Rh7BG249500

DUF1785

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0022553
Physical Location & Seq
Reverse (-)
22420402 .. 22422233
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG249500.1

Sequence Viewer

Length: 333 bp
ATGAATTCCCAGAGAGTCTTGATCAAAGTCTTCGAATTGCAAGAATTGGAGGACGACCCTCGCAACTGGGCCCGCCTTGGTCATCTCCGATCTTGTCTCCGCCGCCTCCTTCGAGCCTCCCGGCCGCTGGTCCTCCCTCCACAATCAGCCGTGGTTGTTGTGCCGCCGGCGTCGTCGAAGGCGGTGAGGTTTCCGCAGAGGCCGGGGTTCGGGACGGTCGGTAAGAAAATTCAAGTCAGAGCCAATCACTTCCTGGTGCAGGTTGCAGACAGAGACCTCCACCATTACGATGCAAGTTTTTCCCTTTCTTTTTCTTTTTCTTTTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoN PAZ Piwi

Protein Analysis

110

Amino Acids

12.54

Weight (kDa)

11.11

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022553)

Species Orthologous Gene IDs
pyrus_communis pycom11g12480
rosa_samantha Rh5BG378400 Rh5BG379000 Rh7BG249500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AciI CCGC 7 cut(s) 73, 100, 103, 125, 164, 182, 194
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 2 cut(s) 4, 228
AcyI GRCGYC 1 cut(s) 170
AfiI CCNNNNNNNGG 3 cut(s) 127, 209, 259
AgsI TTSAA 1 cut(s) 233
AjnI CCWGG 1 cut(s) 252
Alw26I GTCTC 2 cut(s) 101, 267
AoxI GGCC 3 cut(s) 69, 122, 200
ApaI GGGCCC 1 cut(s) 73
ApoI RAATTY 2 cut(s) 4, 228
AspS9I GGNCC 3 cut(s) 69, 70, 130
AsuC2I CCSGG 2 cut(s) 121, 204
AsuHPI GGTGA 1 cut(s) 196
AsuII TTCGAA 1 cut(s) 33
AvaII GGWCC 1 cut(s) 130
BaeGI GKGCMC 1 cut(s) 73
BanII GRGCYC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 21
BcnI CCSGG 2 cut(s) 121, 204
BcoDI GTCTC 2 cut(s) 101, 267
BfuAI ACCTGC 1 cut(s) 250
BisI GCNGC 3 cut(s) 103, 125, 164
BlsI GCNGC 3 cut(s) 104, 126, 165
Bme1390I CCNGG 3 cut(s) 121, 204, 254
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 3 cut(s) 69, 70, 130
BmiI GGNNCC 1 cut(s) 71
BmrFI CCNGG 3 cut(s) 121, 204, 254
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 33
BpuMI CCSGG 2 cut(s) 121, 204
BsaHI GRCGYC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 76, 150, 203
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 209, 259
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 3 cut(s) 76, 150, 203
BseLI CCNNNNNNNGG 3 cut(s) 127, 209, 259
BseNI ACTGG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 73
BseX3I CGGCCG 1 cut(s) 122
BsgI GTGCAG 1 cut(s) 278
Bsh1285I CGRYCG 2 cut(s) 125, 219
BshFI GGCC 3 cut(s) 71, 124, 202
BsiEI CGRYCG 2 cut(s) 125, 219
BsiSI CCGG 3 cut(s) 121, 167, 203
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 3 cut(s) 127, 209, 259
BsmAI GTCTC 2 cut(s) 101, 267
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 3 cut(s) 71, 124, 202
Bso31I GGTCTC 1 cut(s) 267
Bsp119I TTCGAA 1 cut(s) 33
Bsp120I GGGCCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 21, 89
BspACI CCGC 7 cut(s) 73, 100, 103, 125, 164, 182, 194
BspANI GGCC 3 cut(s) 71, 124, 202
BspLI GGNNCC 1 cut(s) 71
BspMI ACCTGC 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 76, 150, 203
BssMI GATC 2 cut(s) 21, 89
BssNI GRCGYC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 170
BstBI TTCGAA 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 73, 168
BstDSI CCRYGG 1 cut(s) 150
BstENI CCTNNNNNAGG 1 cut(s) 257
BstKTI GATC 2 cut(s) 24, 92
BstMAI GTCTC 2 cut(s) 101, 267
BstMBI GATC 2 cut(s) 21, 89
BstMCI CGRYCG 2 cut(s) 125, 219
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 3 cut(s) 119, 202, 252
BstSLI GKGCMC 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 22
BstZI CGGCCG 1 cut(s) 122
BsuRI GGCC 3 cut(s) 71, 124, 202
BtgI CCRYGG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 73, 168
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 3 cut(s) 69, 70, 130
CseI GACGC 1 cut(s) 159
CviJI RGCY 6 cut(s) 71, 116, 124, 149, 202, 242
CviKI_1 RGCY 6 cut(s) 71, 116, 124, 149, 202, 242
DpnI GATC 2 cut(s) 23, 91
DpnII GATC 2 cut(s) 21, 89
EaeI YGGCCR 1 cut(s) 122
EagI CGGCCG 1 cut(s) 122
EciI GGCGGA 1 cut(s) 89
EclXI CGGCCG 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 130
Eco52I CGGCCG 1 cut(s) 122
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 76
FaqI GGGAC 1 cut(s) 226
FauI CCCGC 1 cut(s) 80
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 103, 125, 164
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 3 cut(s) 103, 125, 164
GluI GCNGC 3 cut(s) 103, 125, 164
HaeIII GGCC 3 cut(s) 71, 124, 202
HapII CCGG 3 cut(s) 121, 167, 203
HgaI GACGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 170
HinfI GANTC 1 cut(s) 15
HpaII CCGG 3 cut(s) 121, 167, 203
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 89, 239
Hpy188III TCNNGA 2 cut(s) 19, 211
Hpy99I CGWCG 2 cut(s) 175, 178
HpyAV CCTTC 2 cut(s) 119, 172
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 4 cut(s) 40, 259, 266, 293
Hsp92I GRCGYC 1 cut(s) 170
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 21, 89
LpnPI CCDG 9 cut(s) 23, 52, 113, 134, 180, 216, 239, 245, 266
LweI GCATC 1 cut(s) 280
MalI GATC 2 cut(s) 23, 91
MboI GATC 2 cut(s) 21, 89
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 4 cut(s) 4, 35, 44, 228
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 9 cut(s) 43, 69, 116, 127, 143, 147, 180, 192, 287
MreI CGCCGGCG 1 cut(s) 166
MroNI GCCGGC 1 cut(s) 166
MseI TTAA 1 cut(s) 331
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 127
MspI CCGG 3 cut(s) 121, 167, 203
MspR9I CCNGG 3 cut(s) 121, 204, 254
MvaI CCWGG 1 cut(s) 254
NaeI GCCGGC 1 cut(s) 168
NciI CCSGG 2 cut(s) 121, 204
NdeII GATC 2 cut(s) 21, 89
NgoMIV GCCGGC 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 71
NspV TTCGAA 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 168
PkrI GCNGC 3 cut(s) 104, 126, 165
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 71
PspOMI GGGCCC 1 cut(s) 69
PspPI GGNCC 3 cut(s) 69, 70, 130
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 3 cut(s) 103, 125, 164
Sau3AI GATC 2 cut(s) 21, 89
Sau96I GGNCC 3 cut(s) 69, 70, 130
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 3 cut(s) 121, 204, 254
SduI GDGCHC 1 cut(s) 73
SetI ASST 3 cut(s) 191, 264, 279
SfaNI GCATC 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 33
SgrAI CRCCGGYG 1 cut(s) 166
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 4 cut(s) 4, 35, 44, 228
SsiI CCGC 7 cut(s) 73, 100, 103, 125, 164, 182, 194
StyD4I CCNGG 3 cut(s) 119, 202, 252
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 3 cut(s) 33, 112, 176
TasI AATT 4 cut(s) 4, 35, 44, 228
TauI GCSGC 3 cut(s) 105, 127, 166
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 130
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 2 cut(s) 4, 228
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.