pycom01g13250

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
13758144 .. 13759388
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13250.1

Sequence Viewer

Length: 1245 bp
ATGATTGCCGCCGCTGCCCACGCCACCTCCTCCGCCAGCGGCGCCGCCCCTATGTGCAGGACCAAAAAGAGCACGCAGGCGATTGAGCCCAAGAGCCCCAATCAACACCGACAATCCTCCTCCTCTGTCCCCGACCCCTCCTTCGCCCATTTCAGCACCAACGACAACAACTCCAGCTACAACTTCTCCAAATCCTCCACCTCCTCCTCCGTCCCCTCCCTCAGATCCTTCAAAGCCTCCCTCCCTGAAAACCCCCAAATCTACGACTTCTCCGAGATCCGCTCCGCCACCTCGAACTTCCTCCCCCACCGCCGCCTCTCCTCCTCCTCCACTTCCTCCTCCTGGCGCTGCTCCCTTCGATCCAAGGACGCCGTCATCTTCCAGCGCAAATCCCGCATCCCCATCTCCCTCCCCGACCTCCAGCGCCGCCTCTCCCTCATCTCCAAATCCCACCACTCCAGCCTCATCAAGCTCCTCGGCGCCTCCCTCTCCGGGAGCTACGTCTACATCGTCTACGAATTCGTCGCCGGCGCCAGCCTCGCCGACTGCCTCCGCAACCCGAAGAACCCGAGCTATACCGTCCTATCGTCGTGGCTCTCCCGGATGCAGATCGCCACCGACCTCGCCCACGGCCTCGATTACATGCACCACGGCTCCGGCCTCGACTCAACCTTCGTCCACAACCACATCAAGAGCTCCAGCATCATCGTCTCCGAGGAGGACAACCTCGTGCTCGGTGCCAAAATCTGCCATTTCGGCACGGCGGAACTCTGCGGCGAGACCCAGGCTCGGTCGACAAAACTGGAGGGCACGCGCGGGTACATGGCGCCGGAGTTTCAGCTCACCGGAATCGTGACCCAGAAGTGCGATGTCTACGCTTTTGGGGTCGTTCTATTGGAGCTGATCTCCGGGGCGGAACCGCTGAAGTACATAATGGACGAAAATGGCGCCGATGGCGTGTATAGGAGGGTGAGTGTGATTGAGTCTGCGAGGGAGGCGGTGAGGGGTGGGGGACGTGGCGGGGTGAGGAGGTGGGTGGATAGGAGGCTGAAGGACTCGTTTCCGATGGATGTGGCGGAGAAAATGGTGCAGGTGGCGTTGGAGTGTGTGGAAGAGGATCCGGATAGGCGGCCGGATATGGATCGGGTAGCCGGTTTGGTTTCGAAGCTGTTTCTGGAGTCGCATAGTTGGGCGGAGAAGATGGGCGTCCCTATCGACATCTCGGTTTCATTTGCCCCGCGCTGA

Protein Analysis

415

Amino Acids

45.39

Weight (kDa)

8.87

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 139 - 383 1.3e-25 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 140 - 382 2.3e-26 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1081
Acc36I ACCTGC 1 cut(s) 1081
AccB1I GGYRCC 6 cut(s) 41, 479, 530, 737, 826, 947
AccBSI CCGCTC 1 cut(s) 282
AccI GTMKAC 4 cut(s) 504, 513, 794, 873
AccII CGCG 3 cut(s) 814, 816, 1240
AccIII TCCGGA 1 cut(s) 1120
AclWI GGATC 6 cut(s) 219, 271, 354, 1112, 1125, 1149
AcoI YGGCCR 1 cut(s) 1130
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 2 cut(s) 944, 1070
AcyI GRCGYC 7 cut(s) 42, 369, 480, 531, 827, 948, 1206
AfaI GTAC 2 cut(s) 821, 929
AfiI CCNNNNNNNGG 3 cut(s) 342, 492, 789
AgsI TTSAA 1 cut(s) 232
AjiI CACGTC 1 cut(s) 1016
AjnI CCWGG 2 cut(s) 341, 783
AluBI AGCT 8 cut(s) 177, 472, 498, 573, 696, 841, 901, 1168
AluI AGCT 8 cut(s) 177, 472, 498, 573, 696, 841, 901, 1168
Alw21I GWGCWC 3 cut(s) 74, 698, 735
Alw26I GTCTC 2 cut(s) 715, 773
AlwI GGATC 6 cut(s) 219, 271, 354, 1112, 1125, 1149
Ama87I CYCGRG 1 cut(s) 568
Aor13HI TCCGGA 1 cut(s) 1120
AoxI GGCC 3 cut(s) 631, 658, 1130
ApeKI GCWGC 2 cut(s) 14, 348
ApoI RAATTY 1 cut(s) 518
ArsI GACNNNNNNTTYG 4 cut(s) 125, 157, 656, 688
AspS9I GGNCC 1 cut(s) 60
AsuC2I CCSGG 3 cut(s) 493, 601, 910
AsuHPI GGTGA 4 cut(s) 835, 982, 1012, 1036
AsuII TTCGAA 1 cut(s) 1163
AvaI CYCGRG 1 cut(s) 568
AvaII GGWCC 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 812
BamHI GGATCC 1 cut(s) 1117
BanI GGYRCC 6 cut(s) 41, 479, 530, 737, 826, 947
BanII GRGCYC 3 cut(s) 90, 98, 698
BauI CACGAG 1 cut(s) 728
Bbv12I GWGCWC 3 cut(s) 74, 698, 735
BbvI GCAGC 1 cut(s) 335
BccI CCATC 4 cut(s) 410, 947, 1060, 1195
BceAI ACGGC 4 cut(s) 356, 646, 667, 777
BciT130I CCWGG 2 cut(s) 343, 785
BcnI CCSGG 3 cut(s) 493, 601, 910
BcoDI GTCTC 2 cut(s) 715, 773
BfoI RGCGCY 7 cut(s) 45, 349, 427, 483, 534, 830, 951
BfuAI ACCTGC 1 cut(s) 1081
BglI GCCNNNNNGGC 1 cut(s) 756
Bme1390I CCNGG 5 cut(s) 343, 493, 601, 785, 910
Bme18I GGWCC 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 568
BmgBI CACGTC 1 cut(s) 1016
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 9 cut(s) 43, 481, 532, 655, 739, 828, 918, 949, 1119
BmrFI CCNGG 5 cut(s) 343, 493, 601, 785, 910
BmsI GCATC 3 cut(s) 405, 594, 711
BplI GAGNNNNNCTC 4 cut(s) 266, 298, 890, 922
BpmI CTGGAG 6 cut(s) 157, 404, 442, 682, 824, 1196
Bpu14I TTCGAA 1 cut(s) 1163
BpuMI CCSGG 3 cut(s) 493, 601, 910
BsaBI GATNNNNATC 2 cut(s) 608, 1140
BsaHI GRCGYC 7 cut(s) 42, 369, 480, 531, 827, 948, 1206
BsaI GGTCTC 1 cut(s) 773
BsaJI CCNNGG 7 cut(s) 363, 475, 628, 649, 714, 783, 909
BsaWI WCCGGW 2 cut(s) 845, 1120
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 492, 789
Bse118I RCCGGY 2 cut(s) 527, 1151
Bse1I ACTGG 1 cut(s) 807
Bse8I GATNNNNATC 2 cut(s) 608, 1140
BseAI TCCGGA 1 cut(s) 1120
BseBI CCWGG 2 cut(s) 343, 785
BseDI CCNNGG 7 cut(s) 363, 475, 628, 649, 714, 783, 909
BseGI GGATG 3 cut(s) 396, 609, 1075
BseJI GATNNNNATC 2 cut(s) 608, 1140
BseLI CCNNNNNNNGG 3 cut(s) 342, 492, 789
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 807
BseSI GKGCMC 1 cut(s) 812
BseX3I CGGCCG 1 cut(s) 1130
BseXI GCAGC 1 cut(s) 335
BsgI GTGCAG 2 cut(s) 76, 1109
Bsh1236I CGCG 3 cut(s) 814, 816, 1240
Bsh1285I CGRYCG 2 cut(s) 794, 1133
BshFI GGCC 3 cut(s) 633, 660, 1132
BshNI GGYRCC 6 cut(s) 41, 479, 530, 737, 826, 947
BsiEI CGRYCG 2 cut(s) 794, 1133
BsiHKAI GWGCWC 3 cut(s) 74, 698, 735
BsiHKCI CYCGRG 1 cut(s) 568
BslFI GGGAC 4 cut(s) 113, 197, 1026, 1193
BslI CCNNNNNNNGG 3 cut(s) 342, 492, 789
BsmAI GTCTC 2 cut(s) 715, 773
BsmBI CGTCTC 1 cut(s) 715
BsmFI GGGAC 4 cut(s) 113, 197, 1026, 1193
BsnI GGCC 3 cut(s) 633, 660, 1132
Bso31I GGTCTC 1 cut(s) 773
BsoBI CYCGRG 1 cut(s) 568
Bsp119I TTCGAA 1 cut(s) 1163
Bsp1286I GDGCHC 6 cut(s) 74, 90, 98, 698, 735, 812
Bsp13I TCCGGA 1 cut(s) 1120
Bsp143I GATC 7 cut(s) 224, 276, 359, 609, 903, 1117, 1141
BspANI GGCC 3 cut(s) 633, 660, 1132
BspCNI CTCAG 1 cut(s) 234
BspEI TCCGGA 1 cut(s) 1120
BspFNI CGCG 3 cut(s) 814, 816, 1240
BspLI GGNNCC 9 cut(s) 43, 481, 532, 655, 739, 828, 918, 949, 1119
BspMI ACCTGC 1 cut(s) 1081
BspPI GGATC 6 cut(s) 219, 271, 354, 1112, 1125, 1149
BspT104I TTCGAA 1 cut(s) 1163
BspT107I GGYRCC 6 cut(s) 41, 479, 530, 737, 826, 947
BspTNI GGTCTC 1 cut(s) 773
BsrBI CCGCTC 1 cut(s) 282
BsrFI RCCGGY 2 cut(s) 527, 1151
BsrI ACTGG 1 cut(s) 807
BssAI RCCGGY 2 cut(s) 527, 1151
BssECI CCNNGG 7 cut(s) 363, 475, 628, 649, 714, 783, 909
BssMI GATC 7 cut(s) 224, 276, 359, 609, 903, 1117, 1141
BssNI GRCGYC 7 cut(s) 42, 369, 480, 531, 827, 948, 1206
BssSI CACGAG 1 cut(s) 728
BssT1I CCWWGG 1 cut(s) 363
Bst2BI CACGAG 1 cut(s) 728
Bst2UI CCWGG 2 cut(s) 343, 785
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 1 cut(s) 1107
BstACI GRCGYC 7 cut(s) 42, 369, 480, 531, 827, 948, 1206
BstBI TTCGAA 1 cut(s) 1163
BstC8I GCNNGC 6 cut(s) 37, 74, 78, 529, 535, 812
BstDEI CTNAG 1 cut(s) 221
BstDSI CCRYGG 2 cut(s) 628, 649
BstF5I GGATG 3 cut(s) 396, 609, 1075
BstFNI CGCG 3 cut(s) 814, 816, 1240
BstH2I RGCGCY 7 cut(s) 45, 349, 427, 483, 534, 830, 951
BstKTI GATC 7 cut(s) 227, 279, 362, 612, 906, 1120, 1144
BstMAI GTCTC 2 cut(s) 715, 773
BstMBI GATC 7 cut(s) 224, 276, 359, 609, 903, 1117, 1141
BstMCI CGRYCG 2 cut(s) 794, 1133
BstMWI GCNNNNNNNGC 8 cut(s) 14, 20, 41, 393, 539, 756, 954, 995
BstNI CCWGG 2 cut(s) 343, 785
BstNSI RCATGY 1 cut(s) 646
BstSCI CCNGG 5 cut(s) 341, 491, 599, 783, 908
BstSLI GKGCMC 1 cut(s) 812
BstUI CGCG 3 cut(s) 814, 816, 1240
BstV1I GCAGC 1 cut(s) 335
BstX2I RGATCY 3 cut(s) 224, 276, 1117
BstYI RGATCY 3 cut(s) 224, 276, 1117
BstZI CGGCCG 1 cut(s) 1130
BsuRI GGCC 3 cut(s) 633, 660, 1132
BtgI CCRYGG 2 cut(s) 628, 649
BtgZI GCGATG 1 cut(s) 882
BtrI CACGTC 1 cut(s) 1016
BtsCI GGATG 3 cut(s) 396, 609, 1075
BveI ACCTGC 1 cut(s) 1081
Cac8I GCNNGC 6 cut(s) 37, 74, 78, 529, 535, 812
Cfr10I RCCGGY 2 cut(s) 527, 1151
Cfr13I GGNCC 1 cut(s) 60
CseI GACGC 2 cut(s) 377, 1195
Csp6I GTAC 2 cut(s) 820, 928
CviAII CATG 2 cut(s) 643, 823
CviQI GTAC 2 cut(s) 820, 928
DdeI CTNAG 1 cut(s) 221
DinI GGCGCC 5 cut(s) 43, 481, 532, 828, 949
DpnI GATC 7 cut(s) 226, 278, 361, 611, 905, 1119, 1143
DpnII GATC 7 cut(s) 224, 276, 359, 609, 903, 1117, 1141
EaeI YGGCCR 1 cut(s) 1130
EagI CGGCCG 1 cut(s) 1130
Eam1104I CTCTTC 1 cut(s) 1107
EarI CTCTTC 1 cut(s) 1107
EciI GGCGGA 6 cut(s) 22, 274, 779, 929, 1091, 1208
Ecl136II GAGCTC 1 cut(s) 696
EclXI CGGCCG 1 cut(s) 1130
Eco130I CCWWGG 1 cut(s) 363
Eco24I GRGCYC 3 cut(s) 90, 98, 698
Eco31I GGTCTC 1 cut(s) 773
Eco47I GGWCC 1 cut(s) 60
Eco52I CGGCCG 1 cut(s) 1130
Eco53kI GAGCTC 1 cut(s) 696
Eco57I CTGAAG 2 cut(s) 944, 1070
Eco88I CYCGRG 1 cut(s) 568
EcoICRI GAGCTC 1 cut(s) 696
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 341, 783
EcoT14I CCWWGG 1 cut(s) 363
EcoT38I GRGCYC 3 cut(s) 90, 98, 698
EgeI GGCGCC 5 cut(s) 43, 481, 532, 828, 949
EheI GGCGCC 5 cut(s) 43, 481, 532, 828, 949
ErhI CCWWGG 1 cut(s) 363
Esp3I CGTCTC 1 cut(s) 715
FaeI CATG 2 cut(s) 646, 826
FaiI YATR 8 cut(s) 53, 576, 644, 824, 932, 963, 1139, 1185
FaqI GGGAC 4 cut(s) 113, 197, 1026, 1193
FatI CATG 2 cut(s) 642, 822
FauI CCCGC 3 cut(s) 401, 809, 1013
FblI GTMKAC 4 cut(s) 504, 513, 794, 873
FokI GGATG 3 cut(s) 383, 616, 1082
FriOI GRGCYC 3 cut(s) 90, 98, 698
GsuI CTGGAG 6 cut(s) 157, 404, 442, 682, 824, 1196
HaeII RGCGCY 7 cut(s) 45, 349, 427, 483, 534, 830, 951
HaeIII GGCC 3 cut(s) 633, 660, 1132
HgaI GACGC 2 cut(s) 377, 1195
Hin1I GRCGYC 7 cut(s) 42, 369, 480, 531, 827, 948, 1206
Hin1II CATG 2 cut(s) 646, 826
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HinfI GANTC 5 cut(s) 665, 849, 983, 1055, 1178
HphI GGTGA 4 cut(s) 835, 982, 1012, 1036
Hpy166II GTNNAC 5 cut(s) 505, 514, 679, 795, 874
Hpy188I TCNGA 4 cut(s) 224, 274, 715, 1065
Hpy188III TCNNGA 4 cut(s) 691, 853, 1121, 1175
Hpy8I GTNNAC 5 cut(s) 505, 514, 679, 795, 874
Hpy99I CGWCG 2 cut(s) 527, 592
HpyAV CCTTC 5 cut(s) 151, 238, 365, 682, 1045
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 2 cut(s) 501, 1015
HpyCH4V TGCA 4 cut(s) 57, 607, 646, 1090
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 20, 41, 393, 539, 756, 954, 995
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 2 cut(s) 501, 1015
Hsp92I GRCGYC 7 cut(s) 42, 369, 480, 531, 827, 948, 1206
Hsp92II CATG 2 cut(s) 646, 826
KasI GGCGCC 5 cut(s) 41, 479, 530, 826, 947
Kpn2I TCCGGA 1 cut(s) 1120
KroI GCCGGC 1 cut(s) 527
KroNI GCCGGC 1 cut(s) 529
Kzo9I GATC 7 cut(s) 224, 276, 359, 609, 903, 1117, 1141
LmnI GCTCC 7 cut(s) 287, 356, 477, 495, 659, 701, 898
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 3 cut(s) 405, 594, 711
MaeII ACGT 2 cut(s) 501, 1015
MaeIII GTNAC 1 cut(s) 853
MalI GATC 7 cut(s) 226, 278, 361, 611, 905, 1119, 1143
MbiI CCGCTC 1 cut(s) 282
MboI GATC 7 cut(s) 224, 276, 359, 609, 903, 1117, 1141
MboII GAAGA 4 cut(s) 370, 574, 1124, 1210
MflI RGATCY 3 cut(s) 224, 276, 1117
MhlI GDGCHC 6 cut(s) 74, 90, 98, 698, 735, 812
MluCI AATT 1 cut(s) 518
Mly113I GGCGCC 5 cut(s) 42, 480, 531, 827, 948
MlyI GAGTC 4 cut(s) 659, 992, 1049, 1187
MmeI TCCRAC 1 cut(s) 1080
MreI CGCCGGCG 1 cut(s) 527
MroI TCCGGA 1 cut(s) 1120
MroNI GCCGGC 1 cut(s) 527
MspA1I CMGCKG 3 cut(s) 14, 39, 922
MspR9I CCNGG 5 cut(s) 343, 493, 601, 785, 910
MvaI CCWGG 2 cut(s) 343, 785
MvnI CGCG 3 cut(s) 814, 816, 1240
MwoI GCNNNNNNNGC 8 cut(s) 14, 20, 41, 393, 539, 756, 954, 995
NaeI GCCGGC 1 cut(s) 529
NarI GGCGCC 5 cut(s) 42, 480, 531, 827, 948
NciI CCSGG 3 cut(s) 493, 601, 910
NdeII GATC 7 cut(s) 224, 276, 359, 609, 903, 1117, 1141
NgoMIV GCCGGC 1 cut(s) 527
NlaIII CATG 2 cut(s) 646, 826
NlaIV GGNNCC 9 cut(s) 43, 481, 532, 655, 739, 828, 918, 949, 1119
NmeAIII GCCGAG 1 cut(s) 456
NmuCI GTSAC 1 cut(s) 853
NspI RCATGY 1 cut(s) 646
NspV TTCGAA 1 cut(s) 1163
PaqCI CACCTGC 1 cut(s) 1081
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 507
PdiI GCCGGC 1 cut(s) 529
PfeI GAWTC 1 cut(s) 849
PflFI GACNNNGTC 1 cut(s) 371
PfoI TCCNGGA 2 cut(s) 491, 599
PleI GAGTC 4 cut(s) 659, 991, 1049, 1186
PluTI GGCGCC 5 cut(s) 45, 483, 534, 830, 951
PpsI GAGTC 4 cut(s) 659, 991, 1049, 1186
Psp124BI GAGCTC 1 cut(s) 698
Psp6I CCWGG 2 cut(s) 341, 783
PspGI CCWGG 2 cut(s) 341, 783
PspN4I GGNNCC 9 cut(s) 43, 481, 532, 655, 739, 828, 918, 949, 1119
PspPI GGNCC 1 cut(s) 60
PsuI RGATCY 3 cut(s) 224, 276, 1117
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 2 cut(s) 821, 929
RsaNI GTAC 2 cut(s) 820, 928
SacI GAGCTC 1 cut(s) 698
SalI GTCGAC 1 cut(s) 793
Sau3AI GATC 7 cut(s) 224, 276, 359, 609, 903, 1117, 1141
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 4 cut(s) 659, 992, 1049, 1187
ScrFI CCNGG 5 cut(s) 343, 493, 601, 785, 910
SduI GDGCHC 6 cut(s) 74, 90, 98, 698, 735, 812
SfaNI GCATC 3 cut(s) 405, 594, 711
SfoI GGCGCC 5 cut(s) 43, 481, 532, 828, 949
SfuI TTCGAA 1 cut(s) 1163
SgrAI CRCCGGYG 1 cut(s) 527
SinI GGWCC 1 cut(s) 60
Sse9I AATT 1 cut(s) 518
SspDI GGCGCC 5 cut(s) 41, 479, 530, 826, 947
SstI GAGCTC 1 cut(s) 698
StyD4I CCNGG 5 cut(s) 341, 491, 599, 783, 908
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 2 cut(s) 504, 1018
TaqI TCGA 7 cut(s) 293, 358, 636, 663, 794, 1163, 1215
TaqII GACCGA 1 cut(s) 780
TasI AATT 1 cut(s) 518
TatI WGTACW 1 cut(s) 927
TauI GCSGC 8 cut(s) 11, 14, 42, 47, 315, 429, 777, 1132
TfiI GAWTC 1 cut(s) 849
TseFI GTSAC 1 cut(s) 853
TseI GCWGC 2 cut(s) 14, 348
Tsp45I GTSAC 1 cut(s) 853
TspDTI ATGAA 1 cut(s) 1218
TspGWI ACGGA 1 cut(s) 199
Tth111I GACNNNGTC 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 1 cut(s) 518
XceI RCATGY 1 cut(s) 646
XmiI GTMKAC 4 cut(s) 504, 513, 794, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.