	GTNNAC	3 cut(s)	271, 477, 726
Hpy188I	TCNGA	2 cut(s)	255, 288
Hpy188III	TCNNGA	1 cut(s)	685
Hpy8I	GTNNAC	3 cut(s)	271, 477, 726
Hpy99I	CGWCG	7 cut(s)	215, 218, 338, 425, 440, 502, 548
HpyAV	CCTTC	3 cut(s)	604, 628, 685
HpyCH4III	ACNGT	2 cut(s)	310, 346
HpyCH4IV	ACGT	2 cut(s)	414, 438
HpyCH4V	TGCA	3 cut(s)	34, 186, 406
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 40, 156, 159, 224
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	2 cut(s)	414, 438
Hsp92II	CATG	3 cut(s)	342, 704, 718
HspAI	GCGC	2 cut(s)	148, 218
KflI	GGGWCCC	1 cut(s)	427
Kzo9I	GATC	3 cut(s)	192, 250, 747
LguI	GCTCTTC	1 cut(s)	302
Lsp1109I	GCAGC	5 cut(s)	18, 146, 162, 236, 547
MaeI	CTAG	2 cut(s)	72, 647
MaeII	ACGT	2 cut(s)	414, 438
MaeIII	GTNAC	2 cut(s)	491, 682
MalI	GATC	3 cut(s)	194, 252, 749
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	3 cut(s)	192, 250, 747
MboII	GAAGA	5 cut(s)	229, 289, 538, 568, 577
MflI	RGATCY	1 cut(s)	747
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	363
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	538
MspI	CCGG	7 cut(s)	26, 44, 77, 228, 318, 350, 532
MspR9I	CCNGG	7 cut(s)	45, 84, 145, 318, 351, 467, 616
MvaI	CCWGG	4 cut(s)	84, 145, 467, 616
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	5 cut(s)	37, 40, 156, 159, 224
NciI	CCSGG	3 cut(s)	45, 318, 351
NdeII	GATC	3 cut(s)	192, 250, 747
NlaIII	CATG	3 cut(s)	342, 704, 718
NlaIV	GGNNCC	5 cut(s)	81, 93, 428, 429, 749
NmuCI	GTSAC	1 cut(s)	682
OliI	CACNNNNGTG	1 cut(s)	308
PceI	AGGCCT	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	2 cut(s)	485, 494
PfeI	GAWTC	1 cut(s)	697
PinAI	ACCGGT	2 cut(s)	25, 76
PkrI	GCNGC	7 cut(s)	12, 33, 42, 152, 161, 226, 537
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	4 cut(s)	82, 143, 465, 614
PspFI	CCCAGC	2 cut(s)	6, 174
PspGI	CCWGG	4 cut(s)	82, 143, 465, 614
PspN4I	GGNNCC	5 cut(s)	81, 93, 428, 429, 749
PspPI	GGNCC	2 cut(s)	4, 427
PspPPI	RGGWCCY	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	36
PstNI	CAGNNNCTG	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	747
PvuII	CAGCTG	1 cut(s)	538
RsaI	GTAC	2 cut(s)	50, 727
RsaNI	GTAC	2 cut(s)	49, 726
RseI	CAYNNNNRTG	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	7 cut(s)	11, 32, 41, 151, 160, 225, 536
Sau3AI	GATC	3 cut(s)	192, 250, 747
Sau96I	GGNCC	2 cut(s)	4, 427
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	7 cut(s)	45, 84, 145, 318, 351, 467, 616
SfcI	CTRYAG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	308
SseBI	AGGCCT	1 cut(s)	410
SsiI	CCGC	5 cut(s)	11, 41, 277, 293, 321
SspI	AATATT	2 cut(s)	234, 661
SspMI	CTAG	2 cut(s)	72, 647
StuI	AGGCCT	1 cut(s)	410
StyD4I	CCNGG	7 cut(s)	43, 82, 143, 316, 349, 465, 614
TaaI	ACNGT	2 cut(s)	310, 346
TaiI	ACGT	2 cut(s)	417, 441
TaqI	TCGA	4 cut(s)	249, 333, 488, 513
TatI	WGTACW	1 cut(s)	725
TauI	GCSGC	2 cut(s)	13, 43
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	5 cut(s)	31, 150, 159, 224, 535
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	5 cut(s)	116, 473, 671, 689, 704
VpaK11BI	GGWCC	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XspI	CTAG	2 cut(s)	72, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.