MD07G1172200.v1.1

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
24925341 .. 24926534
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1172200.v1.1.491

Sequence Viewer

Length: 1194 bp
ATGTTCAGGACCAAAAAGAGCGCGCAGGCGATTGAGCCCAAGAGCCCCATCAAACACCGAAAATCCTCCTCCTCATCATTCCCCGACCCCTGCTCCGCCATTTTCAGCACCAGCATCGACAACTCCAGCTATAACTTCTCCAAATCCTCCACCTCCTCCTCCGTCGCCTCCCTCAAATCCCTTAAATCCTCCCTCCCTCAAAATCCCCAAATCTACGACCTCTCCGAGATCCGCTCCGCCACCTCCAACTTCCTCCCCCACCGCCGCCTCTCCTCCTCCTCCACCTCCTCCTCCTGGCGCTGCTCCATCCGCTCCGAAGACGCCGTCGTCTTCCAGCGCAAGTCCCGCCTCCCCCTCTCCCTCCCCGACCTCCACCACCGCCTCTCCCTCATCTCTAAATCCCACCACTCCAGCCTCATCAAGCTCCTCGGCGCCTCCCTCTCTGGCAGCTCCGTCTACCTCGTCTACGAATTCGTCGCCGGCGCCAACCTCGCTGACTGCCTCCGCAACCCGAAGAACCCGAGCTACACCGTCCTGTCGTCGTGGCTCTCCCGGATGCAGATCGCTACCGACCTCGCCCACGGCCTCGATTACATCCACCACTGCTCCGGCCTCGACTCTACCTTCGTCCACAACCACATCAAGAGCTCCAGCATCATCGTCTCCGAGCAGGACCACCTCGTGCTCGGCGCCAAAATCTGCCACTTCGGTACGGCAGAGCTCTGCGGCGAGACCCAGGCTCGGTCGACCAGAATGGAGGGCACGCGCGGGTACATGGCGCCGGAGTTTCAGCTCACCGGAATCGTGACCCAGAAGTGCGACGTCTACGCTTTTGGGGTGGTGCTCTTGGAGCTAATCTCCGGGGAGGAGCCGTTGAAGTACATAATGGACGGAAATGGCGGGGGCGGCGGGTATAGGAGGGTGAGTTTGATCGAGTCGGCGAGGGAGGCGTTGAGTGGGGGATGTGGCGGGGTGCGGAGGTGGGTGGATGGGAGGCTAAAGGATTCGTTTCCGATGGATGTGGCAGAGCAGATGGTATTGGTGGCGTTGGAGTGTATGGAGGAGGATCCGGATAGGCGGCCCGATATGGGTCCGGTTGCGGGTTTGGTTTCGAAGCTGTTTTTGGAGTCGCATGGTTGGGCGGAGAAGATGAGCGTGCCTATTGACATCTCTGTTTCGTTTGCCCCTCGCTGA

Protein Analysis

398

Amino Acids

43.41

Weight (kDa)

8.5

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 123 - 364 3e-24 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 128 - 361 9.7e-25 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AatII GACGTC 1 cut(s) 825
AccB1I GGYRCC 4 cut(s) 431, 482, 689, 778
AccBSI CCGCTC 2 cut(s) 234, 312
AccI GTMKAC 4 cut(s) 456, 465, 746, 825
AccII CGCG 3 cut(s) 23, 766, 768
AccIII TCCGGA 1 cut(s) 1069
AclWI GGATC 3 cut(s) 223, 1061, 1074
AcsI RAATTY 1 cut(s) 470
AcyI GRCGYC 6 cut(s) 321, 432, 483, 690, 779, 822
AdeI CACNNNGTG 1 cut(s) 682
AfaI GTAC 3 cut(s) 712, 773, 881
AfiI CCNNNNNNNGG 4 cut(s) 294, 741, 1088, 1100
AgsI TTSAA 1 cut(s) 877
AjnI CCWGG 2 cut(s) 293, 735
AjuI GAANNNNNNNTTGG 2 cut(s) 1106, 1138
AluBI AGCT 9 cut(s) 129, 424, 450, 525, 648, 721, 793, 853, 1117
AluI AGCT 9 cut(s) 129, 424, 450, 525, 648, 721, 793, 853, 1117
Alw21I GWGCWC 4 cut(s) 650, 687, 723, 846
Alw26I GTCTC 2 cut(s) 667, 725
AlwI GGATC 3 cut(s) 223, 1061, 1074
Ama87I CYCGRG 1 cut(s) 520
Aor13HI TCCGGA 1 cut(s) 1069
AoxI GGCC 3 cut(s) 583, 610, 1079
ApeKI GCWGC 2 cut(s) 300, 447
ApoI RAATTY 1 cut(s) 470
ArsI GACNNNNNNTTYG 4 cut(s) 309, 341, 608, 640
AspLEI GCGC 9 cut(s) 23, 25, 300, 339, 434, 485, 692, 768, 781
AspS9I GGNCC 4 cut(s) 9, 673, 1080, 1091
AsuC2I CCSGG 2 cut(s) 553, 862
AsuHPI GGTGA 2 cut(s) 787, 934
AsuII TTCGAA 1 cut(s) 1112
AvaI CYCGRG 1 cut(s) 520
AvaII GGWCC 3 cut(s) 9, 673, 1091
BaeGI GKGCMC 1 cut(s) 764
BamHI GGATCC 1 cut(s) 1066
BanI GGYRCC 4 cut(s) 431, 482, 689, 778
BanII GRGCYC 4 cut(s) 39, 47, 650, 723
BauI CACGAG 1 cut(s) 680
BbsI GAAGAC 2 cut(s) 322, 324
Bbv12I GWGCWC 4 cut(s) 650, 687, 723, 846
BbvI GCAGC 2 cut(s) 287, 459
BccI CCATC 5 cut(s) 56, 314, 983, 1009, 1027
BceAI ACGGC 4 cut(s) 308, 598, 729, 856
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 2 cut(s) 295, 737
BcnI CCSGG 2 cut(s) 553, 862
BcoDI GTCTC 2 cut(s) 667, 725
BfoI RGCGCY 5 cut(s) 301, 435, 486, 693, 782
BisI GCNGC 6 cut(s) 265, 301, 448, 727, 907, 1079
BlsI GCNGC 6 cut(s) 266, 302, 449, 728, 908, 1080
Bme1390I CCNGG 4 cut(s) 295, 553, 737, 862
Bme18I GGWCC 3 cut(s) 9, 673, 1091
BmeT110I CYCGRG 1 cut(s) 520
BmgT120I GGNCC 4 cut(s) 9, 673, 1080, 1091
BmiI GGNNCC 7 cut(s) 433, 484, 691, 780, 870, 1068, 1092
BmrFI CCNGG 4 cut(s) 295, 553, 737, 862
BmsI GCATC 3 cut(s) 123, 546, 663
BpiI GAAGAC 2 cut(s) 322, 324
BplI GAGNNNNNCTC 4 cut(s) 218, 250, 842, 874
BpmI CTGGAG 3 cut(s) 109, 394, 634
Bpu14I TTCGAA 1 cut(s) 1112
BpuMI CCSGG 2 cut(s) 553, 862
BsaBI GATNNNNATC 1 cut(s) 560
BsaHI GRCGYC 6 cut(s) 321, 432, 483, 690, 779, 822
BsaI GGTCTC 1 cut(s) 725
BsaJI CCNNGG 4 cut(s) 427, 580, 735, 861
BsaWI WCCGGW 3 cut(s) 797, 1069, 1093
Bsc4I CCNNNNNNNGG 4 cut(s) 294, 741, 1088, 1100
Bse118I RCCGGY 1 cut(s) 479
Bse8I GATNNNNATC 1 cut(s) 560
BseAI TCCGGA 1 cut(s) 1069
BseBI CCWGG 2 cut(s) 295, 737
BseDI CCNNGG 4 cut(s) 427, 580, 735, 861
BseGI GGATG 6 cut(s) 306, 561, 594, 968, 994, 1024
BseJI GATNNNNATC 1 cut(s) 560
BseLI CCNNNNNNNGG 4 cut(s) 294, 741, 1088, 1100
BsePI GCGCGC 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 764
BseXI GCAGC 2 cut(s) 287, 459
Bsh1236I CGCG 3 cut(s) 23, 766, 768
Bsh1285I CGRYCG 1 cut(s) 746
BshFI GGCC 3 cut(s) 585, 612, 1081
BshNI GGYRCC 4 cut(s) 431, 482, 689, 778
BsiEI CGRYCG 1 cut(s) 746
BsiHKAI GWGCWC 4 cut(s) 650, 687, 723, 846
BsiHKCI CYCGRG 1 cut(s) 520
BsiSI CCGG 8 cut(s) 480, 553, 609, 782, 798, 861, 1070, 1094
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 4 cut(s) 294, 741, 1088, 1100
BsmAI GTCTC 2 cut(s) 667, 725
BsmBI CGTCTC 1 cut(s) 667
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 3 cut(s) 585, 612, 1081
Bso31I GGTCTC 1 cut(s) 725
BsoBI CYCGRG 1 cut(s) 520
Bsp119I TTCGAA 1 cut(s) 1112
Bsp1286I GDGCHC 7 cut(s) 39, 47, 650, 687, 723, 764, 846
Bsp13I TCCGGA 1 cut(s) 1069
Bsp143I GATC 4 cut(s) 228, 561, 930, 1066
BspANI GGCC 3 cut(s) 585, 612, 1081
BspEI TCCGGA 1 cut(s) 1069
BspFNI CGCG 3 cut(s) 23, 766, 768
BspLI GGNNCC 7 cut(s) 433, 484, 691, 780, 870, 1068, 1092
BspPI GGATC 3 cut(s) 223, 1061, 1074
BspT104I TTCGAA 1 cut(s) 1112
BspT107I GGYRCC 4 cut(s) 431, 482, 689, 778
BspTNI GGTCTC 1 cut(s) 725
BsrBI CCGCTC 2 cut(s) 234, 312
BsrFI RCCGGY 1 cut(s) 479
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 4 cut(s) 427, 580, 735, 861
BssHII GCGCGC 1 cut(s) 21
BssMI GATC 4 cut(s) 228, 561, 930, 1066
BssNI GRCGYC 6 cut(s) 321, 432, 483, 690, 779, 822
BssSI CACGAG 1 cut(s) 680
Bst2BI CACGAG 1 cut(s) 680
Bst2UI CCWGG 2 cut(s) 295, 737
Bst4CI ACNGT 1 cut(s) 532
BstACI GRCGYC 6 cut(s) 321, 432, 483, 690, 779, 822
BstBI TTCGAA 1 cut(s) 1112
BstC8I GCNNGC 5 cut(s) 23, 27, 481, 764, 1157
BstDSI CCRYGG 1 cut(s) 580
BstF5I GGATG 6 cut(s) 306, 561, 594, 968, 994, 1024
BstFNI CGCG 3 cut(s) 23, 766, 768
BstH2I RGCGCY 5 cut(s) 301, 435, 486, 693, 782
BstHHI GCGC 9 cut(s) 23, 25, 300, 339, 434, 485, 692, 768, 781
BstKTI GATC 4 cut(s) 231, 564, 933, 1069
BstMAI GTCTC 2 cut(s) 667, 725
BstMBI GATC 4 cut(s) 228, 561, 930, 1066
BstMCI CGRYCG 1 cut(s) 746
BstMWI GCNNNNNNNGC 6 cut(s) 309, 345, 491, 850, 906, 947
BstNI CCWGG 2 cut(s) 295, 737
BstSCI CCNGG 4 cut(s) 293, 551, 735, 860
BstSLI GKGCMC 1 cut(s) 764
BstUI CGCG 3 cut(s) 23, 766, 768
BstV1I GCAGC 2 cut(s) 287, 459
BstV2I GAAGAC 2 cut(s) 322, 324
BstX2I RGATCY 2 cut(s) 228, 1066
BstYI RGATCY 2 cut(s) 228, 1066
BsuRI GGCC 3 cut(s) 585, 612, 1081
BtgI CCRYGG 1 cut(s) 580
BtsCI GGATG 6 cut(s) 306, 561, 594, 968, 994, 1024
BtsI GCAGTG 1 cut(s) 601
BtsIMutI CAGTG 1 cut(s) 601
Cac8I GCNNGC 5 cut(s) 23, 27, 481, 764, 1157
CfoI GCGC 9 cut(s) 23, 25, 300, 339, 434, 485, 692, 768, 781
Cfr10I RCCGGY 1 cut(s) 479
Cfr13I GGNCC 4 cut(s) 9, 673, 1080, 1091
CseI GACGC 1 cut(s) 329
Csp6I GTAC 3 cut(s) 711, 772, 880
CviAII CATG 2 cut(s) 775, 1133
CviQI GTAC 3 cut(s) 711, 772, 880
DinI GGCGCC 4 cut(s) 433, 484, 691, 780
DpnI GATC 4 cut(s) 230, 563, 932, 1068
DpnII GATC 4 cut(s) 228, 561, 930, 1066
DraIII CACNNNGTG 1 cut(s) 682
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
EciI GGCGGA 3 cut(s) 85, 226, 1157
Ecl136II GAGCTC 2 cut(s) 648, 721
Eco24I GRGCYC 4 cut(s) 39, 47, 650, 723
Eco31I GGTCTC 1 cut(s) 725
Eco47I GGWCC 3 cut(s) 9, 673, 1091
Eco53kI GAGCTC 2 cut(s) 648, 721
Eco88I CYCGRG 1 cut(s) 520
EcoICRI GAGCTC 2 cut(s) 648, 721
EcoRI GAATTC 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 293, 735
EcoT38I GRGCYC 4 cut(s) 39, 47, 650, 723
EgeI GGCGCC 4 cut(s) 433, 484, 691, 780
EheI GGCGCC 4 cut(s) 433, 484, 691, 780
Esp3I CGTCTC 1 cut(s) 667
FaeI CATG 2 cut(s) 778, 1136
FaiI YATR 7 cut(s) 132, 776, 884, 915, 1058, 1088, 1134
FaqI GGGAC 1 cut(s) 328
FatI CATG 2 cut(s) 774, 1132
FauI CCCGC 6 cut(s) 353, 761, 893, 902, 962, 1093
FblI GTMKAC 4 cut(s) 456, 465, 746, 825
Fnu4HI GCNGC 6 cut(s) 265, 301, 448, 727, 907, 1079
FokI GGATG 6 cut(s) 293, 568, 581, 975, 1001, 1031
FriOI GRGCYC 4 cut(s) 39, 47, 650, 723
Fsp4HI GCNGC 6 cut(s) 265, 301, 448, 727, 907, 1079
GlaI GCGC 9 cut(s) 22, 24, 299, 338, 433, 484, 691, 767, 780
GluI GCNGC 6 cut(s) 265, 301, 448, 727, 907, 1079
GsuI CTGGAG 3 cut(s) 109, 394, 634
HaeII RGCGCY 5 cut(s) 301, 435, 486, 693, 782
HaeIII GGCC 3 cut(s) 585, 612, 1081
HapII CCGG 8 cut(s) 480, 553, 609, 782, 798, 861, 1070, 1094
HgaI GACGC 1 cut(s) 329
HhaI GCGC 9 cut(s) 23, 25, 300, 339, 434, 485, 692, 768, 781
Hin1I GRCGYC 6 cut(s) 321, 432, 483, 690, 779, 822
Hin1II CATG 2 cut(s) 778, 1136
Hin6I GCGC 9 cut(s) 21, 23, 298, 337, 432, 483, 690, 766, 779
HinP1I GCGC 9 cut(s) 21, 23, 298, 337, 432, 483, 690, 766, 779
HincII GTYRAC 1 cut(s) 747
HindII GTYRAC 1 cut(s) 747
HinfI GANTC 5 cut(s) 617, 801, 935, 1004, 1127
HpaII CCGG 8 cut(s) 480, 553, 609, 782, 798, 861, 1070, 1094
HphI GGTGA 2 cut(s) 787, 934
Hpy166II GTNNAC 5 cut(s) 457, 466, 631, 747, 826
Hpy188I TCNGA 4 cut(s) 226, 316, 667, 1014
Hpy188III TCNNGA 4 cut(s) 7, 643, 805, 1070
Hpy8I GTNNAC 5 cut(s) 457, 466, 631, 747, 826
Hpy99I CGWCG 5 cut(s) 167, 329, 479, 544, 824
HpyAV CCTTC 1 cut(s) 634
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4IV ACGT 1 cut(s) 822
HpyCH4V TGCA 1 cut(s) 559
HpyF10VI GCNNNNNNNGC 6 cut(s) 309, 345, 491, 850, 906, 947
HpySE526I ACGT 1 cut(s) 822
Hsp92I GRCGYC 6 cut(s) 321, 432, 483, 690, 779, 822
Hsp92II CATG 2 cut(s) 778, 1136
HspAI GCGC 9 cut(s) 21, 23, 298, 337, 432, 483, 690, 766, 779
KasI GGCGCC 4 cut(s) 431, 482, 689, 778
Kpn2I TCCGGA 1 cut(s) 1069
KroI GCCGGC 1 cut(s) 479
KroNI GCCGGC 1 cut(s) 481
Kzo9I GATC 4 cut(s) 228, 561, 930, 1066
Lsp1109I GCAGC 2 cut(s) 287, 459
LweI GCATC 3 cut(s) 123, 546, 663
MaeII ACGT 1 cut(s) 822
MaeIII GTNAC 1 cut(s) 805
MalI GATC 4 cut(s) 230, 563, 932, 1068
MbiI CCGCTC 2 cut(s) 234, 312
MboI GATC 4 cut(s) 228, 561, 930, 1066
MboII GAAGA 4 cut(s) 322, 329, 526, 1159
MflI RGATCY 2 cut(s) 228, 1066
MhlI GDGCHC 7 cut(s) 39, 47, 650, 687, 723, 764, 846
MluCI AATT 1 cut(s) 470
Mly113I GGCGCC 4 cut(s) 432, 483, 690, 779
MlyI GAGTC 3 cut(s) 611, 944, 1136
MmeI TCCRAC 2 cut(s) 270, 1029
MreI CGCCGGCG 1 cut(s) 479
MroI TCCGGA 1 cut(s) 1069
MroNI GCCGGC 1 cut(s) 479
MseI TTAA 1 cut(s) 183
MspI CCGG 8 cut(s) 480, 553, 609, 782, 798, 861, 1070, 1094
MspR9I CCNGG 4 cut(s) 295, 553, 737, 862
MvaI CCWGG 2 cut(s) 295, 737
MvnI CGCG 3 cut(s) 23, 766, 768
MwoI GCNNNNNNNGC 6 cut(s) 309, 345, 491, 850, 906, 947
NaeI GCCGGC 1 cut(s) 481
NarI GGCGCC 4 cut(s) 432, 483, 690, 779
NciI CCSGG 2 cut(s) 553, 862
NdeII GATC 4 cut(s) 228, 561, 930, 1066
NgoMIV GCCGGC 1 cut(s) 479
NlaIII CATG 2 cut(s) 778, 1136
NlaIV GGNNCC 7 cut(s) 433, 484, 691, 780, 870, 1068, 1092
NmeAIII GCCGAG 2 cut(s) 408, 666
NmuCI GTSAC 1 cut(s) 805
NspV TTCGAA 1 cut(s) 1112
PauI GCGCGC 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 801, 1004
PflFI GACNNNGTC 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 551
PkrI GCNGC 6 cut(s) 266, 302, 449, 728, 908, 1080
PleI GAGTC 3 cut(s) 611, 943, 1135
PluTI GGCGCC 4 cut(s) 435, 486, 693, 782
PpsI GAGTC 3 cut(s) 611, 943, 1135
Psp124BI GAGCTC 2 cut(s) 650, 723
Psp6I CCWGG 2 cut(s) 293, 735
PspGI CCWGG 2 cut(s) 293, 735
PspN4I GGNNCC 7 cut(s) 433, 484, 691, 780, 870, 1068, 1092
PspPI GGNCC 4 cut(s) 9, 673, 1080, 1091
PsrI GAACNNNNNNTAC 2 cut(s) 509, 541
PsuI RGATCY 2 cut(s) 228, 1066
PsyI GACNNNGTC 1 cut(s) 323
PteI GCGCGC 1 cut(s) 21
RsaI GTAC 3 cut(s) 712, 773, 881
RsaNI GTAC 3 cut(s) 711, 772, 880
SacI GAGCTC 2 cut(s) 650, 723
SalI GTCGAC 1 cut(s) 745
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 6 cut(s) 265, 301, 448, 727, 907, 1079
Sau3AI GATC 4 cut(s) 228, 561, 930, 1066
Sau96I GGNCC 4 cut(s) 9, 673, 1080, 1091
SchI GAGTC 3 cut(s) 611, 944, 1136
ScrFI CCNGG 4 cut(s) 295, 553, 737, 862
SduI GDGCHC 7 cut(s) 39, 47, 650, 687, 723, 764, 846
SfaNI GCATC 3 cut(s) 123, 546, 663
SfoI GGCGCC 4 cut(s) 433, 484, 691, 780
SfuI TTCGAA 1 cut(s) 1112
SgrAI CRCCGGYG 1 cut(s) 479
SinI GGWCC 3 cut(s) 9, 673, 1091
Sse9I AATT 1 cut(s) 470
SspDI GGCGCC 4 cut(s) 431, 482, 689, 778
SstI GAGCTC 2 cut(s) 650, 723
StyD4I CCNGG 4 cut(s) 293, 551, 735, 860
TaaI ACNGT 1 cut(s) 532
TaiI ACGT 1 cut(s) 825
TaqI TCGA 6 cut(s) 117, 588, 615, 746, 933, 1112
TaqII GACCGA 1 cut(s) 732
TasI AATT 1 cut(s) 470
TatI WGTACW 1 cut(s) 879
TauI GCSGC 4 cut(s) 267, 729, 909, 1081
TfiI GAWTC 2 cut(s) 801, 1004
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 608
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 2 cut(s) 300, 447
Tsp45I GTSAC 1 cut(s) 805
TspGWI ACGGA 3 cut(s) 151, 442, 906
TspRI CASTG 1 cut(s) 608
Tth111I GACNNNGTC 1 cut(s) 323
VpaK11BI GGWCC 3 cut(s) 9, 673, 1091
XapI RAATTY 1 cut(s) 470
XmiI GTMKAC 4 cut(s) 456, 465, 746, 825
ZraI GACGTC 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.