Rh1BG274900

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
41114082 .. 41115792
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG274900.1

Sequence Viewer

Length: 1179 bp
ATGTGCAAGACCAAAAAGAGCACGCAGGCGATTGAGCCCCGGAGCCCCCTCAAGCCCCGACCCTCCAAGTCCTTCTCCTCCGACCCTTTATCCGGCAACGTCAGCACCACCGGCGGCAACAACTCCAGCTACGGCAACTTCTCCAAATCCTCCACCTCCTCCTCCTCCGTCGCCTCCCTCAAGTCCCTCAAGTCCTCCCTCCCCGAAAACCCCGTGATCTATGATACCTCTGAGATCTCCTCCTCCACCAACAACTTCCTCAACCACCGCCTCTCCTCCTCCACCACCTCCTCCTCCTGGCGCTGCACCCTCCGCGGCAAAGACTCCGTCGTTTTCCAGCGCAGGTCCCGCACCCCGATCGACCTCCCGGACCTCCAGCAGAGCCTCTCCCTCATCTCCCGCAGCCACCACAGCAGCCTCATCAAGCTCCTCGGCGCGTCGCTCTCCGGCAGCTACGTCTACCTCGTCTACGAGTTCGTCGCCGGCGCCAACCTCGCCGACTGCCTCCGCAACCCTAACAACCCGAGCTACACAGTCCTCTCCACCTGGCTCTCGCGGCTGCAGATCGCCACCGACCTAGCTCACGGCCTGGACTACATCCACCGCTGCTCAGGCCTCGGCTCCGGCTTGGTCCACAACCACATCAAGAGCTCGAGTATCATTGTTACGGAAGCAACCCTGAACGCCAAGATCTGCCACTTTGGCACGGCCGAGCTCTGCGGAGAGAGCCGGGCGAGGTCGAAGAAGGTAGAAGGAACAAGAGGCTACATGGCGCCGGAGTTTCAAGTGAGCGGGGTCGTCACCCAAAAATGCGATGTGTATGCTTTTGGGGTTGTGATGCTGGAGCTGGTCTCCGGGGAGGAGCCGTTGAAGTATAAGATGGAGGTGGAAGACGGCGGGTATAAGAGAGTGAGTGTTATAGAGACGGCCAGAGAAGCGGTGAAAAGTGTTGGTGGAGTGAGGAGGTGGGTGGATAGGAGGTTGAAGGACTCGTTTCCGATGGAGGTGGCGGAGAAGATGGTGCAGGTGGCGCTGGAGTGTGTGGACGATGACCCGGAAAGGAGGCCGGATATGGGTCGGGTTGCGGGTTTGGTTTCCAAGTTGTTTTTGGAGTCGCAGAAATGGGCGGAGAATATTGGCATGCCCACTGACATCTCTGTTTCATTGGCTGCGAGGTGA

Protein Analysis

392

Amino Acids

42.8

Weight (kDa)

9.08

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 122 - 361 9.3e-27 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 126 - 358 1.1e-26 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1015
Acc36I ACCTGC 2 cut(s) 333, 1015
AccB1I GGYRCC 2 cut(s) 485, 772
AccBSI CCGCTC 1 cut(s) 792
AccI GTMKAC 2 cut(s) 459, 468
AccII CGCG 3 cut(s) 315, 437, 556
AcoI YGGCCR 2 cut(s) 708, 927
AcyI GRCGYC 2 cut(s) 486, 773
AfiI CCNNNNNNNGG 3 cut(s) 92, 297, 1073
AgsI TTSAA 3 cut(s) 785, 871, 985
AjnI CCWGG 3 cut(s) 296, 545, 588
AluBI AGCT 8 cut(s) 129, 427, 453, 528, 581, 651, 715, 847
AluI AGCT 8 cut(s) 129, 427, 453, 528, 581, 651, 715, 847
Alw21I GWGCWC 3 cut(s) 23, 653, 717
Alw26I GTCTC 2 cut(s) 856, 917
Ama87I CYCGRG 2 cut(s) 523, 652
AoxI GGCC 5 cut(s) 586, 613, 708, 927, 1064
ApeKI GCWGC 7 cut(s) 303, 402, 414, 450, 559, 606, 1169
ArsI GACNNNNNNTTYG 2 cut(s) 312, 344
AspLEI GCGC 6 cut(s) 303, 342, 437, 488, 775, 1033
AspS9I GGNCC 3 cut(s) 345, 370, 631
AsuC2I CCSGG 5 cut(s) 40, 368, 731, 856, 1055
AsuHPI GGTGA 2 cut(s) 793, 952
AvaI CYCGRG 2 cut(s) 523, 652
AvaII GGWCC 3 cut(s) 345, 370, 631
BanI GGYRCC 2 cut(s) 485, 772
BanII GRGCYC 4 cut(s) 39, 47, 653, 717
BbsI GAAGAC 1 cut(s) 897
Bbv12I GWGCWC 3 cut(s) 23, 653, 717
BbvI GCAGC 7 cut(s) 290, 414, 426, 462, 546, 593, 1156
BccI CCATC 3 cut(s) 874, 994, 1012
BceAI ACGGC 6 cut(s) 148, 601, 723, 850, 910, 942
BcgI CGANNNNNNTGC 4 cut(s) 340, 374, 803, 837
BciT130I CCWGG 3 cut(s) 298, 547, 590
BcnI CCSGG 5 cut(s) 40, 368, 731, 856, 1055
BcoDI GTCTC 2 cut(s) 856, 917
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 560
BfoI RGCGCY 4 cut(s) 304, 489, 776, 1034
BfuAI ACCTGC 2 cut(s) 333, 1015
BglI GCCNNNNNGGC 1 cut(s) 702
BglII AGATCT 2 cut(s) 234, 690
Bme1390I CCNGG 8 cut(s) 40, 298, 368, 547, 590, 731, 856, 1055
Bme18I GGWCC 3 cut(s) 345, 370, 631
BmeT110I CYCGRG 2 cut(s) 523, 652
BmgT120I GGNCC 3 cut(s) 345, 370, 631
BmiI GGNNCC 6 cut(s) 44, 347, 487, 622, 774, 864
BmrFI CCNGG 8 cut(s) 40, 298, 368, 547, 590, 731, 856, 1055
BmsI GCATC 1 cut(s) 828
BpiI GAAGAC 1 cut(s) 897
BplI GAGNNNNNCTC 4 cut(s) 224, 256, 836, 868
BpmI CTGGAG 4 cut(s) 109, 359, 863, 1055
Bpu10I CCTNAGC 1 cut(s) 610
BpuEI CTTGAG 3 cut(s) 35, 164, 173
BpuMI CCSGG 5 cut(s) 40, 368, 731, 856, 1055
BsaHI GRCGYC 2 cut(s) 486, 773
BsaI GGTCTC 1 cut(s) 856
BsaJI CCNNGG 5 cut(s) 38, 313, 430, 616, 855
BsaXI ACNNNNNCTCC 4 cut(s) 257, 287, 851, 881
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 297, 1073
Bse118I RCCGGY 2 cut(s) 110, 482
BseBI CCWGG 3 cut(s) 298, 547, 590
BseDI CCNNGG 5 cut(s) 38, 313, 430, 616, 855
BseGI GGATG 1 cut(s) 597
BseLI CCNNNNNNNGG 3 cut(s) 92, 297, 1073
BseMII CTCAG 2 cut(s) 222, 624
BseX3I CGGCCG 1 cut(s) 708
BseXI GCAGC 7 cut(s) 290, 414, 426, 462, 546, 593, 1156
BsgI GTGCAG 2 cut(s) 289, 1043
Bsh1236I CGCG 3 cut(s) 315, 437, 556
Bsh1285I CGRYCG 2 cut(s) 360, 711
BshFI GGCC 5 cut(s) 588, 615, 710, 929, 1066
BshNI GGYRCC 2 cut(s) 485, 772
BsiEI CGRYCG 2 cut(s) 360, 711
BsiHKAI GWGCWC 3 cut(s) 23, 653, 717
BsiHKCI CYCGRG 2 cut(s) 523, 652
BslFI GGGAC 2 cut(s) 169, 331
BslI CCNNNNNNNGG 3 cut(s) 92, 297, 1073
BsmAI GTCTC 2 cut(s) 856, 917
BsmBI CGTCTC 1 cut(s) 917
BsmFI GGGAC 2 cut(s) 169, 331
BsnI GGCC 5 cut(s) 588, 615, 710, 929, 1066
Bso31I GGTCTC 1 cut(s) 856
BsoBI CYCGRG 2 cut(s) 523, 652
Bsp1286I GDGCHC 5 cut(s) 23, 39, 47, 653, 717
Bsp143I GATC 5 cut(s) 216, 234, 357, 564, 690
BspANI GGCC 5 cut(s) 588, 615, 710, 929, 1066
BspCNI CTCAG 2 cut(s) 223, 623
BspFNI CGCG 3 cut(s) 315, 437, 556
BspLI GGNNCC 6 cut(s) 44, 347, 487, 622, 774, 864
BspMAI CTGCAG 1 cut(s) 564
BspMI ACCTGC 2 cut(s) 333, 1015
BspT107I GGYRCC 2 cut(s) 485, 772
BspTNI GGTCTC 1 cut(s) 856
BsrBI CCGCTC 1 cut(s) 792
BsrFI RCCGGY 2 cut(s) 110, 482
BssAI RCCGGY 2 cut(s) 110, 482
BssECI CCNNGG 5 cut(s) 38, 313, 430, 616, 855
BssMI GATC 5 cut(s) 216, 234, 357, 564, 690
BssNI GRCGYC 2 cut(s) 486, 773
Bst2UI CCWGG 3 cut(s) 298, 547, 590
Bst4CI ACNGT 1 cut(s) 535
BstACI GRCGYC 2 cut(s) 486, 773
BstC8I GCNNGC 4 cut(s) 23, 27, 484, 1142
BstDEI CTNAG 2 cut(s) 231, 610
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 597
BstFNI CGCG 3 cut(s) 315, 437, 556
BstH2I RGCGCY 4 cut(s) 304, 489, 776, 1034
BstHHI GCGC 6 cut(s) 303, 342, 437, 488, 775, 1033
BstKTI GATC 5 cut(s) 219, 237, 360, 567, 693
BstMAI GTCTC 2 cut(s) 856, 917
BstMBI GATC 5 cut(s) 216, 234, 357, 564, 690
BstMCI CGRYCG 2 cut(s) 360, 711
BstNI CCWGG 3 cut(s) 298, 547, 590
BstNSI RCATGY 1 cut(s) 1144
BstSCI CCNGG 8 cut(s) 38, 296, 366, 545, 588, 729, 854, 1053
BstSFI CTRYAG 1 cut(s) 560
BstUI CGCG 3 cut(s) 315, 437, 556
BstV1I GCAGC 7 cut(s) 290, 414, 426, 462, 546, 593, 1156
BstV2I GAAGAC 1 cut(s) 897
BstX2I RGATCY 2 cut(s) 234, 690
BstYI RGATCY 2 cut(s) 234, 690
BstZI CGGCCG 1 cut(s) 708
BsuRI GGCC 5 cut(s) 588, 615, 710, 929, 1066
BtgI CCRYGG 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 828
BtsCI GGATG 1 cut(s) 597
BtsIMutI CAGTG 1 cut(s) 1146
BveI ACCTGC 2 cut(s) 333, 1015
Cac8I GCNNGC 4 cut(s) 23, 27, 484, 1142
CfoI GCGC 6 cut(s) 303, 342, 437, 488, 775, 1033
Cfr10I RCCGGY 2 cut(s) 110, 482
Cfr13I GGNCC 3 cut(s) 345, 370, 631
Cfr42I CCGCGG 1 cut(s) 316
CseI GACGC 1 cut(s) 426
CviAII CATG 2 cut(s) 769, 1141
DdeI CTNAG 2 cut(s) 231, 610
DinI GGCGCC 2 cut(s) 487, 774
DpnI GATC 5 cut(s) 218, 236, 359, 566, 692
DpnII GATC 5 cut(s) 216, 234, 357, 564, 690
EaeI YGGCCR 2 cut(s) 708, 927
EagI CGGCCG 1 cut(s) 708
EciI GGCGGA 2 cut(s) 1025, 1142
Ecl136II GAGCTC 2 cut(s) 651, 715
EclXI CGGCCG 1 cut(s) 708
Eco147I AGGCCT 1 cut(s) 615
Eco24I GRGCYC 4 cut(s) 39, 47, 653, 717
Eco31I GGTCTC 1 cut(s) 856
Eco47I GGWCC 3 cut(s) 345, 370, 631
Eco52I CGGCCG 1 cut(s) 708
Eco53kI GAGCTC 2 cut(s) 651, 715
Eco88I CYCGRG 2 cut(s) 523, 652
EcoICRI GAGCTC 2 cut(s) 651, 715
EcoO109I RGGNCCY 1 cut(s) 345
EcoRII CCWGG 3 cut(s) 296, 545, 588
EcoT38I GRGCYC 4 cut(s) 39, 47, 653, 717
EgeI GGCGCC 2 cut(s) 487, 774
EheI GGCGCC 2 cut(s) 487, 774
Esp3I CGTCTC 1 cut(s) 917
FaeI CATG 2 cut(s) 772, 1144
FaiI YATR 8 cut(s) 222, 770, 822, 876, 903, 920, 1073, 1142
FaqI GGGAC 2 cut(s) 169, 331
FatI CATG 2 cut(s) 768, 1140
FauI CCCGC 5 cut(s) 356, 407, 785, 890, 1078
FblI GTMKAC 2 cut(s) 459, 468
FokI GGATG 1 cut(s) 584
FriOI GRGCYC 4 cut(s) 39, 47, 653, 717
FspBI CTAG 1 cut(s) 578
GlaI GCGC 6 cut(s) 302, 341, 436, 487, 774, 1032
GsuI CTGGAG 4 cut(s) 109, 359, 863, 1055
HaeII RGCGCY 4 cut(s) 304, 489, 776, 1034
HaeIII GGCC 5 cut(s) 588, 615, 710, 929, 1066
HgaI GACGC 1 cut(s) 426
HhaI GCGC 6 cut(s) 303, 342, 437, 488, 775, 1033
Hin1I GRCGYC 2 cut(s) 486, 773
Hin1II CATG 2 cut(s) 772, 1144
Hin6I GCGC 6 cut(s) 301, 340, 435, 486, 773, 1031
HinP1I GCGC 6 cut(s) 301, 340, 435, 486, 773, 1031
HinfI GANTC 3 cut(s) 323, 989, 1112
HphI GGTGA 2 cut(s) 793, 952
Hpy166II GTNNAC 4 cut(s) 460, 469, 634, 1045
Hpy188I TCNGA 3 cut(s) 82, 232, 999
Hpy188III TCNNGA 1 cut(s) 646
Hpy8I GTNNAC 4 cut(s) 460, 469, 634, 1045
Hpy99I CGWCG 4 cut(s) 173, 332, 442, 482
HpyAV CCTTC 4 cut(s) 82, 739, 746, 979
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 2 cut(s) 99, 456
HpyCH4V TGCA 4 cut(s) 6, 306, 562, 1024
HpyF3I CTNAG 2 cut(s) 231, 610
HpySE526I ACGT 2 cut(s) 99, 456
Hsp92I GRCGYC 2 cut(s) 486, 773
Hsp92II CATG 2 cut(s) 772, 1144
HspAI GCGC 6 cut(s) 301, 340, 435, 486, 773, 1031
KasI GGCGCC 2 cut(s) 485, 772
KroI GCCGGC 1 cut(s) 482
KroNI GCCGGC 1 cut(s) 484
KspI CCGCGG 1 cut(s) 316
Kzo9I GATC 5 cut(s) 216, 234, 357, 564, 690
LmnI GCTCC 5 cut(s) 42, 432, 626, 844, 862
Lsp1109I GCAGC 7 cut(s) 290, 414, 426, 462, 546, 593, 1156
LweI GCATC 1 cut(s) 828
MaeI CTAG 1 cut(s) 578
MaeII ACGT 2 cut(s) 99, 456
MaeIII GTNAC 2 cut(s) 664, 799
MalI GATC 5 cut(s) 218, 236, 359, 566, 692
MbiI CCGCTC 1 cut(s) 792
MboI GATC 5 cut(s) 216, 234, 357, 564, 690
MboII GAAGA 3 cut(s) 754, 902, 1027
MflI RGATCY 2 cut(s) 234, 690
MhlI GDGCHC 5 cut(s) 23, 39, 47, 653, 717
Mly113I GGCGCC 2 cut(s) 486, 773
MlyI GAGTC 3 cut(s) 317, 983, 1121
MmeI TCCRAC 1 cut(s) 105
MreI CGCCGGCG 1 cut(s) 482
MroNI GCCGGC 1 cut(s) 482
MspA1I CMGCKG 2 cut(s) 315, 606
MspR9I CCNGG 8 cut(s) 40, 298, 368, 547, 590, 731, 856, 1055
MvaI CCWGG 3 cut(s) 298, 547, 590
MvnI CGCG 3 cut(s) 315, 437, 556
NaeI GCCGGC 1 cut(s) 484
NarI GGCGCC 2 cut(s) 486, 773
NciI CCSGG 5 cut(s) 40, 368, 731, 856, 1055
NdeII GATC 5 cut(s) 216, 234, 357, 564, 690
NgoMIV GCCGGC 1 cut(s) 482
NlaIII CATG 2 cut(s) 772, 1144
NlaIV GGNNCC 6 cut(s) 44, 347, 487, 622, 774, 864
NmeAIII GCCGAG 3 cut(s) 411, 597, 736
NmuCI GTSAC 1 cut(s) 799
NspI RCATGY 1 cut(s) 1144
PaeI GCATGC 1 cut(s) 1144
PaeR7I CTCGAG 1 cut(s) 652
PaqCI CACCTGC 1 cut(s) 1015
PceI AGGCCT 1 cut(s) 615
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PdiI GCCGGC 1 cut(s) 484
PflFI GACNNNGTC 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 366
Ple19I CGATCG 1 cut(s) 360
PleI GAGTC 3 cut(s) 317, 983, 1120
PluTI GGCGCC 2 cut(s) 489, 776
PpsI GAGTC 3 cut(s) 317, 983, 1120
PpuMI RGGWCCY 1 cut(s) 345
Psp124BI GAGCTC 2 cut(s) 653, 717
Psp5II RGGWCCY 1 cut(s) 345
Psp6I CCWGG 3 cut(s) 296, 545, 588
PspGI CCWGG 3 cut(s) 296, 545, 588
PspN4I GGNNCC 6 cut(s) 44, 347, 487, 622, 774, 864
PspPI GGNCC 3 cut(s) 345, 370, 631
PspPPI RGGWCCY 1 cut(s) 345
PspXI VCTCGAGB 1 cut(s) 652
PstI CTGCAG 1 cut(s) 564
PsuI RGATCY 2 cut(s) 234, 690
PsyI GACNNNGTC 1 cut(s) 326
PvuI CGATCG 1 cut(s) 360
SacI GAGCTC 2 cut(s) 653, 717
SacII CCGCGG 1 cut(s) 316
Sau3AI GATC 5 cut(s) 216, 234, 357, 564, 690
Sau96I GGNCC 3 cut(s) 345, 370, 631
SchI GAGTC 3 cut(s) 317, 983, 1121
ScrFI CCNGG 8 cut(s) 40, 298, 368, 547, 590, 731, 856, 1055
SduI GDGCHC 5 cut(s) 23, 39, 47, 653, 717
SfaNI GCATC 1 cut(s) 828
SfcI CTRYAG 1 cut(s) 560
SfoI GGCGCC 2 cut(s) 487, 774
Sfr274I CTCGAG 1 cut(s) 652
Sfr303I CCGCGG 1 cut(s) 316
SgrAI CRCCGGYG 2 cut(s) 110, 482
SgrBI CCGCGG 1 cut(s) 316
SinI GGWCC 3 cut(s) 345, 370, 631
SlaI CTCGAG 1 cut(s) 652
SmlI CTYRAG 4 cut(s) 50, 179, 188, 652
SmoI CTYRAG 4 cut(s) 50, 179, 188, 652
SphI GCATGC 1 cut(s) 1144
SseBI AGGCCT 1 cut(s) 615
SspDI GGCGCC 2 cut(s) 485, 772
SspI AATATT 1 cut(s) 1135
SspMI CTAG 1 cut(s) 578
SstI GAGCTC 2 cut(s) 653, 717
StuI AGGCCT 1 cut(s) 615
StyD4I CCNGG 8 cut(s) 38, 296, 366, 545, 588, 729, 854, 1053
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 2 cut(s) 102, 459
TaqI TCGA 3 cut(s) 360, 653, 740
TauI GCSGC 3 cut(s) 117, 318, 559
TscAI CASTG 1 cut(s) 1153
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 7 cut(s) 303, 402, 414, 450, 559, 606, 1169
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 1 cut(s) 1152
TspGWI ACGGA 3 cut(s) 157, 316, 683
TspRI CASTG 1 cut(s) 1153
Tth111I GACNNNGTC 1 cut(s) 326
VpaK11BI GGWCC 3 cut(s) 345, 370, 631
XceI RCATGY 1 cut(s) 1144
XcmI CCANNNNNNNNNTGG 1 cut(s) 1105
XhoI CTCGAG 1 cut(s) 652
XmiI GTMKAC 2 cut(s) 459, 468
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.