Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004825

Physical Location & Seq

Genomic Coordinates Forward (+)

5150118 .. 5150542

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g07150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTGTTACCCTTTAAAAAAAAACAAAAAAGAAAAAACCCCAAATCATCATATTCCCGAACCCCCTTCCCTGCAACCTAGATCTTGTCTTCCCCAAAACCTACCCCTTTCTTCCCCCTCCCGTATACCCCAAACCCACTGCGCACCCATTCTCCACCTCCTCCTCCGTCCGTTCCCTCAAATCTTCAAAGCCTCCCTCCTCTACGACTTCTCCGAGAGTGGCTCCGCCACCTCCAACTTCCTCCCCCACCGTCGCCTCTCCTCCTCCTCCTGGCGCTGCTTCATTCGATCCAAAGACCCAGTCACCTTCCAGCGCCGGAGTTTCAGGAGCAAGGCAAGGAAAACAGGGTGGTCCCGGAGAAGAGGACGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

125

Amino Acids

14.44

Weight (kDa)

11.31

Isoelectric Point (pI)

98.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57120
fragaria_vesca	FvH4_3g31560 FvH4_7g19030
malus_domestica	MD01G1105700.v1.1 MD03G1123700.v1.1 MD07G1172200.v1.1 MD12G1106300.v1.1
prunus_persica	Prupe.2G211100_v2.0.a1 Prupe.6G106100_v2.0.a1
pyrus_communis	pycom01g13250 pycom07g16650 pycom17g07150
rosa_chinensis	RchiOBHm_Chr1g0362941 RchiOBHm_Chr5g0058201
rosa_laevigata	RLG00000027610 RLG00000035203
rosa_multiflora	Rmu_sc0000367.1_g000042 Rmu_sc0019019.1_g000001
rosa_roxburghii	Rroxscaffold_1G00022330 Rroxscaffold_4G00293630
rosa_rugosa	Rorug01G0302200 Rorug05G0312700
rosa_samantha	Rh1AG311800 Rh1BG274900 Rh1CG292100 Rh1DG305600 Rh5BG391900 Rh5CG415800 Rh5DG406400
rosa_wichuraiana	Rw1G027630 Rw5G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	124
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	269
AlwI	GGATC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	276
ArsI	GACNNNNNNTTYG	2 cut(s)	285, 317
AspLEI	GCGC	3 cut(s)	143, 276, 315
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	355
BfaI	CTAG	1 cut(s)	78
BfoI	RGCGCY	2 cut(s)	277, 316
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	2 cut(s)	271, 355
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	223, 353
BmrFI	CCNGG	2 cut(s)	271, 355
BmrI	ACTGGG	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpuMI	CCSGG	1 cut(s)	355
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	6 cut(s)	149, 152, 188, 250, 253, 256
BseXI	GCAGC	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	316, 355
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	80, 287
BspACI	CCGC	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	223, 353
BspPI	GGATC	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	299
BssMI	GATC	2 cut(s)	80, 287
BssNAI	GTATAC	1 cut(s)	125
Bst1107I	GTATAC	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	355
BstH2I	RGCGCY	2 cut(s)	277, 316
BstHHI	GCGC	3 cut(s)	143, 276, 315
BstKTI	GATC	2 cut(s)	83, 290
BstMBI	GATC	2 cut(s)	80, 287
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	269, 353
BstV1I	GCAGC	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BstZ17I	GTATAC	1 cut(s)	125
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
CfoI	GCGC	3 cut(s)	143, 276, 315
Cfr13I	GGNCC	1 cut(s)	351
CviJI	RGCY	2 cut(s)	191, 222
CviKI_1	RGCY	2 cut(s)	191, 222
DpnI	GATC	2 cut(s)	82, 289
DpnII	GATC	2 cut(s)	80, 287
DraI	TTTAAA	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	355
EarI	CTCTTC	1 cut(s)	355
EciI	GGCGGA	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	269
FaiI	YATR	2 cut(s)	51, 125
FaqI	GGGAC	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	277
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	1 cut(s)	78
FspI	TGCGCA	1 cut(s)	142
GlaI	GCGC	3 cut(s)	142, 275, 314
GluI	GCNGC	1 cut(s)	277
HaeII	RGCGCY	2 cut(s)	277, 316
HapII	CCGG	2 cut(s)	316, 355
HhaI	GCGC	3 cut(s)	143, 276, 315
Hin6I	GCGC	3 cut(s)	141, 274, 313
HinP1I	GCGC	3 cut(s)	141, 274, 313
HpaII	CCGG	2 cut(s)	316, 355
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	56, 325
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	1 cut(s)	255
HpyAV	CCTTC	2 cut(s)	75, 316
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	73
HspAI	GCGC	3 cut(s)	141, 274, 313
Kzo9I	GATC	2 cut(s)	80, 287
LmnI	GCTCC	2 cut(s)	227, 327
LpnPI	CCDG	9 cut(s)	83, 256, 283, 310, 312, 323, 329, 330, 368
Lsp1109I	GCAGC	1 cut(s)	263
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	5, 301
MalI	GATC	2 cut(s)	82, 289
MboI	GATC	2 cut(s)	80, 287
MboII	GAAGA	4 cut(s)	80, 102, 175, 372
MflI	RGATCY	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	258
MseI	TTAA	1 cut(s)	14
MspI	CCGG	2 cut(s)	316, 355
MspR9I	CCNGG	2 cut(s)	271, 355
MvaI	CCWGG	1 cut(s)	271
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	2 cut(s)	80, 287
NlaIV	GGNNCC	2 cut(s)	223, 353
NmuCI	GTSAC	1 cut(s)	301
NsbI	TGCGCA	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PflFI	GACNNNGTC	1 cut(s)	299
PfoI	TCCNGGA	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	223, 353
PspPI	GGNCC	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	80, 287
Sau96I	GGNCC	1 cut(s)	351
ScrFI	CCNGG	2 cut(s)	271, 355
SetI	ASST	5 cut(s)	79, 102, 159, 233, 308
SinI	GGWCC	1 cut(s)	351
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	269, 353
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	1 cut(s)	271
TspGWI	ACGGA	2 cut(s)	155, 159
TspRI	CASTG	1 cut(s)	143
Tth111I	GACNNNGTC	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.