Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004825

Physical Location & Seq

Genomic Coordinates Reverse (-)

15808895 .. 15810094

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTGCAAGACCAAAAAGAGCACGCAGGCGATTGAGCCATCCCGGAGCCCCCGCAAGCCCCGGACCTCCAAGTCCTTCTCCTCCTCCTCCAACCCCAACGACCCTTTCTCCGGCAACTACTCCGGCACCACCGGCGGCAACAACTCCGCCAGCTACGACGGCAACTCCAAATCCTCCACCGCCTCCTCCGTTGCCTCCCTCAAGTCCCTCAAGTCCTCCCTCCCCGAAAACCCCATGATCTACGACACCTCCGAGATCTCCTCCTCCACCAACAACTTCCTTAGCCACCGCCTCTCCTCCTCCTCCACCTCCACCTCTTGGCGCTGCACCCTCCGCGGCAAAGACGCCGTCGTCTTCCAGCGCAAGTCCCGCACCCCGATCGACATCCCTGACCTCCAGCAGAGCCTCTCCCTCATCTCCCGTTCCCACCACTCCAGCATCATCAAGCTCCTCGGCACGTCTCTCTCCGGCAGCTACGTCTACCTCGTCTACGAGTTCGTTGACGGCGCCAACCTCGCTGACTGCCTCCGCAACCCTAACAACCCAAGCTTCACGGTCCTCTCCACCTGGCTCTCCCGCCTTCAGATCGCCACCGACCTAGCTCACGGCCTCGACTACATCCACCGCTGCTCCGGCCTCGGCTCCGGTTTAGTCCACAACCACATCAAGAGCTCAAGCATCATTGTCACTTCGACTACACTGAACGCGAAGATCTGCCACTTCGGCACGGCGGAGCTTACAGGAGAGAGCAGAGCCAGGTCGAAGAAGGTGGAAGGAACAAGAGGGTATATGGCGCCGGAGTTTCAGCTCAGCGGAGTGGTGACGCAGAAATGCGACGTGTATGCTTTTGGGGTGGTGATGCTGGAGCTGATGTCAGGGGAGGAGGCGTTGAAGTATAAGATGGAGGCGGAGGAAGGCAGGTATAAGAGAGTGAGTGTGATAGAGACGGCAAGGGAGGCAGTGAAATGTGGTGGAGGAGTGAGGAGGTGGGTGGATAGGAGGCTGAACGACTCGTTTCCGATGGAGGTGGCGGAGAAGATGGTGCAGGTGGCGCTGGAGTGTGTGGAGGATGACCCGGAAAGGAGGCCGGACATGGGTCGGGTTGCGGGTTTGGTTTCTAAGTTGTTTTTGGAGTCGCAGAAATGGGCGGATAGAATAGGGTTGCCTCTCGACATCTCTGTTTCTTTGGCTCCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

400

Amino Acids

43.66

Weight (kDa)

9.16

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	125 - 368	5.8e-26	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	132 - 365	1.9e-27	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57120
fragaria_vesca	FvH4_3g31560 FvH4_7g19030
malus_domestica	MD01G1105700.v1.1 MD03G1123700.v1.1 MD07G1172200.v1.1 MD12G1106300.v1.1
prunus_persica	Prupe.2G211100_v2.0.a1 Prupe.6G106100_v2.0.a1
pyrus_communis	pycom01g13250 pycom07g16650 pycom17g07150
rosa_chinensis	RchiOBHm_Chr1g0362941 RchiOBHm_Chr5g0058201
rosa_laevigata	RLG00000027610 RLG00000035203
rosa_multiflora	Rmu_sc0000367.1_g000042 Rmu_sc0019019.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022330 Rroxscaffold_4G00293630
rosa_rugosa	Rorug01G0302200 Rorug05G0312700
rosa_samantha	Rh1AG311800 Rh1BG274900 Rh1CG292100 Rh1DG305600 Rh5BG391900 Rh5CG415800 Rh5DG406400
rosa_wichuraiana	Rw1G027630 Rw5G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1036
AasI	GACNNNNNNGTC	2 cut(s)	70, 350
Acc36I	ACCTGC	2 cut(s)	909, 1036
AccB1I	GGYRCC	3 cut(s)	125, 506, 793
AccB7I	CCANNNNNTGG	1 cut(s)	318
AccI	GTMKAC	2 cut(s)	480, 489
AccII	CGCG	2 cut(s)	336, 707
AcuI	CTGAAG	1 cut(s)	566
AcyI	GRCGYC	3 cut(s)	345, 507, 794
AfiI	CCNNNNNNNGG	3 cut(s)	110, 318, 1094
AflIII	ACRYGT	1 cut(s)	837
AgsI	TTSAA	1 cut(s)	892
AjiI	CACGTC	2 cut(s)	459, 838
AjnI	CCWGG	2 cut(s)	566, 755
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	9 cut(s)	153, 448, 474, 549, 602, 672, 736, 808, 868
AluI	AGCT	9 cut(s)	153, 448, 474, 549, 602, 672, 736, 808, 868
Alw21I	GWGCWC	2 cut(s)	23, 674
Alw26I	GTCTC	2 cut(s)	465, 938
AoxI	GGCC	3 cut(s)	607, 634, 1085
ApeKI	GCWGC	3 cut(s)	324, 471, 627
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AspLEI	GCGC	5 cut(s)	324, 363, 509, 796, 1054
AspS9I	GGNCC	2 cut(s)	63, 556
AsuC2I	CCSGG	3 cut(s)	43, 61, 1076
AsuHPI	GGTGA	2 cut(s)	832, 868
AvaII	GGWCC	2 cut(s)	63, 556
BanI	GGYRCC	3 cut(s)	125, 506, 793
BanII	GRGCYC	2 cut(s)	50, 674
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	2 cut(s)	23, 674
BbvI	GCAGC	3 cut(s)	311, 483, 614
BccI	CCATC	4 cut(s)	46, 895, 1015, 1033
BceAI	ACGGC	6 cut(s)	175, 332, 520, 622, 744, 963
BcgI	CGANNNNNNTGC	4 cut(s)	361, 395, 824, 858
BciT130I	CCWGG	2 cut(s)	568, 757
BcnI	CCSGG	3 cut(s)	43, 61, 1076
BcoDI	GTCTC	2 cut(s)	465, 938
BfaI	CTAG	1 cut(s)	599
BfoI	RGCGCY	4 cut(s)	325, 510, 797, 1055
BfuAI	ACCTGC	2 cut(s)	909, 1036
BglI	GCCNNNNNGGC	1 cut(s)	723
BglII	AGATCT	2 cut(s)	255, 711
BisI	GCNGC	5 cut(s)	136, 325, 337, 472, 628
BlpI	GCTNAGC	1 cut(s)	809
BlsI	GCNGC	5 cut(s)	137, 326, 338, 473, 629
Bme1390I	CCNGG	5 cut(s)	43, 61, 568, 757, 1076
Bme18I	GGWCC	2 cut(s)	63, 556
BmgBI	CACGTC	2 cut(s)	459, 838
BmgT120I	GGNCC	2 cut(s)	63, 556
BmiI	GGNNCC	6 cut(s)	47, 127, 508, 643, 795, 1191
BmrFI	CCNGG	5 cut(s)	43, 61, 568, 757, 1076
BmsI	GCATC	3 cut(s)	447, 687, 849
BoxI	GACNNNNGTC	1 cut(s)	1095
BpiI	GAAGAC	1 cut(s)	346
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	4 cut(s)	380, 418, 884, 1076
Bpu10I	CCTNAGC	1 cut(s)	281
Bpu1102I	GCTNAGC	1 cut(s)	809
BpuEI	CTTGAG	3 cut(s)	185, 194, 658
BpuMI	CCSGG	3 cut(s)	43, 61, 1076
BsaBI	GATNNNNATC	1 cut(s)	383
BsaHI	GRCGYC	3 cut(s)	345, 507, 794
BsaJI	CCNNGG	4 cut(s)	59, 334, 451, 637
BsaWI	WCCGGW	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 318, 1094
Bse118I	RCCGGY	1 cut(s)	131
Bse8I	GATNNNNATC	1 cut(s)	383
BseBI	CCWGG	2 cut(s)	568, 757
BseDI	CCNNGG	4 cut(s)	59, 334, 451, 637
BseGI	GGATG	4 cut(s)	38, 384, 618, 1075
BseJI	GATNNNNATC	1 cut(s)	383
BseLI	CCNNNNNNNGG	3 cut(s)	110, 318, 1094
BseMII	CTCAG	1 cut(s)	823
BseXI	GCAGC	3 cut(s)	311, 483, 614
BsgI	GTGCAG	2 cut(s)	310, 1064
Bsh1236I	CGCG	2 cut(s)	336, 707
Bsh1285I	CGRYCG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	609, 636, 1087
BshNI	GGYRCC	3 cut(s)	125, 506, 793
BsiEI	CGRYCG	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	23, 674
BslFI	GGGAC	2 cut(s)	190, 352
BslI	CCNNNNNNNGG	3 cut(s)	110, 318, 1094
BsmAI	GTCTC	2 cut(s)	465, 938
BsmBI	CGTCTC	2 cut(s)	465, 938
BsmFI	GGGAC	2 cut(s)	190, 352
BsnI	GGCC	3 cut(s)	609, 636, 1087
Bsp1286I	GDGCHC	3 cut(s)	23, 50, 674
Bsp143I	GATC	5 cut(s)	237, 255, 378, 585, 711
Bsp1720I	GCTNAGC	1 cut(s)	809
BspANI	GGCC	3 cut(s)	609, 636, 1087
BspCNI	CTCAG	1 cut(s)	822
BspFNI	CGCG	2 cut(s)	336, 707
BspLI	GGNNCC	6 cut(s)	47, 127, 508, 643, 795, 1191
BspMI	ACCTGC	2 cut(s)	909, 1036
BspT107I	GGYRCC	3 cut(s)	125, 506, 793
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	4 cut(s)	59, 334, 451, 637
BssMI	GATC	5 cut(s)	237, 255, 378, 585, 711
BssNI	GRCGYC	3 cut(s)	345, 507, 794
Bst2UI	CCWGG	2 cut(s)	568, 757
Bst4CI	ACNGT	1 cut(s)	556
BstACI	GRCGYC	3 cut(s)	345, 507, 794
BstC8I	GCNNGC	4 cut(s)	23, 27, 56, 151
BstDEI	CTNAG	3 cut(s)	281, 809, 1119
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	4 cut(s)	38, 384, 618, 1075
BstFNI	CGCG	2 cut(s)	336, 707
BstH2I	RGCGCY	4 cut(s)	325, 510, 797, 1055
BstHHI	GCGC	5 cut(s)	324, 363, 509, 796, 1054
BstKTI	GATC	5 cut(s)	240, 258, 381, 588, 714
BstMAI	GTCTC	2 cut(s)	465, 938
BstMBI	GATC	5 cut(s)	237, 255, 378, 585, 711
BstMCI	CGRYCG	1 cut(s)	381
BstMWI	GCNNNNNNNGC	9 cut(s)	132, 159, 333, 369, 515, 633, 723, 956, 1051
BstNI	CCWGG	2 cut(s)	568, 757
BstPAI	GACNNNNGTC	1 cut(s)	1095
BstSCI	CCNGG	5 cut(s)	41, 59, 566, 755, 1074
BstUI	CGCG	2 cut(s)	336, 707
BstV1I	GCAGC	3 cut(s)	311, 483, 614
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	2 cut(s)	255, 711
BstYI	RGATCY	2 cut(s)	255, 711
BsuRI	GGCC	3 cut(s)	609, 636, 1087
BtgI	CCRYGG	1 cut(s)	334
BtrI	CACGTC	2 cut(s)	459, 838
BtsCI	GGATG	4 cut(s)	38, 384, 618, 1075
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	2 cut(s)	698, 966
BveI	ACCTGC	2 cut(s)	909, 1036
Cac8I	GCNNGC	4 cut(s)	23, 27, 56, 151
CfoI	GCGC	5 cut(s)	324, 363, 509, 796, 1054
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	63, 556
Cfr42I	CCGCGG	1 cut(s)	337
CseI	GACGC	2 cut(s)	353, 832
CviAII	CATG	2 cut(s)	235, 1093
DdeI	CTNAG	3 cut(s)	281, 809, 1119
DinI	GGCGCC	2 cut(s)	508, 795
DpnI	GATC	5 cut(s)	239, 257, 380, 587, 713
DpnII	GATC	5 cut(s)	237, 255, 378, 585, 711
DrdI	GACNNNNNNGTC	2 cut(s)	70, 350
DseDI	GACNNNNNNGTC	2 cut(s)	70, 350
EciI	GGCGGA	5 cut(s)	136, 746, 923, 1046, 1163
Ecl136II	GAGCTC	1 cut(s)	672
Eco24I	GRGCYC	2 cut(s)	50, 674
Eco47I	GGWCC	2 cut(s)	63, 556
Eco53kI	GAGCTC	1 cut(s)	672
Eco57I	CTGAAG	1 cut(s)	566
EcoICRI	GAGCTC	1 cut(s)	672
EcoRII	CCWGG	2 cut(s)	566, 755
EcoT38I	GRGCYC	2 cut(s)	50, 674
EgeI	GGCGCC	2 cut(s)	508, 795
EheI	GGCGCC	2 cut(s)	508, 795
Esp3I	CGTCTC	2 cut(s)	465, 938
FaeI	CATG	2 cut(s)	238, 1096
FaiI	YATR	7 cut(s)	236, 789, 791, 843, 897, 924, 1094
FaqI	GGGAC	2 cut(s)	190, 352
FatI	CATG	2 cut(s)	234, 1092
FauI	CCCGC	4 cut(s)	59, 377, 584, 1099
FblI	GTMKAC	2 cut(s)	480, 489
Fnu4HI	GCNGC	5 cut(s)	136, 325, 337, 472, 628
FokI	GGATG	4 cut(s)	25, 371, 605, 1082
FriOI	GRGCYC	2 cut(s)	50, 674
Fsp4HI	GCNGC	5 cut(s)	136, 325, 337, 472, 628
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	5 cut(s)	323, 362, 508, 795, 1053
GluI	GCNGC	5 cut(s)	136, 325, 337, 472, 628
GsuI	CTGGAG	4 cut(s)	380, 418, 884, 1076
HaeII	RGCGCY	4 cut(s)	325, 510, 797, 1055
HaeIII	GGCC	3 cut(s)	609, 636, 1087
HgaI	GACGC	2 cut(s)	353, 832
HhaI	GCGC	5 cut(s)	324, 363, 509, 796, 1054
Hin1I	GRCGYC	3 cut(s)	345, 507, 794
Hin1II	CATG	2 cut(s)	238, 1096
Hin6I	GCGC	5 cut(s)	322, 361, 507, 794, 1052
HinP1I	GCGC	5 cut(s)	322, 361, 507, 794, 1052
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	547
HinfI	GANTC	2 cut(s)	1010, 1133
HphI	GGTGA	2 cut(s)	832, 868
Hpy166II	GTNNAC	4 cut(s)	481, 490, 502, 655
Hpy188I	TCNGA	3 cut(s)	253, 585, 1020
Hpy188III	TCNNGA	2 cut(s)	667, 1169
Hpy8I	GTNNAC	4 cut(s)	481, 490, 502, 655
Hpy99I	CGWCG	3 cut(s)	161, 353, 839
HpyAV	CCTTC	5 cut(s)	85, 590, 760, 767, 908
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	3 cut(s)	458, 477, 837
HpyCH4V	TGCA	3 cut(s)	6, 327, 1045
HpyF10VI	GCNNNNNNNGC	9 cut(s)	132, 159, 333, 369, 515, 633, 723, 956, 1051
HpyF3I	CTNAG	3 cut(s)	281, 809, 1119
HpySE526I	ACGT	3 cut(s)	458, 477, 837
Hsp92I	GRCGYC	3 cut(s)	345, 507, 794
Hsp92II	CATG	2 cut(s)	238, 1096
HspAI	GCGC	5 cut(s)	322, 361, 507, 794, 1052
KasI	GGCGCC	2 cut(s)	506, 793
KspI	CCGCGG	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	237, 255, 378, 585, 711
LmnI	GCTCC	7 cut(s)	45, 453, 635, 647, 733, 865, 1195
Lsp1109I	GCAGC	3 cut(s)	311, 483, 614
LweI	GCATC	3 cut(s)	447, 687, 849
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	3 cut(s)	458, 477, 837
MaeIII	GTNAC	2 cut(s)	685, 820
MalI	GATC	5 cut(s)	239, 257, 380, 587, 713
MboI	GATC	5 cut(s)	237, 255, 378, 585, 711
MboII	GAAGA	4 cut(s)	346, 721, 775, 1048
MflI	RGATCY	2 cut(s)	255, 711
MhlI	GDGCHC	3 cut(s)	23, 50, 674
Mly113I	GGCGCC	2 cut(s)	507, 794
MlyI	GAGTC	2 cut(s)	1004, 1142
MmeI	TCCRAC	1 cut(s)	114
MspA1I	CMGCKG	3 cut(s)	336, 627, 813
MspR9I	CCNGG	5 cut(s)	43, 61, 568, 757, 1076
MvaI	CCWGG	2 cut(s)	568, 757
MvnI	CGCG	2 cut(s)	336, 707
MwoI	GCNNNNNNNGC	9 cut(s)	132, 159, 333, 369, 515, 633, 723, 956, 1051
NarI	GGCGCC	2 cut(s)	507, 794
NciI	CCSGG	3 cut(s)	43, 61, 1076
NdeII	GATC	5 cut(s)	237, 255, 378, 585, 711
NlaIII	CATG	2 cut(s)	238, 1096
NlaIV	GGNNCC	6 cut(s)	47, 127, 508, 643, 795, 1191
NmeAIII	GCCGAG	2 cut(s)	432, 618
NmuCI	GTSAC	2 cut(s)	685, 820
PaqCI	CACCTGC	1 cut(s)	1036
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 483
PflFI	GACNNNGTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	318
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	5 cut(s)	137, 326, 338, 473, 629
Ple19I	CGATCG	1 cut(s)	381
PleI	GAGTC	2 cut(s)	1004, 1141
PluTI	GGCGCC	2 cut(s)	510, 797
PpsI	GAGTC	2 cut(s)	1004, 1141
PshAI	GACNNNNGTC	1 cut(s)	1095
Psp124BI	GAGCTC	1 cut(s)	674
Psp6I	CCWGG	2 cut(s)	566, 755
PspGI	CCWGG	2 cut(s)	566, 755
PspN4I	GGNNCC	6 cut(s)	47, 127, 508, 643, 795, 1191
PspPI	GGNCC	2 cut(s)	63, 556
PsuI	RGATCY	2 cut(s)	255, 711
PsyI	GACNNNGTC	1 cut(s)	347
PvuI	CGATCG	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	674
SacII	CCGCGG	1 cut(s)	337
SatI	GCNGC	5 cut(s)	136, 325, 337, 472, 628
Sau3AI	GATC	5 cut(s)	237, 255, 378, 585, 711
Sau96I	GGNCC	2 cut(s)	63, 556
SchI	GAGTC	2 cut(s)	1004, 1142
ScrFI	CCNGG	5 cut(s)	43, 61, 568, 757, 1076
SduI	GDGCHC	3 cut(s)	23, 50, 674
SfaNI	GCATC	3 cut(s)	447, 687, 849
SfoI	GGCGCC	2 cut(s)	508, 795
Sfr303I	CCGCGG	1 cut(s)	337
SgrAI	CRCCGGYG	1 cut(s)	131
SgrBI	CCGCGG	1 cut(s)	337
SinI	GGWCC	2 cut(s)	63, 556
SmlI	CTYRAG	3 cut(s)	200, 209, 673
SmoI	CTYRAG	3 cut(s)	200, 209, 673
SspDI	GGCGCC	2 cut(s)	506, 793
SspMI	CTAG	1 cut(s)	599
SstI	GAGCTC	1 cut(s)	674
StyD4I	CCNGG	5 cut(s)	41, 59, 566, 755, 1074
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	3 cut(s)	461, 480, 840
TaqI	TCGA	5 cut(s)	381, 612, 692, 761, 1170
TauI	GCSGC	2 cut(s)	138, 339
TscAI	CASTG	2 cut(s)	705, 966
TseFI	GTSAC	2 cut(s)	685, 820
TseI	GCWGC	3 cut(s)	324, 471, 627
Tsp45I	GTSAC	2 cut(s)	685, 820
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	2 cut(s)	705, 966
Tth111I	GACNNNGTC	1 cut(s)	347
Van91I	CCANNNNNTGG	1 cut(s)	318
VpaK11BI	GGWCC	2 cut(s)	63, 556
XmiI	GTMKAC	2 cut(s)	480, 489
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.