Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004825

Physical Location & Seq

Genomic Coordinates Reverse (-)

64238077 .. 64238802

Gene Structure 726 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG406400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCAGGTCGCCGCCGACCTCGCTCAGGGCCTCGATTATGTTCACAACAAGACAGGGCTCAGTGTCACCATAGTCCACAACCGCATCAAGAGCAGCAGCGTTTTGGTGACGGAGCCTAATTGCAATGCCAGGATATGCCATTTCGGGACAGCCCAGTTGTGCGGCGAGACCGATTTCCATACCCAGATGGATTCCAAGCCCAAATCCACAGTTTCGGGTGAGATCATTGAGGTCAGCGAAGAAATGGGTCCGAGCCCGAAGTCGAAACTGGGACGATCCTACAGCGGAAAAGCCCAATTCGAAGGAGAGAGAGGGTACATGTCGCCGGAGTTTCAGACCACCGGCGTCGCCACCCAAAAGTCCGACGTGTACGCATTCGGGGTCGTAATTCTGGAGCTGTTGTCGAGTCAGGAGCCGTTCAAGTACAAGTTCGATAAAACCCGCGGTGATTTTATCAGAACCTCCGTCGTCGAATCCGCTCAAGCCGCCGTCGACAGTGGCGGTTTGAGGACGTGGGTGGATAGCAGGCTGAAGGACTCGTTTCCCGTCGATGTGGCCGAGAAGTTGACACGTCTGGCGCTGGAGTGCGTACACGTGGACCCAGATAAACGACCCAGCATGGGACGCGTGGCGGGGAAGATCTCCAAGTTTTACTTGGATTCCCGGACTTGGGCGGAGAATTTGAGAATGCCCACCGGAATTTCGATCTCTCTGGGTCCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

241

Amino Acids

26.47

Weight (kDa)

7.68

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 209	3.3e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	104 - 211	2.4e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57120
fragaria_vesca	FvH4_3g31560 FvH4_7g19030
malus_domestica	MD01G1105700.v1.1 MD03G1123700.v1.1 MD07G1172200.v1.1 MD12G1106300.v1.1
prunus_persica	Prupe.2G211100_v2.0.a1 Prupe.6G106100_v2.0.a1
pyrus_communis	pycom01g13250 pycom07g16650 pycom17g07150
rosa_chinensis	RchiOBHm_Chr1g0362941 RchiOBHm_Chr5g0058201
rosa_laevigata	RLG00000027610 RLG00000035203
rosa_multiflora	Rmu_sc0000367.1_g000042 Rmu_sc0019019.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022330 Rroxscaffold_4G00293630
rosa_rugosa	Rorug01G0302200 Rorug05G0312700
rosa_samantha	Rh1AG311800 Rh1BG274900 Rh1CG292100 Rh1DG305600 Rh5BG391900 Rh5CG415800 Rh5DG406400
rosa_wichuraiana	Rw1G027630 Rw5G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	492
AccII	CGCG	2 cut(s)	444, 627
AclWI	GGATC	1 cut(s)	270
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	2 cut(s)	679, 699
AcuI	CTGAAG	1 cut(s)	551
AcvI	CACGTG	1 cut(s)	595
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	4 cut(s)	317, 371, 425, 591
AfiI	CCNNNNNNNGG	4 cut(s)	25, 620, 669, 670
AflIII	ACRYGT	5 cut(s)	318, 366, 569, 592, 625
AgsI	TTSAA	1 cut(s)	421
AjiI	CACGTC	3 cut(s)	367, 513, 572
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	270
AoxI	GGCC	2 cut(s)	28, 555
ApeKI	GCWGC	2 cut(s)	93, 96
ApoI	RAATTY	2 cut(s)	679, 699
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	4 cut(s)	28, 248, 598, 716
AsuC2I	CCSGG	1 cut(s)	664
AsuHPI	GGTGA	4 cut(s)	58, 118, 230, 458
AsuII	TTCGAA	1 cut(s)	300
AvaII	GGWCC	3 cut(s)	248, 598, 716
BanII	GRGCYC	2 cut(s)	60, 257
BbrPI	CACGTG	1 cut(s)	595
BbvI	GCAGC	2 cut(s)	105, 108
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	2 cut(s)	400, 473
BciT130I	CCWGG	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	664
BcoDI	GTCTC	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	581
BglII	AGATCT	1 cut(s)	639
BisI	GCNGC	5 cut(s)	12, 94, 97, 163, 486
BlsI	GCNGC	5 cut(s)	13, 95, 98, 164, 487
Bme1390I	CCNGG	2 cut(s)	130, 664
Bme18I	GGWCC	3 cut(s)	248, 598, 716
BmgBI	CACGTC	3 cut(s)	367, 513, 572
BmgT120I	GGNCC	4 cut(s)	28, 248, 598, 716
BmiI	GGNNCC	5 cut(s)	114, 249, 414, 600, 717
BmrFI	CCNGG	2 cut(s)	130, 664
BmrI	ACTGGG	2 cut(s)	148, 278
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	2 cut(s)	148, 278
BpmI	CTGGAG	2 cut(s)	413, 602
Bpu10I	CCTNAGC	1 cut(s)	24
Bpu14I	TTCGAA	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	664
BsaAI	YACGTR	1 cut(s)	595
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	442
BsaWI	WCCGGW	1 cut(s)	695
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 620, 669, 670
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	2 cut(s)	154, 273
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	442
BseLI	CCNNNNNNNGG	4 cut(s)	25, 620, 669, 670
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	38, 73
BseNI	ACTGG	2 cut(s)	154, 273
BseXI	GCAGC	2 cut(s)	105, 108
BseYI	CCCAGC	1 cut(s)	614
Bsh1236I	CGCG	2 cut(s)	444, 627
BshFI	GGCC	2 cut(s)	30, 557
BsiSI	CCGG	4 cut(s)	326, 342, 664, 696
BslFI	GGGAC	3 cut(s)	160, 285, 636
BslI	CCNNNNNNNGG	4 cut(s)	25, 620, 669, 670
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	3 cut(s)	160, 285, 636
BsmI	GAATGC	2 cut(s)	374, 693
BsnI	GGCC	2 cut(s)	30, 557
Bso31I	GGTCTC	1 cut(s)	161
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	60, 257
Bsp143I	GATC	4 cut(s)	222, 275, 639, 705
BspANI	GGCC	2 cut(s)	30, 557
BspCNI	CTCAG	2 cut(s)	37, 72
BspFNI	CGCG	2 cut(s)	444, 627
BspLI	GGNNCC	5 cut(s)	114, 249, 414, 600, 717
BspPI	GGATC	1 cut(s)	270
BspT104I	TTCGAA	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	161
BsrBI	CCGCTC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	154, 273
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	4 cut(s)	222, 275, 639, 705
BssNI	GRCGYC	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	211, 497
BstACI	GRCGYC	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	595
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	2 cut(s)	24, 59
BstDSI	CCRYGG	1 cut(s)	442
BstENI	CCTNNNNNAGG	1 cut(s)	23
BstFNI	CGCG	2 cut(s)	444, 627
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	4 cut(s)	225, 278, 642, 708
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	4 cut(s)	222, 275, 639, 705
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 90, 485, 624
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	128, 662
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	2 cut(s)	444, 627
BstV1I	GCAGC	2 cut(s)	105, 108
BstX2I	RGATCY	1 cut(s)	639
BstYI	RGATCY	1 cut(s)	639
BsuRI	GGCC	2 cut(s)	30, 557
BtgI	CCRYGG	1 cut(s)	442
BtrI	CACGTC	3 cut(s)	367, 513, 572
BtsIMutI	CAGTG	2 cut(s)	67, 502
Cac8I	GCNNGC	1 cut(s)	527
CfoI	GCGC	1 cut(s)	580
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	4 cut(s)	28, 248, 598, 716
Cfr42I	CCGCGG	1 cut(s)	445
CseI	GACGC	2 cut(s)	334, 633
Csp6I	GTAC	4 cut(s)	316, 370, 424, 590
CviAII	CATG	2 cut(s)	319, 619
CviQI	GTAC	4 cut(s)	316, 370, 424, 590
DdeI	CTNAG	2 cut(s)	24, 59
DpnI	GATC	4 cut(s)	224, 277, 641, 707
DpnII	GATC	4 cut(s)	222, 275, 639, 705
EaeI	YGGCCR	1 cut(s)	555
EciI	GGCGGA	1 cut(s)	689
Eco24I	GRGCYC	2 cut(s)	60, 257
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	3 cut(s)	248, 598, 716
Eco57I	CTGAAG	1 cut(s)	551
Eco72I	CACGTG	1 cut(s)	595
EcoNI	CCTNNNNNAGG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	128
EcoT38I	GRGCYC	2 cut(s)	60, 257
FaeI	CATG	2 cut(s)	322, 622
FaiI	YATR	6 cut(s)	39, 71, 136, 180, 320, 620
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	3 cut(s)	160, 285, 636
FatI	CATG	2 cut(s)	318, 618
FauI	CCCGC	2 cut(s)	449, 625
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	5 cut(s)	12, 94, 97, 163, 486
FriOI	GRGCYC	2 cut(s)	60, 257
Fsp4HI	GCNGC	5 cut(s)	12, 94, 97, 163, 486
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	5 cut(s)	12, 94, 97, 163, 486
GsaI	CCCAGC	1 cut(s)	618
GsuI	CTGGAG	2 cut(s)	413, 602
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	2 cut(s)	30, 557
HapII	CCGG	4 cut(s)	326, 342, 664, 696
HgaI	GACGC	2 cut(s)	334, 633
HhaI	GCGC	1 cut(s)	580
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	2 cut(s)	322, 622
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	2 cut(s)	493, 567
HindII	GTYRAC	2 cut(s)	493, 567
HinfI	GANTC	5 cut(s)	191, 406, 473, 536, 659
HpaII	CCGG	4 cut(s)	326, 342, 664, 696
HphI	GGTGA	4 cut(s)	58, 118, 230, 458
Hpy166II	GTNNAC	7 cut(s)	43, 76, 370, 493, 567, 592, 598
Hpy188I	TCNGA	5 cut(s)	252, 336, 364, 458, 720
Hpy188III	TCNNGA	4 cut(s)	88, 145, 392, 410
Hpy8I	GTNNAC	7 cut(s)	43, 76, 370, 493, 567, 592, 598
Hpy99I	CGWCG	6 cut(s)	350, 368, 470, 473, 494, 551
HpyAV	CCTTC	2 cut(s)	296, 526
HpyCH4III	ACNGT	2 cut(s)	211, 497
HpyCH4IV	ACGT	4 cut(s)	366, 512, 571, 594
HpyCH4V	TGCA	2 cut(s)	4, 123
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 90, 485, 624
HpyF3I	CTNAG	2 cut(s)	24, 59
HpySE526I	ACGT	4 cut(s)	366, 512, 571, 594
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	322, 622
HspAI	GCGC	1 cut(s)	578
KspI	CCGCGG	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	222, 275, 639, 705
LmnI	GCTCC	3 cut(s)	112, 394, 412
Lsp1109I	GCAGC	2 cut(s)	105, 108
LweI	GCATC	1 cut(s)	93
MaeII	ACGT	4 cut(s)	366, 512, 571, 594
MaeIII	GTNAC	2 cut(s)	64, 106
MalI	GATC	4 cut(s)	224, 277, 641, 707
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	4 cut(s)	222, 275, 639, 705
MboII	GAAGA	2 cut(s)	251, 649
MflI	RGATCY	1 cut(s)	639
MhlI	GDGCHC	2 cut(s)	60, 257
MluCI	AATT	5 cut(s)	118, 296, 387, 679, 699
MluI	ACGCGT	1 cut(s)	625
MlyI	GAGTC	2 cut(s)	415, 530
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	6 cut(s)	29, 41, 223, 305, 472, 501
MspA1I	CMGCKG	2 cut(s)	285, 444
MspI	CCGG	4 cut(s)	326, 342, 664, 696
MspR9I	CCNGG	2 cut(s)	130, 664
Mva1269I	GAATGC	2 cut(s)	374, 693
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	2 cut(s)	444, 627
MwoI	GCNNNNNNNGC	4 cut(s)	20, 90, 485, 624
NciI	CCSGG	1 cut(s)	664
NdeII	GATC	4 cut(s)	222, 275, 639, 705
NlaIII	CATG	2 cut(s)	322, 622
NlaIV	GGNNCC	5 cut(s)	114, 249, 414, 600, 717
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	2 cut(s)	64, 106
NspI	RCATGY	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	300
PciI	ACATGT	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	555
PctI	GAATGC	2 cut(s)	374, 693
PfeI	GAWTC	3 cut(s)	191, 473, 659
PfoI	TCCNGGA	1 cut(s)	662
PkrI	GCNGC	5 cut(s)	13, 95, 98, 164, 487
PleI	GAGTC	2 cut(s)	414, 530
PmaCI	CACGTG	1 cut(s)	595
PmlI	CACGTG	1 cut(s)	595
PpsI	GAGTC	2 cut(s)	414, 530
Ppu21I	YACGTR	1 cut(s)	595
PscI	ACATGT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	128
PspCI	CACGTG	1 cut(s)	595
PspFI	CCCAGC	1 cut(s)	614
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	5 cut(s)	114, 249, 414, 600, 717
PspPI	GGNCC	4 cut(s)	28, 248, 598, 716
PsuI	RGATCY	1 cut(s)	639
RsaI	GTAC	4 cut(s)	317, 371, 425, 591
RsaNI	GTAC	4 cut(s)	316, 370, 424, 590
SacII	CCGCGG	1 cut(s)	445
SalI	GTCGAC	1 cut(s)	491
SatI	GCNGC	5 cut(s)	12, 94, 97, 163, 486
Sau3AI	GATC	4 cut(s)	222, 275, 639, 705
Sau96I	GGNCC	4 cut(s)	28, 248, 598, 716
SchI	GAGTC	2 cut(s)	415, 530
ScrFI	CCNGG	2 cut(s)	130, 664
SduI	GDGCHC	2 cut(s)	60, 257
SetI	ASST	9 cut(s)	9, 21, 234, 369, 399, 464, 515, 574, 597
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	280
Sfr303I	CCGCGG	1 cut(s)	445
SfuI	TTCGAA	1 cut(s)	300
SgrAI	CRCCGGYG	1 cut(s)	341
SgrBI	CCGCGG	1 cut(s)	445
SinI	GGWCC	3 cut(s)	248, 598, 716
SmlI	CTYRAG	1 cut(s)	480
SmoI	CTYRAG	1 cut(s)	480
Sse9I	AATT	5 cut(s)	118, 296, 387, 679, 699
StyD4I	CCNGG	2 cut(s)	128, 662
TaaI	ACNGT	2 cut(s)	211, 497
TaiI	ACGT	4 cut(s)	369, 515, 574, 597
TaqI	TCGA	9 cut(s)	33, 263, 300, 404, 432, 471, 492, 549, 704
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	5 cut(s)	118, 296, 387, 679, 699
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	3 cut(s)	14, 165, 488
TfiI	GAWTC	3 cut(s)	191, 473, 659
TscAI	CASTG	2 cut(s)	67, 502
TseFI	GTSAC	2 cut(s)	64, 106
TseI	GCWGC	2 cut(s)	93, 96
Tsp45I	GTSAC	2 cut(s)	64, 106
TspGWI	ACGGA	2 cut(s)	125, 454
TspRI	CASTG	2 cut(s)	67, 502
VpaK11BI	GGWCC	3 cut(s)	248, 598, 716
XagI	CCTNNNNNAGG	1 cut(s)	23
XapI	RAATTY	2 cut(s)	679, 699
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XmiI	GTMKAC	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.