Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0022553

Physical Location & Seq

Genomic Coordinates Forward (+)

11403654 .. 11404196

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCTCAACGTGGCCGCGACCGAGGCCGAGGTCGCCATTCGGACCCCTCGCACGCCTCCTACGCCCCGTCGTTTAATCATGGTGGAGGTGGCAACGAACGTGGATCACCGAGAGAGGCGAGGTCTCAAAGTAGCCGTCAATGGTGGACTAACTACGCCACCATAATCACCGGTGCACCACAGACGTCATTTCGATTCGCAAAGGGGCCTAGCCAGCGCAGGCCAGAAGGAATGGGTGGTTATTGTGGTGTGGTTACACCAACAACAACACCAACACCGGAGCCTAGGACAAATAATCCTCTCGAACTGGTGCCGGCTCAGGCTTCGTCCAGTTTTACTCCTCCGGATGCAGAGGCACCGCTGATATGTGAGATGGAGAAGAAGCTAACATTAACTGCTCTGACACCAGCGTCATCCAAGGCCATTAGGTTTTCGCCAAGGCCGGGTTTCAGAACTCTTGGGGAGAAGATTCAAGTGAGGGCCAACCACTTCTTAGTGGAGGTTGCGGACAGGGATCTCCATCACTACGATGTAAGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

181

Amino Acids

19.71

Weight (kDa)

9.92

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022553)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g12480
rosa_samantha	Rh5BG378400 Rh5BG379000 Rh7BG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	409
AatII	GACGTC	1 cut(s)	188
AccB1I	GGYRCC	2 cut(s)	310, 355
AccII	CGCG	1 cut(s)	18
AccIII	TCCGGA	1 cut(s)	343
AciI	CCGC	3 cut(s)	16, 359, 506
AclWI	GGATC	2 cut(s)	112, 522
AcoI	YGGCCR	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	473
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	2 cut(s)	9, 129
Alw44I	GTGCAC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	112, 522
Aor13HI	TCCGGA	1 cut(s)	343
AoxI	GGCC	7 cut(s)	13, 25, 206, 221, 420, 440, 480
ApaLI	GTGCAC	1 cut(s)	174
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
AsiGI	ACCGGT	1 cut(s)	170
AspA2I	CCTAGG	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	219
AspS9I	GGNCC	3 cut(s)	43, 206, 480
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	2 cut(s)	99, 160
AvaII	GGWCC	1 cut(s)	43
AvrII	CCTAGG	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	178
BanI	GGYRCC	2 cut(s)	310, 355
Bbv12I	GWGCWC	1 cut(s)	178
BccI	CCATC	2 cut(s)	367, 528
BceAI	ACGGC	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	9, 129
BfaI	CTAG	2 cut(s)	210, 285
BisI	GCNGC	1 cut(s)	16
BlnI	CCTAGG	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	43, 206, 480
BmiI	GGNNCC	5 cut(s)	45, 207, 282, 312, 357
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	5 cut(s)	22, 28, 284, 417, 437
BsaWI	WCCGGW	3 cut(s)	170, 277, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse118I	RCCGGY	2 cut(s)	170, 313
Bse1I	ACTGG	2 cut(s)	312, 330
Bse8I	GATNNNNATC	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	343
BseDI	CCNNGG	5 cut(s)	22, 28, 284, 417, 437
BseGI	GGATG	2 cut(s)	352, 413
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	312, 330
BseRI	GAGGAG	1 cut(s)	330
BseSI	GKGCMC	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	18
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	7 cut(s)	15, 27, 208, 223, 422, 442, 482
BshNI	GGYRCC	2 cut(s)	310, 355
BshTI	ACCGGT	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	5 cut(s)	171, 278, 314, 344, 443
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmAI	GTCTC	2 cut(s)	9, 129
BsnI	GGCC	7 cut(s)	15, 27, 208, 223, 422, 442, 482
Bso31I	GGTCTC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp13I	TCCGGA	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	104, 514
BspACI	CCGC	3 cut(s)	16, 359, 506
BspANI	GGCC	7 cut(s)	15, 27, 208, 223, 422, 442, 482
BspCNI	CTCAG	1 cut(s)	331
BspEI	TCCGGA	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	5 cut(s)	45, 207, 282, 312, 357
BspPI	GGATC	2 cut(s)	112, 522
BspT107I	GGYRCC	2 cut(s)	310, 355
BspTNI	GGTCTC	1 cut(s)	129
BsrFI	RCCGGY	2 cut(s)	170, 313
BsrI	ACTGG	2 cut(s)	312, 330
BssAI	RCCGGY	2 cut(s)	170, 313
BssECI	CCNNGG	5 cut(s)	22, 28, 284, 417, 437
BssMI	GATC	2 cut(s)	104, 514
BssNI	GRCGYC	1 cut(s)	185
BssT1I	CCWWGG	3 cut(s)	284, 417, 437
BstACI	GRCGYC	1 cut(s)	185
BstC8I	GCNNGC	4 cut(s)	54, 215, 221, 315
BstDEI	CTNAG	2 cut(s)	318, 493
BstF5I	GGATG	2 cut(s)	352, 413
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	219
BstKTI	GATC	2 cut(s)	107, 517
BstMAI	GTCTC	2 cut(s)	9, 129
BstMBI	GATC	2 cut(s)	104, 514
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 33, 62, 214
BstSCI	CCNGG	1 cut(s)	442
BstSLI	GKGCMC	1 cut(s)	178
BstUI	CGCG	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	7 cut(s)	15, 27, 208, 223, 422, 442, 482
BtsCI	GGATG	2 cut(s)	352, 413
Cac8I	GCNNGC	4 cut(s)	54, 215, 221, 315
CfoI	GCGC	1 cut(s)	219
Cfr10I	RCCGGY	2 cut(s)	170, 313
Cfr13I	GGNCC	3 cut(s)	43, 206, 480
CseI	GACGC	1 cut(s)	399
CspAI	ACCGGT	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	1 cut(s)	80
DdeI	CTNAG	2 cut(s)	318, 493
DpnI	GATC	2 cut(s)	106, 516
DpnII	GATC	2 cut(s)	104, 514
DrdI	GACNNNNNNGTC	1 cut(s)	409
DseDI	GACNNNNNNGTC	1 cut(s)	409
EaeI	YGGCCR	1 cut(s)	13
Eco130I	CCWWGG	3 cut(s)	284, 417, 437
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	206
EcoT14I	CCWWGG	3 cut(s)	284, 417, 437
ErhI	CCWWGG	3 cut(s)	284, 417, 437
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	81, 164, 367
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	16
FokI	GGATG	2 cut(s)	359, 400
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	2 cut(s)	210, 285
GlaI	GCGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	16
HaeIII	GGCC	7 cut(s)	15, 27, 208, 223, 422, 442, 482
HapII	CCGG	5 cut(s)	171, 278, 314, 344, 443
HgaI	GACGC	1 cut(s)	399
HhaI	GCGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	1 cut(s)	217
HinP1I	GCGC	1 cut(s)	217
HinfI	GANTC	2 cut(s)	195, 469
HpaII	CCGG	5 cut(s)	171, 278, 314, 344, 443
HphI	GGTGA	2 cut(s)	99, 160
Hpy166II	GTNNAC	2 cut(s)	147, 176
Hpy188I	TCNGA	3 cut(s)	43, 402, 452
Hpy188III	TCNNGA	2 cut(s)	302, 344
Hpy8I	GTNNAC	2 cut(s)	147, 176
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	221
HpyCH4IV	ACGT	3 cut(s)	10, 100, 185
HpyCH4V	TGCA	2 cut(s)	176, 350
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 33, 62, 214
HpyF3I	CTNAG	2 cut(s)	318, 493
HpySE526I	ACGT	3 cut(s)	10, 100, 185
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	1 cut(s)	217
Kpn2I	TCCGGA	1 cut(s)	343
KroI	GCCGGC	1 cut(s)	313
KroNI	GCCGGC	1 cut(s)	315
Kzo9I	GATC	2 cut(s)	104, 514
LmnI	GCTCC	1 cut(s)	280
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	2 cut(s)	210, 285
MaeII	ACGT	3 cut(s)	10, 100, 185
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	2 cut(s)	106, 516
MboI	GATC	2 cut(s)	104, 514
MboII	GAAGA	2 cut(s)	391, 478
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	1 cut(s)	538
MroI	TCCGGA	1 cut(s)	343
MroNI	GCCGGC	1 cut(s)	313
MseI	TTAA	3 cut(s)	75, 392, 541
MslI	CAYNNNNRTG	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	5 cut(s)	171, 278, 314, 344, 443
MspR9I	CCNGG	1 cut(s)	444
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	4 cut(s)	24, 33, 62, 214
NaeI	GCCGGC	1 cut(s)	315
NciI	CCSGG	1 cut(s)	444
NdeII	GATC	2 cut(s)	104, 514
NgoMIV	GCCGGC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	5 cut(s)	45, 207, 282, 312, 357
NmeAIII	GCCGAG	1 cut(s)	53
PdiI	GCCGGC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	195, 469
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	17
PspN4I	GGNNCC	5 cut(s)	45, 207, 282, 312, 357
PspPI	GGNCC	3 cut(s)	43, 206, 480
PsuI	RGATCY	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	3 cut(s)	75, 392, 541
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	2 cut(s)	104, 514
Sau96I	GGNCC	3 cut(s)	43, 206, 480
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	9 cut(s)	13, 34, 91, 103, 125, 188, 387, 431, 504
SfaNI	GCATC	1 cut(s)	337
SgrAI	CRCCGGYG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	528
Sse9I	AATT	1 cut(s)	538
SsiI	CCGC	3 cut(s)	16, 359, 506
SspMI	CTAG	2 cut(s)	210, 285
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	3 cut(s)	284, 417, 437
TaiI	ACGT	3 cut(s)	13, 103, 188
TaqI	TCGA	2 cut(s)	193, 303
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	538
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	195, 469
Tru1I	TTAA	3 cut(s)	75, 392, 541
Tru9I	TTAA	3 cut(s)	75, 392, 541
VneI	GTGCAC	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	43
XmaJI	CCTAGG	1 cut(s)	284
XspI	CTAG	2 cut(s)	210, 285
ZraI	GACGTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.