Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019019.1

Orthogroup ID

OG0004825

Physical Location & Seq

Genomic Coordinates Reverse (-)

475 .. 1650

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019019.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atgtgcaagaccaaaaagagcacgcaggcgattgagccccggagccccctcaagccccgaccctccaagtccttctcctccgaccccttatccggcaactgcagcaacaccggcggcaacaactccagctacggcaacttctccaaatcctccacctcctcctccgtcgcctccctcaagtccctcaagtcctccctccccgaaaaccccgtgatctatgattcctcggagatctcctcctccaccaacaacttcctcaaccaccgcctctcctcctccaccacctcctcctcctggcgctgcaccctccgcggcaaagacgccgtcgttttccaacgcaagtcccgcaccccgatcgacctcccggacctccagcagagcctctccctcatctcccgcagccaccacagcagcctcatcaagctcctcggcgcgtcgctgtccggcagctacgtctacctcgtctacgagttcgtcgccggcgccaacctcgccgactgcctccgcaaccctaacaacccgagctacacagtcctctccacctggctctcgcggctgcagatcgccaccgacctagctcacggcctggactacatccaccgctgctcaggcctcggctccggcttggtccacaaccacatcaagagctcgagtatcattattacagaagcgaccctgaacgccaagatctgccactttggcacggccgagctctgcggagagagccgggcgaggtcgaagaaggtagaaggaacaagaggctacatggcgccggagtttcaagtgagcggggtcgtcacccaaaaatgcgatgtgtatgcttttggggttgtgatgctggagctggtctccggggaggagccgttgaagtataagatggaggtggaagacggcgggtataagagagtgagtgttatagagacggccagagaagcggtgataagtgttggtggagtgaggaggtgggtggataggaggttgaaggactcgtttccgatggaggtggcggagaagatggtgcaggtggcgctggagtgtgtggacgatgacccggaaaggaggccggatatgggtcgggttgcgggtttggtttccaagttgtttttggagtcgcagaaatgggcggagaatattggcttgcccactgacatctctgtttcattggctgcgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

391

Amino Acids

42.66

Weight (kDa)

8.95

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57120
fragaria_vesca	FvH4_3g31560 FvH4_7g19030
malus_domestica	MD01G1105700.v1.1 MD03G1123700.v1.1 MD07G1172200.v1.1 MD12G1106300.v1.1
prunus_persica	Prupe.2G211100_v2.0.a1 Prupe.6G106100_v2.0.a1
pyrus_communis	pycom01g13250 pycom07g16650 pycom17g07150
rosa_chinensis	RchiOBHm_Chr1g0362941 RchiOBHm_Chr5g0058201
rosa_laevigata	RLG00000027610 RLG00000035203
rosa_multiflora	Rmu_sc0000367.1_g000042 Rmu_sc0019019.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022330 Rroxscaffold_4G00293630
rosa_rugosa	Rorug01G0302200 Rorug05G0312700
rosa_samantha	Rh1AG311800 Rh1BG274900 Rh1CG292100 Rh1DG305600 Rh5BG391900 Rh5CG415800 Rh5DG406400
rosa_wichuraiana	Rw1G027630 Rw5G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1012
Acc36I	ACCTGC	1 cut(s)	1012
AccB1I	GGYRCC	2 cut(s)	482, 769
AccBSI	CCGCTC	1 cut(s)	789
AccI	GTMKAC	2 cut(s)	456, 465
AccII	CGCG	3 cut(s)	312, 434, 553
AcoI	YGGCCR	2 cut(s)	705, 924
AcyI	GRCGYC	3 cut(s)	321, 483, 770
AfiI	CCNNNNNNNGG	3 cut(s)	92, 294, 1070
AgsI	TTSAA	3 cut(s)	782, 868, 982
AjnI	CCWGG	3 cut(s)	293, 542, 585
AluBI	AGCT	8 cut(s)	129, 424, 450, 525, 578, 648, 712, 844
AluI	AGCT	8 cut(s)	129, 424, 450, 525, 578, 648, 712, 844
Alw21I	GWGCWC	3 cut(s)	23, 650, 714
Alw26I	GTCTC	2 cut(s)	853, 914
Ama87I	CYCGRG	2 cut(s)	520, 649
AoxI	GGCC	5 cut(s)	583, 610, 705, 924, 1061
ApeKI	GCWGC	8 cut(s)	102, 300, 399, 411, 447, 556, 603, 1166
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
AspLEI	GCGC	5 cut(s)	300, 434, 485, 772, 1030
AspS9I	GGNCC	2 cut(s)	367, 628
AsuC2I	CCSGG	5 cut(s)	40, 365, 728, 853, 1052
AsuHPI	GGTGA	2 cut(s)	790, 949
AvaI	CYCGRG	2 cut(s)	520, 649
AvaII	GGWCC	2 cut(s)	367, 628
BanI	GGYRCC	2 cut(s)	482, 769
BanII	GRGCYC	4 cut(s)	39, 47, 650, 714
BbsI	GAAGAC	1 cut(s)	894
Bbv12I	GWGCWC	3 cut(s)	23, 650, 714
BbvI	GCAGC	8 cut(s)	114, 287, 411, 423, 459, 543, 590, 1153
BccI	CCATC	3 cut(s)	871, 991, 1009
BceAI	ACGGC	7 cut(s)	148, 308, 598, 720, 847, 907, 939
BcgI	CGANNNNNNTGC	4 cut(s)	337, 371, 800, 834
BciT130I	CCWGG	3 cut(s)	295, 544, 587
BcnI	CCSGG	5 cut(s)	40, 365, 728, 853, 1052
BcoDI	GTCTC	2 cut(s)	853, 914
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	2 cut(s)	100, 557
BfoI	RGCGCY	4 cut(s)	301, 486, 773, 1031
BfuAI	ACCTGC	1 cut(s)	1012
BglI	GCCNNNNNGGC	1 cut(s)	699
BglII	AGATCT	2 cut(s)	231, 687
Bme1390I	CCNGG	8 cut(s)	40, 295, 365, 544, 587, 728, 853, 1052
Bme18I	GGWCC	2 cut(s)	367, 628
BmeT110I	CYCGRG	2 cut(s)	520, 649
BmgT120I	GGNCC	2 cut(s)	367, 628
BmiI	GGNNCC	5 cut(s)	44, 484, 619, 771, 861
BmrFI	CCNGG	8 cut(s)	40, 295, 365, 544, 587, 728, 853, 1052
BmsI	GCATC	1 cut(s)	825
BpiI	GAAGAC	1 cut(s)	894
BplI	GAGNNNNNCTC	4 cut(s)	221, 253, 833, 865
BpmI	CTGGAG	4 cut(s)	109, 356, 860, 1052
Bpu10I	CCTNAGC	1 cut(s)	607
BpuEI	CTTGAG	3 cut(s)	35, 161, 170
BpuMI	CCSGG	5 cut(s)	40, 365, 728, 853, 1052
BsaHI	GRCGYC	3 cut(s)	321, 483, 770
BsaI	GGTCTC	1 cut(s)	853
BsaJI	CCNNGG	6 cut(s)	38, 225, 310, 427, 613, 852
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 848, 878
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 294, 1070
Bse118I	RCCGGY	2 cut(s)	110, 479
BseBI	CCWGG	3 cut(s)	295, 544, 587
BseDI	CCNNGG	6 cut(s)	38, 225, 310, 427, 613, 852
BseGI	GGATG	1 cut(s)	594
BseLI	CCNNNNNNNGG	3 cut(s)	92, 294, 1070
BseMII	CTCAG	1 cut(s)	621
BseX3I	CGGCCG	1 cut(s)	705
BseXI	GCAGC	8 cut(s)	114, 287, 411, 423, 459, 543, 590, 1153
BsgI	GTGCAG	2 cut(s)	286, 1040
Bsh1236I	CGCG	3 cut(s)	312, 434, 553
Bsh1285I	CGRYCG	2 cut(s)	357, 708
BshFI	GGCC	5 cut(s)	585, 612, 707, 926, 1063
BshNI	GGYRCC	2 cut(s)	482, 769
BsiEI	CGRYCG	2 cut(s)	357, 708
BsiHKAI	GWGCWC	3 cut(s)	23, 650, 714
BsiHKCI	CYCGRG	2 cut(s)	520, 649
BslFI	GGGAC	2 cut(s)	166, 328
BslI	CCNNNNNNNGG	3 cut(s)	92, 294, 1070
BsmAI	GTCTC	2 cut(s)	853, 914
BsmBI	CGTCTC	1 cut(s)	914
BsmFI	GGGAC	2 cut(s)	166, 328
BsnI	GGCC	5 cut(s)	585, 612, 707, 926, 1063
Bso31I	GGTCTC	1 cut(s)	853
BsoBI	CYCGRG	2 cut(s)	520, 649
Bsp1286I	GDGCHC	5 cut(s)	23, 39, 47, 650, 714
Bsp143I	GATC	5 cut(s)	213, 231, 354, 561, 687
BspANI	GGCC	5 cut(s)	585, 612, 707, 926, 1063
BspCNI	CTCAG	1 cut(s)	620
BspFNI	CGCG	3 cut(s)	312, 434, 553
BspLI	GGNNCC	5 cut(s)	44, 484, 619, 771, 861
BspMAI	CTGCAG	2 cut(s)	104, 561
BspMI	ACCTGC	1 cut(s)	1012
BspT107I	GGYRCC	2 cut(s)	482, 769
BspTNI	GGTCTC	1 cut(s)	853
BsrBI	CCGCTC	1 cut(s)	789
BsrFI	RCCGGY	2 cut(s)	110, 479
BssAI	RCCGGY	2 cut(s)	110, 479
BssECI	CCNNGG	6 cut(s)	38, 225, 310, 427, 613, 852
BssMI	GATC	5 cut(s)	213, 231, 354, 561, 687
BssNI	GRCGYC	3 cut(s)	321, 483, 770
Bst2UI	CCWGG	3 cut(s)	295, 544, 587
Bst4CI	ACNGT	1 cut(s)	532
BstACI	GRCGYC	3 cut(s)	321, 483, 770
BstC8I	GCNNGC	4 cut(s)	23, 27, 481, 1139
BstDEI	CTNAG	1 cut(s)	607
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	1 cut(s)	594
BstFNI	CGCG	3 cut(s)	312, 434, 553
BstH2I	RGCGCY	4 cut(s)	301, 486, 773, 1031
BstHHI	GCGC	5 cut(s)	300, 434, 485, 772, 1030
BstKTI	GATC	5 cut(s)	216, 234, 357, 564, 690
BstMAI	GTCTC	2 cut(s)	853, 914
BstMBI	GATC	5 cut(s)	213, 231, 354, 561, 687
BstMCI	CGRYCG	2 cut(s)	357, 708
BstNI	CCWGG	3 cut(s)	295, 544, 587
BstSCI	CCNGG	8 cut(s)	38, 293, 363, 542, 585, 726, 851, 1050
BstSFI	CTRYAG	2 cut(s)	100, 557
BstUI	CGCG	3 cut(s)	312, 434, 553
BstV1I	GCAGC	8 cut(s)	114, 287, 411, 423, 459, 543, 590, 1153
BstV2I	GAAGAC	1 cut(s)	894
BstX2I	RGATCY	2 cut(s)	231, 687
BstYI	RGATCY	2 cut(s)	231, 687
BstZI	CGGCCG	1 cut(s)	705
BsuRI	GGCC	5 cut(s)	585, 612, 707, 926, 1063
BtgI	CCRYGG	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	825
BtsCI	GGATG	1 cut(s)	594
BtsIMutI	CAGTG	1 cut(s)	1143
BveI	ACCTGC	1 cut(s)	1012
Cac8I	GCNNGC	4 cut(s)	23, 27, 481, 1139
CfoI	GCGC	5 cut(s)	300, 434, 485, 772, 1030
Cfr10I	RCCGGY	2 cut(s)	110, 479
Cfr13I	GGNCC	2 cut(s)	367, 628
Cfr42I	CCGCGG	1 cut(s)	313
CseI	GACGC	2 cut(s)	329, 423
CviAII	CATG	1 cut(s)	766
DdeI	CTNAG	1 cut(s)	607
DinI	GGCGCC	2 cut(s)	484, 771
DpnI	GATC	5 cut(s)	215, 233, 356, 563, 689
DpnII	GATC	5 cut(s)	213, 231, 354, 561, 687
EaeI	YGGCCR	2 cut(s)	705, 924
EagI	CGGCCG	1 cut(s)	705
EciI	GGCGGA	2 cut(s)	1022, 1139
Ecl136II	GAGCTC	2 cut(s)	648, 712
EclXI	CGGCCG	1 cut(s)	705
Eco147I	AGGCCT	1 cut(s)	612
Eco24I	GRGCYC	4 cut(s)	39, 47, 650, 714
Eco31I	GGTCTC	1 cut(s)	853
Eco47I	GGWCC	2 cut(s)	367, 628
Eco52I	CGGCCG	1 cut(s)	705
Eco53kI	GAGCTC	2 cut(s)	648, 712
Eco88I	CYCGRG	2 cut(s)	520, 649
EcoICRI	GAGCTC	2 cut(s)	648, 712
EcoRII	CCWGG	3 cut(s)	293, 542, 585
EcoT38I	GRGCYC	4 cut(s)	39, 47, 650, 714
EgeI	GGCGCC	2 cut(s)	484, 771
EheI	GGCGCC	2 cut(s)	484, 771
Esp3I	CGTCTC	1 cut(s)	914
FaeI	CATG	1 cut(s)	769
FaiI	YATR	7 cut(s)	219, 767, 819, 873, 900, 917, 1070
FaqI	GGGAC	2 cut(s)	166, 328
FatI	CATG	1 cut(s)	765
FauI	CCCGC	5 cut(s)	353, 404, 782, 887, 1075
FblI	GTMKAC	2 cut(s)	456, 465
FokI	GGATG	1 cut(s)	581
FriOI	GRGCYC	4 cut(s)	39, 47, 650, 714
FspBI	CTAG	1 cut(s)	575
GlaI	GCGC	5 cut(s)	299, 433, 484, 771, 1029
GsuI	CTGGAG	4 cut(s)	109, 356, 860, 1052
HaeII	RGCGCY	4 cut(s)	301, 486, 773, 1031
HaeIII	GGCC	5 cut(s)	585, 612, 707, 926, 1063
HgaI	GACGC	2 cut(s)	329, 423
HhaI	GCGC	5 cut(s)	300, 434, 485, 772, 1030
Hin1I	GRCGYC	3 cut(s)	321, 483, 770
Hin1II	CATG	1 cut(s)	769
Hin6I	GCGC	5 cut(s)	298, 432, 483, 770, 1028
HinP1I	GCGC	5 cut(s)	298, 432, 483, 770, 1028
HinfI	GANTC	3 cut(s)	221, 986, 1109
HphI	GGTGA	2 cut(s)	790, 949
Hpy166II	GTNNAC	4 cut(s)	457, 466, 631, 1042
Hpy188I	TCNGA	3 cut(s)	82, 229, 996
Hpy188III	TCNNGA	1 cut(s)	643
Hpy8I	GTNNAC	4 cut(s)	457, 466, 631, 1042
Hpy99I	CGWCG	4 cut(s)	170, 329, 439, 479
HpyAV	CCTTC	4 cut(s)	82, 736, 743, 976
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	5 cut(s)	6, 102, 303, 559, 1021
HpyF3I	CTNAG	1 cut(s)	607
HpySE526I	ACGT	1 cut(s)	453
Hsp92I	GRCGYC	3 cut(s)	321, 483, 770
Hsp92II	CATG	1 cut(s)	769
HspAI	GCGC	5 cut(s)	298, 432, 483, 770, 1028
KasI	GGCGCC	2 cut(s)	482, 769
KroI	GCCGGC	1 cut(s)	479
KroNI	GCCGGC	1 cut(s)	481
KspI	CCGCGG	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	213, 231, 354, 561, 687
LmnI	GCTCC	5 cut(s)	42, 429, 623, 841, 859
Lsp1109I	GCAGC	8 cut(s)	114, 287, 411, 423, 459, 543, 590, 1153
LweI	GCATC	1 cut(s)	825
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	796
MalI	GATC	5 cut(s)	215, 233, 356, 563, 689
MbiI	CCGCTC	1 cut(s)	789
MboI	GATC	5 cut(s)	213, 231, 354, 561, 687
MboII	GAAGA	3 cut(s)	751, 899, 1024
MflI	RGATCY	2 cut(s)	231, 687
MhlI	GDGCHC	5 cut(s)	23, 39, 47, 650, 714
Mly113I	GGCGCC	2 cut(s)	483, 770
MlyI	GAGTC	2 cut(s)	980, 1118
MmeI	TCCRAC	2 cut(s)	105, 358
MreI	CGCCGGCG	1 cut(s)	479
MroNI	GCCGGC	1 cut(s)	479
MspA1I	CMGCKG	2 cut(s)	312, 603
MspR9I	CCNGG	8 cut(s)	40, 295, 365, 544, 587, 728, 853, 1052
MvaI	CCWGG	3 cut(s)	295, 544, 587
MvnI	CGCG	3 cut(s)	312, 434, 553
NaeI	GCCGGC	1 cut(s)	481
NarI	GGCGCC	2 cut(s)	483, 770
NciI	CCSGG	5 cut(s)	40, 365, 728, 853, 1052
NdeII	GATC	5 cut(s)	213, 231, 354, 561, 687
NgoMIV	GCCGGC	1 cut(s)	479
NlaIII	CATG	1 cut(s)	769
NlaIV	GGNNCC	5 cut(s)	44, 484, 619, 771, 861
NmeAIII	GCCGAG	3 cut(s)	408, 594, 733
NmuCI	GTSAC	1 cut(s)	796
PaeR7I	CTCGAG	1 cut(s)	649
PaqCI	CACCTGC	1 cut(s)	1012
PceI	AGGCCT	1 cut(s)	612
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PdiI	GCCGGC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	221
PflFI	GACNNNGTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	363
Ple19I	CGATCG	1 cut(s)	357
PleI	GAGTC	2 cut(s)	980, 1117
PluTI	GGCGCC	2 cut(s)	486, 773
PpsI	GAGTC	2 cut(s)	980, 1117
Psp124BI	GAGCTC	2 cut(s)	650, 714
Psp6I	CCWGG	3 cut(s)	293, 542, 585
PspGI	CCWGG	3 cut(s)	293, 542, 585
PspN4I	GGNNCC	5 cut(s)	44, 484, 619, 771, 861
PspPI	GGNCC	2 cut(s)	367, 628
PspXI	VCTCGAGB	1 cut(s)	649
PstI	CTGCAG	2 cut(s)	104, 561
PsuI	RGATCY	2 cut(s)	231, 687
PsyI	GACNNNGTC	1 cut(s)	323
PvuI	CGATCG	1 cut(s)	357
SacI	GAGCTC	2 cut(s)	650, 714
SacII	CCGCGG	1 cut(s)	313
Sau3AI	GATC	5 cut(s)	213, 231, 354, 561, 687
Sau96I	GGNCC	2 cut(s)	367, 628
SchI	GAGTC	2 cut(s)	980, 1118
ScrFI	CCNGG	8 cut(s)	40, 295, 365, 544, 587, 728, 853, 1052
SduI	GDGCHC	5 cut(s)	23, 39, 47, 650, 714
SfaNI	GCATC	1 cut(s)	825
SfcI	CTRYAG	2 cut(s)	100, 557
SfoI	GGCGCC	2 cut(s)	484, 771
Sfr274I	CTCGAG	1 cut(s)	649
Sfr303I	CCGCGG	1 cut(s)	313
SgrAI	CRCCGGYG	2 cut(s)	110, 479
SgrBI	CCGCGG	1 cut(s)	313
SinI	GGWCC	2 cut(s)	367, 628
SlaI	CTCGAG	1 cut(s)	649
SmlI	CTYRAG	4 cut(s)	50, 176, 185, 649
SmoI	CTYRAG	4 cut(s)	50, 176, 185, 649
SseBI	AGGCCT	1 cut(s)	612
SspDI	GGCGCC	2 cut(s)	482, 769
SspI	AATATT	1 cut(s)	1132
SspMI	CTAG	1 cut(s)	575
SstI	GAGCTC	2 cut(s)	650, 714
StuI	AGGCCT	1 cut(s)	612
StyD4I	CCNGG	8 cut(s)	38, 293, 363, 542, 585, 726, 851, 1050
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	3 cut(s)	357, 650, 737
TauI	GCSGC	3 cut(s)	117, 315, 556
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	1 cut(s)	1150
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	8 cut(s)	102, 300, 399, 411, 447, 556, 603, 1166
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	1 cut(s)	1149
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	1150
Tth111I	GACNNNGTC	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	367, 628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1102
XhoI	CTCGAG	1 cut(s)	649
XmiI	GTMKAC	2 cut(s)	456, 465
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.