Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004825

Physical Location & Seq

Genomic Coordinates Reverse (-)

16816453 .. 16816830

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1106300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCAGATCGTCACTGACCTTGCCCACGGCCTTGATTACATGCACCACGACTCTGGCCTTGACTCAACCTTCGTCCATAACCACATCAAAAGCTCCAGCTTCATCATCTCCAAGGAGGACCACCTTGTGCTCGACGCCAAAGTCTGCCATTTCGGCACAGCAGAACTCTACGACTGGACCCAGGCTCGGTTGACGAAACTAAAGGGCACGCGCAGTTACATGGCGCCAGAGTTTGAGGAGCAAGGAGAACACTGTGGGTTTGGGGAAGACAGGAAGGGGAAGAAAAGGGTGGGTTTGGGGAAGACGGGATCTAGGTTTGGGTTTAGGGTGGGTCCCCCATGCAAAAAAAAATTTAATGATTTTATTTTAGTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.18

Weight (kDa)

8.45

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 79	2.5e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57120
fragaria_vesca	FvH4_3g31560 FvH4_7g19030
malus_domestica	MD01G1105700.v1.1 MD03G1123700.v1.1 MD07G1172200.v1.1 MD12G1106300.v1.1
prunus_persica	Prupe.2G211100_v2.0.a1 Prupe.6G106100_v2.0.a1
pyrus_communis	pycom01g13250 pycom07g16650 pycom17g07150
rosa_chinensis	RchiOBHm_Chr1g0362941 RchiOBHm_Chr5g0058201
rosa_laevigata	RLG00000027610 RLG00000035203
rosa_multiflora	Rmu_sc0000367.1_g000042 Rmu_sc0019019.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022330 Rroxscaffold_4G00293630
rosa_rugosa	Rorug01G0302200 Rorug05G0312700
rosa_samantha	Rh1AG311800 Rh1BG274900 Rh1CG292100 Rh1DG305600 Rh5BG391900 Rh5CG415800 Rh5DG406400
rosa_wichuraiana	Rw1G027630 Rw5G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	223
AccII	CGCG	1 cut(s)	211
AclWI	GGATC	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	2 cut(s)	135, 224
AdeI	CACNNNGTG	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	2 cut(s)	93, 99
AluI	AGCT	2 cut(s)	93, 99
Alw21I	GWGCWC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	2 cut(s)	28, 55
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	2 cut(s)	213, 226
AspS9I	GGNCC	3 cut(s)	118, 177, 332
AvaII	GGWCC	3 cut(s)	118, 177, 332
BaeGI	GKGCMC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	223
BbsI	GAAGAC	2 cut(s)	273, 308
Bbv12I	GWGCWC	1 cut(s)	132
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	182
BfaI	CTAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	227
BglI	GCCNNNNNGGC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	3 cut(s)	118, 177, 332
BmgT120I	GGNCC	3 cut(s)	118, 177, 332
BmiI	GGNNCC	4 cut(s)	179, 225, 333, 334
BmrFI	CCNGG	1 cut(s)	182
BpiI	GAAGAC	2 cut(s)	273, 308
BpmI	CTGGAG	1 cut(s)	79
BsaHI	GRCGYC	2 cut(s)	135, 224
BsaJI	CCNNGG	3 cut(s)	25, 111, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	3 cut(s)	25, 111, 180
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	30, 57
BshNI	GGYRCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	30, 57
Bsp1286I	GDGCHC	2 cut(s)	132, 209
Bsp143I	GATC	2 cut(s)	6, 308
BspANI	GGCC	2 cut(s)	30, 57
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	4 cut(s)	179, 225, 333, 334
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	3 cut(s)	25, 111, 180
BssMI	GATC	2 cut(s)	6, 308
BssNI	GRCGYC	2 cut(s)	135, 224
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	254
BstACI	GRCGYC	2 cut(s)	135, 224
BstC8I	GCNNGC	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	25
BstFNI	CGCG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	213, 226
BstKTI	GATC	2 cut(s)	9, 311
BstMBI	GATC	2 cut(s)	6, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	209
BstUI	CGCG	1 cut(s)	211
BstV2I	GAAGAC	2 cut(s)	273, 308
BstX2I	RGATCY	1 cut(s)	308
BstXI	CCANNNNNNTGG	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	30, 57
BtgI	CCRYGG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	12, 250
Cac8I	GCNNGC	1 cut(s)	209
CfoI	GCGC	2 cut(s)	213, 226
Cfr13I	GGNCC	3 cut(s)	118, 177, 332
CseI	GACGC	1 cut(s)	143
CviAII	CATG	3 cut(s)	40, 220, 339
CviJI	RGCY	5 cut(s)	30, 57, 93, 99, 185
CviKI_1	RGCY	5 cut(s)	30, 57, 93, 99, 185
DinI	GGCGCC	1 cut(s)	225
DpnI	GATC	2 cut(s)	8, 310
DpnII	GATC	2 cut(s)	6, 308
DraIII	CACNNNGTG	1 cut(s)	127
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	111
Eco47I	GGWCC	3 cut(s)	118, 177, 332
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	225
EheI	GGCGCC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	3 cut(s)	43, 223, 342
FaiI	YATR	4 cut(s)	41, 78, 221, 340
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	3 cut(s)	39, 219, 338
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	2 cut(s)	212, 225
GsuI	CTGGAG	1 cut(s)	79
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	30, 57
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	213, 226
Hin1I	GRCGYC	2 cut(s)	135, 224
Hin1II	CATG	3 cut(s)	43, 223, 342
Hin6I	GCGC	2 cut(s)	211, 224
HinP1I	GCGC	2 cut(s)	211, 224
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	50, 62
Hpy166II	GTNNAC	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	192
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	79, 268
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	4, 43, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
Hsp92I	GRCGYC	2 cut(s)	135, 224
Hsp92II	CATG	3 cut(s)	43, 223, 342
HspAI	GCGC	2 cut(s)	211, 224
KasI	GGCGCC	1 cut(s)	223
KflI	GGGWCCC	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	6, 308
LmnI	GCTCC	2 cut(s)	98, 238
LpnPI	CCDG	7 cut(s)	39, 109, 160, 167, 194, 240, 256
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	2 cut(s)	10, 215
MalI	GATC	2 cut(s)	8, 310
MboI	GATC	2 cut(s)	6, 308
MboII	GAAGA	3 cut(s)	278, 292, 313
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	2 cut(s)	132, 209
MluCI	AATT	1 cut(s)	350
Mly113I	GGCGCC	1 cut(s)	224
MlyI	GAGTC	2 cut(s)	44, 56
MnlI	CCTC	2 cut(s)	109, 229
MseI	TTAA	2 cut(s)	354, 376
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	153
NarI	GGCGCC	1 cut(s)	224
NdeII	GATC	2 cut(s)	6, 308
NlaIII	CATG	3 cut(s)	43, 223, 342
NlaIV	GGNNCC	4 cut(s)	179, 225, 333, 334
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	43
PleI	GAGTC	2 cut(s)	44, 56
PluTI	GGCGCC	1 cut(s)	227
PpsI	GAGTC	2 cut(s)	44, 56
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	4 cut(s)	179, 225, 333, 334
PspPI	GGNCC	3 cut(s)	118, 177, 332
PspPPI	RGGWCCY	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	354, 376
Sau3AI	GATC	2 cut(s)	6, 308
Sau96I	GGNCC	3 cut(s)	118, 177, 332
SchI	GAGTC	2 cut(s)	44, 56
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	2 cut(s)	132, 209
SetI	ASST	6 cut(s)	21, 71, 95, 101, 126, 317
SfoI	GGCGCC	1 cut(s)	225
SinI	GGWCC	3 cut(s)	118, 177, 332
Sse9I	AATT	1 cut(s)	350
SspDI	GGCGCC	1 cut(s)	223
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	354, 376
Tru9I	TTAA	2 cut(s)	354, 376
TscAI	CASTG	2 cut(s)	19, 257
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	91
TspRI	CASTG	2 cut(s)	19, 257
VpaK11BI	GGWCC	3 cut(s)	118, 177, 332
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.