Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0022553

Physical Location & Seq

Genomic Coordinates Reverse (-)

59994801 .. 60001611

Gene Structure 6811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG379000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCCGGACGCGGCAGCCGAGGCCGGCATTATTCCGGCGGTCGCTCTAATCCCTCGCACGCCGGAGGCGGCAGAGGAAGTTTCAGCGGCGGAGGAAGTTCAGGCGCCGCAGCTCCAGCGCCGACTCAAACTCGAGCTTATTCTCCACCGGCGGCCTCGTCAAGCTCGGCTCCGGTGGCTTCGCTGAGTAGCGAGATGGAGCAGAAGCTGACACTGGAGACGACGACGACGACGGCCGTGGCTGCTGTGCCGCCGGCGTCGTCGAAGGCGGTGAGGTTTCCGCAGAGGCCGGGGTTCGGGACGGTCGAAAGTTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009814 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0019222 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0098542 GO:0098586

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

106

Amino Acids

10.44

Weight (kDa)

11.27

Isoelectric Point (pI)

73.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022553)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g12480
rosa_samantha	Rh5BG378400 Rh5BG379000 Rh7BG249500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	234
AcyI	GRCGYC	2 cut(s)	105, 257
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	315
AluBI	AGCT	4 cut(s)	113, 137, 165, 208
AluI	AGCT	4 cut(s)	113, 137, 165, 208
Alw26I	GTCTC	1 cut(s)	212
AlwNI	CAGNNNCTG	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	132
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	4 cut(s)	22, 153, 234, 287
ApeKI	GCWGC	3 cut(s)	15, 110, 242
AspLEI	GCGC	2 cut(s)	107, 121
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	27, 122, 229
BccI	CCATC	1 cut(s)	190
BceAI	ACGGC	2 cut(s)	221, 249
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	212
BfoI	RGCGCY	2 cut(s)	108, 122
BisI	GCNGC	9 cut(s)	13, 16, 70, 88, 108, 111, 153, 243, 251
BlsI	GCNGC	9 cut(s)	14, 17, 71, 89, 109, 112, 154, 244, 252
Bme1390I	CCNGG	1 cut(s)	291
BmeT110I	CYCGRG	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	106, 171
BmrFI	CCNGG	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	99, 236
BpuMI	CCSGG	1 cut(s)	291
BsaHI	GRCGYC	2 cut(s)	105, 257
BsaJI	CCNNGG	3 cut(s)	19, 237, 290
BsaWI	WCCGGW	2 cut(s)	5, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse118I	RCCGGY	3 cut(s)	24, 148, 253
Bse1I	ACTGG	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	5
BseDI	CCNNGG	3 cut(s)	19, 237, 290
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	219
BseX3I	CGGCCG	1 cut(s)	234
BseXI	GCAGC	3 cut(s)	27, 122, 229
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	3 cut(s)	43, 237, 306
BshFI	GGCC	4 cut(s)	24, 155, 236, 289
BshNI	GGYRCC	1 cut(s)	104
BsiEI	CGRYCG	3 cut(s)	43, 237, 306
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	8 cut(s)	6, 25, 36, 63, 149, 173, 254, 290
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	212
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	4 cut(s)	24, 155, 236, 289
BsoBI	CYCGRG	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	5
BspANI	GGCC	4 cut(s)	24, 155, 236, 289
BspCNI	CTCAG	1 cut(s)	177
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	106, 171
BspT107I	GGYRCC	1 cut(s)	104
BsrFI	RCCGGY	3 cut(s)	24, 148, 253
BsrI	ACTGG	1 cut(s)	219
BssAI	RCCGGY	3 cut(s)	24, 148, 253
BssECI	CCNNGG	3 cut(s)	19, 237, 290
BssNI	GRCGYC	2 cut(s)	105, 257
Bst4CI	ACNGT	1 cut(s)	304
BstACI	GRCGYC	2 cut(s)	105, 257
BstC8I	GCNNGC	3 cut(s)	26, 60, 255
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	1 cut(s)	237
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	2 cut(s)	108, 122
BstHHI	GCGC	2 cut(s)	107, 121
BstMAI	GTCTC	1 cut(s)	212
BstMCI	CGRYCG	3 cut(s)	43, 237, 306
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 116, 176, 242
BstSCI	CCNGG	1 cut(s)	289
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	3 cut(s)	27, 122, 229
BstZI	CGGCCG	1 cut(s)	234
BsuRI	GGCC	4 cut(s)	24, 155, 236, 289
BtgI	CCRYGG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	212
Cac8I	GCNNGC	3 cut(s)	26, 60, 255
CaiI	CAGNNNCTG	1 cut(s)	208
CfoI	GCGC	2 cut(s)	107, 121
Cfr10I	RCCGGY	3 cut(s)	24, 148, 253
CseI	GACGC	2 cut(s)	18, 246
DdeI	CTNAG	1 cut(s)	185
DinI	GGCGCC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	234
EagI	CGGCCG	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	105
EclXI	CGGCCG	1 cut(s)	234
Eco52I	CGGCCG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	132
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	212
FaqI	GGGAC	1 cut(s)	313
Fnu4HI	GCNGC	9 cut(s)	13, 16, 70, 88, 108, 111, 153, 243, 251
Fsp4HI	GCNGC	9 cut(s)	13, 16, 70, 88, 108, 111, 153, 243, 251
GlaI	GCGC	2 cut(s)	106, 120
GluI	GCNGC	9 cut(s)	13, 16, 70, 88, 108, 111, 153, 243, 251
GsuI	CTGGAG	2 cut(s)	99, 236
HaeII	RGCGCY	2 cut(s)	108, 122
HaeIII	GGCC	4 cut(s)	24, 155, 236, 289
HapII	CCGG	8 cut(s)	6, 25, 36, 63, 149, 173, 254, 290
HgaI	GACGC	2 cut(s)	18, 246
HhaI	GCGC	2 cut(s)	107, 121
Hin1I	GRCGYC	2 cut(s)	105, 257
Hin6I	GCGC	2 cut(s)	105, 119
HinP1I	GCGC	2 cut(s)	105, 119
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	8 cut(s)	6, 25, 36, 63, 149, 173, 254, 290
HphI	GGTGA	1 cut(s)	283
Hpy188III	TCNNGA	2 cut(s)	6, 298
Hpy99I	CGWCG	6 cut(s)	226, 229, 232, 235, 262, 265
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 116, 176, 242
HpyF3I	CTNAG	1 cut(s)	185
Hsp92I	GRCGYC	2 cut(s)	105, 257
HspAI	GCGC	2 cut(s)	105, 119
KasI	GGCGCC	1 cut(s)	104
Kpn2I	TCCGGA	1 cut(s)	5
KroI	GCCGGC	2 cut(s)	24, 253
KroNI	GCCGGC	2 cut(s)	26, 255
LmnI	GCTCC	3 cut(s)	118, 175, 199
Lsp1109I	GCAGC	3 cut(s)	27, 122, 229
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	8 cut(s)	14, 59, 64, 68, 86, 166, 267, 279
MreI	CGCCGGCG	1 cut(s)	253
MroI	TCCGGA	1 cut(s)	5
MroNI	GCCGGC	2 cut(s)	24, 253
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	8 cut(s)	6, 25, 36, 63, 149, 173, 254, 290
MspR9I	CCNGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	4 cut(s)	21, 116, 176, 242
NaeI	GCCGGC	2 cut(s)	26, 255
NarI	GGCGCC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	291
NgoMIV	GCCGGC	2 cut(s)	24, 253
NlaIV	GGNNCC	2 cut(s)	106, 171
NmeAIII	GCCGAG	2 cut(s)	44, 146
PaeR7I	CTCGAG	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	3 cut(s)	16, 227, 303
PdiI	GCCGGC	2 cut(s)	26, 255
PkrI	GCNGC	9 cut(s)	14, 17, 71, 89, 109, 112, 154, 244, 252
PleI	GAGTC	1 cut(s)	118
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	106, 171
PspXI	VCTCGAGB	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	208
SatI	GCNGC	9 cut(s)	13, 16, 70, 88, 108, 111, 153, 243, 251
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	5 cut(s)	115, 139, 167, 210, 278
SfoI	GGCGCC	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	132
SgrAI	CRCCGGYG	2 cut(s)	148, 253
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
SspDI	GGCGCC	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	304
TaqI	TCGA	3 cut(s)	133, 263, 306
TauI	GCSGC	6 cut(s)	15, 72, 90, 110, 155, 253
TscAI	CASTG	1 cut(s)	219
TseI	GCWGC	3 cut(s)	15, 110, 242
TspRI	CASTG	1 cut(s)	219
XhoI	CTCGAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.