Rh5BG391800

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0013449
Physical Location & Seq
Forward (+)
62648164 .. 62652648
4485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG391800.1

Sequence Viewer

Length: 1266 bp
ATGTCTAGCCCAAGAAGCTTGTCTGTTCGCACACCATCTGAGATTAGAAAGAAGAAGGTCGGTGGGCAGAAAAACCAAGAGGAGCTTGAAAGAGAGGTCTCTTTGCTTCAAAGACTGTTAAATCAAGAAGAGAAAGTACATGAGGTTTTGGACTATGCCTTCAGTCGGAAAACTTCCGAGTCTGCTTCTGCTATTCGAATTCCAAGATTCCTTCCCCAGAAGACGAAGGAACTTTTAGCAGAGTTGGCTATGGTTGAAGGAGAAATTTCTCGACTTGAAGACCAAATCAGACAACTTAAACTAGGACTGCAACAGGAAGAACAAGCTACTAAGGAATCAAAGGCTCGACAATGGCAACATGATGAAAACCTAAGCCTTATGAACAGAGGTGTTCATCATGAGAGAAAAGGATATGAAACCAAGGCATTGCATTTCATAAGTAAAGCTATAAAGGGTGATTATGAACTTAATAATGAACTCAATTTAAATGAGAAAATGGAAAACTTGAGAAGTTTTTCTGATCAGAAAGAAAATTACTTCTATGAGGAGGTTAGACTTCAGTCTATGGTTCCACGAAAAGGTGGATTGTTAAGAGCACCCTCACCCTTGCGAACTCTGAGACATCCATCAGCACCAAAGATGAGAGAAGTTAAACCAGGCATTTCTTCAGATCATCTCCCACCAAAACCTGTACCAATTCCAACACAATTAGAAGAGAACAACCATATTTGGCAACCAAACAAGCTCTCAGAGGAAATTTTGAAGTGTCTCAACCTCATTTATGTTAGGCTGCTTAGAACAACCAGAACAATGGAATTGGAGAAATCAGGCCCCATTTCCAGGTCTTTGCACTCTTCTGTTGTAACCTCAAGGAGCTTCAGGGATGATACCAGCCTAACCTCCAAGTCAAGCCTTCTGTTACAGAAGGAATCAAGGCAACAAGACCCTTATGGTATCTTCAATGTGGAAGACTCTATTCCTAGGGATATTGGCCCTTACAAGAACTTGGTTGTTTTTACCTCAAATTCTATGGACCCAAGATCTATTTCAGCATCGAACTCTATTCCTTTACTAAAAAAGTTGAGGGTATTGCTGAACAATCTCCTGGTTGTGAATTTGGGGTCCTTGGCATACCAGCAGAAGTTAGCATTCTGGATCAACATGTACAATGCTTGTATCATGAATGGCTTTCTCGAATTTGGTGCGCATCCTTCCGCAGACAGATTACTTACATTACTGAACAAGGTAAGTCCAAACTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

421

Amino Acids

48.37

Weight (kDa)

9.46

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 23 - 106 1.8e-20 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 375 - 415 3.8e-08 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60720
fragaria_vesca FvH4_3g31550 FvH4_3g31550
malus_domestica MD03G1123800.v1.1 MD11G1140800.v1.1
prunus_persica Prupe.6G106400_v2.0.a1
pyrus_communis pycom11g11670
rosa_chinensis RchiOBHm_Chr5g0058191
rosa_laevigata RLG00000035202
rosa_multiflora Rmu_sc0000367.1_g000041
rosa_roxburghii Rroxscaffold_1G00022340
rosa_rugosa Rorug05G0312700 Rorug05G0312700
rosa_samantha Rh5AG380500 Rh5BG391800 Rh5CG415700 Rh5DG406300
rosa_wichuraiana Rw5G035830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1206
AciI CCGC 1 cut(s) 1215
AclWI GGATC 1 cut(s) 1163
AcsI RAATTY 6 cut(s) 198, 264, 756, 1024, 1114, 1196
AcuI CTGAAG 4 cut(s) 145, 542, 651, 862
AfaI GTAC 3 cut(s) 138, 693, 1166
AfiI CCNNNNNNNGG 3 cut(s) 165, 578, 840
AflIII ACRYGT 1 cut(s) 1161
AgsI TTSAA 6 cut(s) 89, 110, 257, 278, 763, 961
AjnI CCWGG 3 cut(s) 655, 839, 1104
AjuI GAANNNNNNNTTGG 2 cut(s) 1030, 1062
AluBI AGCT 6 cut(s) 18, 85, 326, 446, 745, 876
AluI AGCT 6 cut(s) 18, 85, 326, 446, 745, 876
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 3 cut(s) 103, 613, 773
AlwI GGATC 1 cut(s) 1163
AoxI GGCC 2 cut(s) 829, 991
ApeKI GCWGC 1 cut(s) 790
ApoI RAATTY 6 cut(s) 198, 264, 756, 1024, 1114, 1196
Asp700I GAANNNNTTC 1 cut(s) 514
AspA2I CCTAGG 1 cut(s) 980
AspLEI GCGC 1 cut(s) 1207
AspS9I GGNCC 4 cut(s) 830, 992, 1033, 1122
AsuHPI GGTGA 2 cut(s) 467, 594
AsuII TTCGAA 1 cut(s) 196
AvaII GGWCC 2 cut(s) 1033, 1122
AvrII CCTAGG 1 cut(s) 980
BarI GAAGNNNNNNTAC 2 cut(s) 120, 152
BbsI GAAGAC 3 cut(s) 227, 285, 975
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 1 cut(s) 777
BccI CCATC 2 cut(s) 43, 634
BcgI CGANNNNNNTGC 2 cut(s) 1184, 1218
BciT130I CCWGG 3 cut(s) 657, 841, 1106
BclI TGATCA 1 cut(s) 520
BcoDI GTCTC 3 cut(s) 103, 613, 773
BfaI CTAG 3 cut(s) 6, 302, 981
BglII AGATCT 1 cut(s) 1040
BisI GCNGC 1 cut(s) 791
BlnI CCTAGG 1 cut(s) 980
BlsI GCNGC 1 cut(s) 792
Bme1390I CCNGG 3 cut(s) 657, 841, 1106
Bme18I GGWCC 2 cut(s) 1033, 1122
BmgT120I GGNCC 4 cut(s) 830, 992, 1033, 1122
BmiI GGNNCC 4 cut(s) 570, 832, 1035, 1123
BmrFI CCNGG 3 cut(s) 657, 841, 1106
BmsI GCATC 2 cut(s) 1061, 1216
BoxI GACNNNNGTC 1 cut(s) 559
BpiI GAAGAC 3 cut(s) 227, 285, 975
Bpu10I CCTNAGC 1 cut(s) 371
Bpu14I TTCGAA 1 cut(s) 196
BpuEI CTTGAG 2 cut(s) 526, 853
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 420, 980, 1125
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 578, 840
Bse3DI GCAATG 1 cut(s) 425
BseBI CCWGG 3 cut(s) 657, 841, 1106
BseDI CCNNGG 3 cut(s) 420, 980, 1125
BseGI GGATG 3 cut(s) 622, 889, 1207
BseLI CCNNNNNNNGG 3 cut(s) 165, 578, 840
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 3 cut(s) 30, 608, 762
BseRI GAGGAG 2 cut(s) 95, 560
BseXI GCAGC 1 cut(s) 777
BshFI GGCC 2 cut(s) 831, 993
BsiHKAI GWGCWC 1 cut(s) 598
BslI CCNNNNNNNGG 3 cut(s) 165, 578, 840
BsmAI GTCTC 3 cut(s) 103, 613, 773
BsmI GAATGC 1 cut(s) 1148
BsnI GGCC 2 cut(s) 831, 993
Bso31I GGTCTC 1 cut(s) 103
Bsp119I TTCGAA 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 598
Bsp1407I TGTACA 1 cut(s) 1164
Bsp143I GATC 4 cut(s) 520, 670, 1040, 1155
BspACI CCGC 1 cut(s) 1215
BspANI GGCC 2 cut(s) 831, 993
BspCNI CTCAG 3 cut(s) 31, 609, 761
BspHI TCATGA 2 cut(s) 397, 1179
BspLI GGNNCC 4 cut(s) 570, 832, 1035, 1123
BspPI GGATC 1 cut(s) 1163
BspT104I TTCGAA 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 425
BsrGI TGTACA 1 cut(s) 1164
BssECI CCNNGG 3 cut(s) 420, 980, 1125
BssMI GATC 4 cut(s) 520, 670, 1040, 1155
BssT1I CCWWGG 3 cut(s) 420, 980, 1125
Bst2UI CCWGG 3 cut(s) 657, 841, 1106
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 3 cut(s) 123, 708, 859
BstAUI TGTACA 1 cut(s) 1164
BstBI TTCGAA 1 cut(s) 196
BstDEI CTNAG 6 cut(s) 39, 330, 371, 617, 748, 794
BstF5I GGATG 3 cut(s) 622, 889, 1207
BstHHI GCGC 1 cut(s) 1207
BstKTI GATC 4 cut(s) 523, 673, 1043, 1158
BstMAI GTCTC 3 cut(s) 103, 613, 773
BstMBI GATC 4 cut(s) 520, 670, 1040, 1155
BstMWI GCNNNNNNNGC 2 cut(s) 15, 245
BstNI CCWGG 3 cut(s) 657, 841, 1106
BstNSI RCATGY 1 cut(s) 1165
BstPAI GACNNNNGTC 1 cut(s) 559
BstSCI CCNGG 3 cut(s) 655, 839, 1104
BstV1I GCAGC 1 cut(s) 777
BstV2I GAAGAC 3 cut(s) 227, 285, 975
BstX2I RGATCY 1 cut(s) 1040
BstXI CCANNNNNNTGG 1 cut(s) 811
BstYI RGATCY 1 cut(s) 1040
BsuRI GGCC 2 cut(s) 831, 993
BtsCI GGATG 3 cut(s) 622, 889, 1207
CciI TCATGA 2 cut(s) 397, 1179
CfoI GCGC 1 cut(s) 1207
Cfr13I GGNCC 4 cut(s) 830, 992, 1033, 1122
Csp6I GTAC 3 cut(s) 137, 692, 1165
CviAII CATG 5 cut(s) 140, 359, 398, 1162, 1180
CviQI GTAC 3 cut(s) 137, 692, 1165
DdeI CTNAG 6 cut(s) 39, 330, 371, 617, 748, 794
DpnI GATC 4 cut(s) 522, 672, 1042, 1157
DpnII GATC 4 cut(s) 520, 670, 1040, 1155
DraI TTTAAA 1 cut(s) 486
Eam1104I CTCTTC 3 cut(s) 123, 708, 859
EarI CTCTTC 3 cut(s) 123, 708, 859
Eco130I CCWWGG 3 cut(s) 420, 980, 1125
Eco31I GGTCTC 1 cut(s) 103
Eco47I GGWCC 2 cut(s) 1033, 1122
Eco57I CTGAAG 4 cut(s) 145, 542, 651, 862
EcoO109I RGGNCCY 2 cut(s) 830, 1122
EcoRI GAATTC 1 cut(s) 198
EcoRII CCWGG 3 cut(s) 655, 839, 1104
EcoT14I CCWWGG 3 cut(s) 420, 980, 1125
ErhI CCWWGG 3 cut(s) 420, 980, 1125
FaeI CATG 5 cut(s) 143, 362, 401, 1165, 1183
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 5 cut(s) 139, 358, 397, 1161, 1179
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 791
FokI GGATG 3 cut(s) 609, 896, 1194
Fsp4HI GCNGC 1 cut(s) 791
FspAI RTGCGCAY 1 cut(s) 1206
FspBI CTAG 3 cut(s) 6, 302, 981
FspI TGCGCA 1 cut(s) 1206
GlaI GCGC 1 cut(s) 1206
GluI GCNGC 1 cut(s) 791
HaeIII GGCC 2 cut(s) 831, 993
HhaI GCGC 1 cut(s) 1207
Hin1II CATG 5 cut(s) 143, 362, 401, 1165, 1183
Hin6I GCGC 1 cut(s) 1205
HinP1I GCGC 1 cut(s) 1205
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 5 cut(s) 179, 207, 335, 929, 971
HphI GGTGA 2 cut(s) 467, 594
Hpy188I TCNGA 9 cut(s) 40, 168, 178, 290, 520, 525, 618, 670, 751
Hpy188III TCNNGA 6 cut(s) 125, 270, 398, 1153, 1180, 1193
HpyAV CCTTC 8 cut(s) 49, 169, 220, 221, 251, 919, 923, 1221
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 310, 430, 850
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 245
HpyF3I CTNAG 6 cut(s) 39, 330, 371, 617, 748, 794
Hsp92II CATG 5 cut(s) 143, 362, 401, 1165, 1183
HspAI GCGC 1 cut(s) 1205
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 4 cut(s) 520, 670, 1040, 1155
LmnI GCTCC 2 cut(s) 82, 873
Lsp1109I GCAGC 1 cut(s) 777
LweI GCATC 2 cut(s) 1061, 1216
MaeI CTAG 3 cut(s) 6, 302, 981
MaeIII GTNAC 2 cut(s) 862, 918
MalI GATC 4 cut(s) 522, 672, 1042, 1157
MboI GATC 4 cut(s) 520, 670, 1040, 1155
MflI RGATCY 1 cut(s) 1040
MhlI GDGCHC 1 cut(s) 598
MlyI GAGTC 2 cut(s) 188, 965
MmeI TCCRAC 2 cut(s) 146, 725
MroXI GAANNNNTTC 1 cut(s) 514
MseI TTAA 6 cut(s) 119, 297, 468, 485, 590, 651
MspR9I CCNGG 3 cut(s) 657, 841, 1106
Mva1269I GAATGC 1 cut(s) 1148
MvaI CCWGG 3 cut(s) 657, 841, 1106
MwoI GCNNNNNNNGC 2 cut(s) 15, 245
NdeII GATC 4 cut(s) 520, 670, 1040, 1155
NlaIII CATG 5 cut(s) 143, 362, 401, 1165, 1183
NlaIV GGNNCC 4 cut(s) 570, 832, 1035, 1123
NsbI TGCGCA 1 cut(s) 1206
NspI RCATGY 1 cut(s) 1165
NspV TTCGAA 1 cut(s) 196
PagI TCATGA 2 cut(s) 397, 1179
PciI ACATGT 1 cut(s) 1161
PctI GAATGC 1 cut(s) 1148
PdmI GAANNNNTTC 1 cut(s) 514
PfeI GAWTC 3 cut(s) 207, 335, 929
PkrI GCNGC 1 cut(s) 792
PleI GAGTC 2 cut(s) 187, 965
PpsI GAGTC 2 cut(s) 187, 965
PpuMI RGGWCCY 1 cut(s) 1122
PscI ACATGT 1 cut(s) 1161
PshAI GACNNNNGTC 1 cut(s) 559
Psp5II RGGWCCY 1 cut(s) 1122
Psp6I CCWGG 3 cut(s) 655, 839, 1104
PspGI CCWGG 3 cut(s) 655, 839, 1104
PspN4I GGNNCC 4 cut(s) 570, 832, 1035, 1123
PspPI GGNCC 4 cut(s) 830, 992, 1033, 1122
PspPPI RGGWCCY 1 cut(s) 1122
PsuI RGATCY 1 cut(s) 1040
RsaI GTAC 3 cut(s) 138, 693, 1166
RsaNI GTAC 3 cut(s) 137, 692, 1165
SaqAI TTAA 6 cut(s) 119, 297, 468, 485, 590, 651
SatI GCNGC 1 cut(s) 791
Sau3AI GATC 4 cut(s) 520, 670, 1040, 1155
Sau96I GGNCC 4 cut(s) 830, 992, 1033, 1122
SchI GAGTC 2 cut(s) 188, 965
ScrFI CCNGG 3 cut(s) 657, 841, 1106
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 2 cut(s) 1061, 1216
SfuI TTCGAA 1 cut(s) 196
SinI GGWCC 2 cut(s) 1033, 1122
SmiI ATTTAAAT 1 cut(s) 486
SmlI CTYRAG 2 cut(s) 505, 868
SmoI CTYRAG 2 cut(s) 505, 868
SsiI CCGC 1 cut(s) 1215
SspMI CTAG 3 cut(s) 6, 302, 981
StyD4I CCNGG 3 cut(s) 655, 839, 1104
StyI CCWWGG 3 cut(s) 420, 980, 1125
SwaI ATTTAAAT 1 cut(s) 486
TaaI ACNGT 1 cut(s) 117
TaqI TCGA 5 cut(s) 196, 271, 346, 1055, 1194
TatI WGTACW 2 cut(s) 136, 1164
TfiI GAWTC 3 cut(s) 207, 335, 929
Tru1I TTAA 6 cut(s) 119, 297, 468, 485, 590, 651
Tru9I TTAA 6 cut(s) 119, 297, 468, 485, 590, 651
TseI GCWGC 1 cut(s) 790
TspDTI ATGAA 8 cut(s) 378, 383, 395, 424, 429, 477, 489, 1196
VpaK11BI GGWCC 2 cut(s) 1033, 1122
XapI RAATTY 6 cut(s) 198, 264, 756, 1024, 1114, 1196
XceI RCATGY 1 cut(s) 1165
XmaJI CCTAGG 1 cut(s) 980
XmnI GAANNNNTTC 1 cut(s) 514
XspI CTAG 3 cut(s) 6, 302, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.