pycom11g22540

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0018515
Physical Location & Seq
Reverse (-)
25551158 .. 25552412
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g22540.2

Sequence Viewer

Length: 1209 bp
ATGGCTGCCATCATCGCACTCGACTCGATGAATCTTGTCCATCACTTCCTTGTTATTGTCTTGCTTCTGATAATCCCTTGGGCAGCTCCTTTATCTTTCGATTTCCCCACTTTCCAACAAAATGATCTTACCAACGGTACTGGATTATTAATTACCGAGGGAGATGCTGTTATCGCCAACCAATCCCTTCACCTCACCAAAGACAACGTGGATGGGGAAACAACTAATGGAAGTGTTGGCCGAGCTACTTACGGCGAACCCTTCCTCCTCCGGGACAAAGCTACCAGAAAACTTGCCGATTTCAACACAAGTTTCACATTTAGATTTGATGGCAAAAACAGTACTGTCCCCCCACATGACCAGGGGCTTGCTTTCTTCTTAGCGCCAAACGGATCCTTACTCAACCGAGCACTTGGAGTAGGTGGCAATATGGGCCTCCCAGTCAACAGCTCGGTGGAAAATGTTACAGAGCCAAGCAATGAGTACCCGTTTGTGGCTGTGGAGTTTGTTACCTTCCGGAATTCAAGGTCAACGGTGGAGGATCCAGACTGCGGTCACGTGGGGATAAAAATCAACTCTTTGAGTAATGTTACCAAGCCGTGGAATAGTGATATTGTGGAAGGAGAGCATAATCGTGCTGGGATTGGTTATAATTCGAGTTCGAAAAATTTTAGTGTTTCGCTCACCACTTATGCCAGTGATACCCGAGAGCAAGTGATTATTTCTCTCAGTTCCTTTGTTGATCTGAATAAATACTTGCGGGATTGTGTAATTGTCGGGTTTTCTGCTTCAACGGGTACTGCTCCTGCTCTGGTTGACATCATGTCATGGAATTTTACTTCTACTTCACTGGTAGCTGATGGAGCCCTTGCTCTTTCCAGCCAAGAAAAGAAAGGTCAATCTCTAGTCCCTTCGGCCCAAACGATAAAAGATGAATCTCTAGTTCCTGAGCCAAGCCCTATACCTAATAATGTCAAGCCAAGAAGACGGAAGAAACGAATGGGAGTCGTGATCAGTAGTGCTATTGGTGGGTTTATCTTGGCTTGTATTTTAGCTTTGGGTTTGTATAACTCGTGCAAGAAAAGAGCAACAGGAGGAAGGGCTGATATAGACCTTACCATTCCTAATGAATTGGGGCGACGAGGAACTTTTCTGATGGAGAATTGCTTGGAGTTGGAAGATATGGTGCCTTTTACAAAGGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

403

Amino Acids

43.39

Weight (kDa)

5.75

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018515)

Species Orthologous Gene IDs
malus_domestica MD11G1254600.v1.1
pyrus_communis pycom11g22540
rosa_multiflora Rmu_ssc0000100.1_g000015
rosa_roxburghii Rroxscaffold_1G00047530 Rroxscaffold_1G00047560 Rroxscaffold_1G00047710 Rroxscaffold_1G00047960
rosa_rugosa Rorug05G0132300 Rorug05G0132500
rosa_wichuraiana Rw5G020580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 651
AccB1I GGYRCC 1 cut(s) 1186
AccB7I CCANNNNNTGG 1 cut(s) 600
AccIII TCCGGA 1 cut(s) 516
AciI CCGC 2 cut(s) 552, 760
AclWI GGATC 4 cut(s) 387, 400, 536, 549
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 3 cut(s) 520, 667, 832
AcvI CACGTG 1 cut(s) 559
AfaI GTAC 4 cut(s) 139, 343, 485, 799
AfiI CCNNNNNNNGG 4 cut(s) 271, 493, 551, 600
AgsI TTSAA 3 cut(s) 304, 525, 792
AhdI GACNNNNNGTC 1 cut(s) 823
AjnI CCWGG 1 cut(s) 360
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
AluBI AGCT 6 cut(s) 86, 245, 281, 450, 857, 1055
AluI AGCT 6 cut(s) 86, 245, 281, 450, 857, 1055
Alw21I GWGCWC 1 cut(s) 412
AlwI GGATC 4 cut(s) 387, 400, 536, 549
Ama87I CYCGRG 1 cut(s) 705
Aor13HI TCCGGA 1 cut(s) 516
AoxI GGCC 3 cut(s) 238, 433, 915
ApeKI GCWGC 2 cut(s) 5, 83
ApoI RAATTY 3 cut(s) 520, 667, 832
AseI ATTAAT 1 cut(s) 149
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 2 cut(s) 433, 916
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 3 cut(s) 182, 187, 676
AsuII TTCGAA 1 cut(s) 662
AvaI CYCGRG 1 cut(s) 705
BamHI GGATCC 2 cut(s) 392, 541
BanI GGYRCC 1 cut(s) 1186
BanII GRGCYC 1 cut(s) 868
BauI CACGAG 1 cut(s) 1072
BbrPI CACGTG 1 cut(s) 559
BbsI GAAGAC 1 cut(s) 991
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 1 cut(s) 95
BccI CCATC 6 cut(s) 17, 48, 206, 323, 854, 1150
BceAI ACGGC 2 cut(s) 268, 583
BcgI CGANNNNNNTGC 4 cut(s) 6, 40, 146, 180
BciT130I CCWGG 1 cut(s) 362
BclI TGATCA 1 cut(s) 1011
BcnI CCSGG 1 cut(s) 272
BfaI CTAG 2 cut(s) 905, 941
BfoI RGCGCY 1 cut(s) 386
BisI GCNGC 2 cut(s) 6, 84
BlsI GCNGC 2 cut(s) 7, 85
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 272, 362
BmeRI GACNNNNNGTC 1 cut(s) 823
BmeT110I CYCGRG 1 cut(s) 705
BmgT120I GGNCC 2 cut(s) 433, 916
BmiI GGNNCC 4 cut(s) 394, 543, 865, 1188
BmrFI CCNGG 2 cut(s) 272, 362
BmrI ACTGGG 1 cut(s) 434
BmsI GCATC 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 434
BoxI GACNNNNGTC 1 cut(s) 552
BpiI GAAGAC 1 cut(s) 991
Bpu10I CCTNAGC 1 cut(s) 948
Bpu14I TTCGAA 1 cut(s) 662
BpuMI CCSGG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 559
BsaBI GATNNNNATC 1 cut(s) 569
BsaJI CCNNGG 4 cut(s) 77, 156, 361, 599
BsaWI WCCGGW 1 cut(s) 516
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 249, 279
Bsc4I CCNNNNNNNGG 4 cut(s) 271, 493, 551, 600
Bse1I ACTGG 4 cut(s) 145, 440, 696, 855
Bse3DI GCAATG 1 cut(s) 484
Bse8I GATNNNNATC 1 cut(s) 569
BseAI TCCGGA 1 cut(s) 516
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 4 cut(s) 77, 156, 361, 599
BseGI GGATG 1 cut(s) 217
BseJI GATNNNNATC 1 cut(s) 569
BseLI CCNNNNNNNGG 4 cut(s) 271, 493, 551, 600
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 742, 939
BseNI ACTGG 4 cut(s) 145, 440, 696, 855
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 95
BseYI CCCAGC 1 cut(s) 638
BshFI GGCC 3 cut(s) 240, 435, 917
BshNI GGYRCC 1 cut(s) 1186
BsiHKAI GWGCWC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 705
BsiSI CCGG 2 cut(s) 271, 517
BslFI GGGAC 3 cut(s) 287, 332, 893
BslI CCNNNNNNNGG 4 cut(s) 271, 493, 551, 600
BsmFI GGGAC 3 cut(s) 287, 332, 893
BsnI GGCC 3 cut(s) 240, 435, 917
BsoBI CYCGRG 1 cut(s) 705
Bsp119I TTCGAA 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 412, 868
Bsp13I TCCGGA 1 cut(s) 516
Bsp143I GATC 5 cut(s) 124, 392, 541, 742, 1011
BspACI CCGC 2 cut(s) 552, 760
BspANI GGCC 3 cut(s) 240, 435, 917
BspCNI CTCAG 2 cut(s) 741, 940
BspEI TCCGGA 1 cut(s) 516
BspLI GGNNCC 4 cut(s) 394, 543, 865, 1188
BspPI GGATC 4 cut(s) 387, 400, 536, 549
BspT104I TTCGAA 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 1186
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 4 cut(s) 145, 440, 696, 855
BssECI CCNNGG 4 cut(s) 77, 156, 361, 599
BssMI GATC 5 cut(s) 124, 392, 541, 742, 1011
BssSI CACGAG 1 cut(s) 1072
BssT1I CCWWGG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 1072
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 4 cut(s) 137, 341, 346, 535
BstBAI YACGTR 1 cut(s) 559
BstBI TTCGAA 1 cut(s) 662
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 3 cut(s) 379, 728, 948
BstDSI CCRYGG 1 cut(s) 599
BstF5I GGATG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 5 cut(s) 127, 395, 544, 745, 1014
BstMBI GATC 5 cut(s) 124, 392, 541, 742, 1011
BstMWI GCNNNNNNNGC 4 cut(s) 14, 173, 432, 863
BstNI CCWGG 1 cut(s) 362
BstPAI GACNNNNGTC 1 cut(s) 552
BstSCI CCNGG 2 cut(s) 270, 360
BstV1I GCAGC 1 cut(s) 95
BstV2I GAAGAC 1 cut(s) 991
BstX2I RGATCY 2 cut(s) 392, 541
BstYI RGATCY 2 cut(s) 392, 541
BsuRI GGCC 3 cut(s) 240, 435, 917
BtgI CCRYGG 1 cut(s) 599
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 703, 848
Cac8I GCNNGC 1 cut(s) 369
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 433, 916
Csp6I GTAC 4 cut(s) 138, 342, 484, 798
CviAII CATG 3 cut(s) 356, 823, 828
CviQI GTAC 4 cut(s) 138, 342, 484, 798
DdeI CTNAG 3 cut(s) 379, 728, 948
DpnI GATC 5 cut(s) 126, 394, 543, 744, 1013
DpnII GATC 5 cut(s) 124, 392, 541, 742, 1011
DriI GACNNNNNGTC 1 cut(s) 823
EaeI YGGCCR 1 cut(s) 238
Eam1105I GACNNNNNGTC 1 cut(s) 823
Eco130I CCWWGG 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 868
Eco72I CACGTG 1 cut(s) 559
Eco88I CYCGRG 1 cut(s) 705
EcoRI GAATTC 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 868
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 3 cut(s) 359, 826, 831
FaqI GGGAC 3 cut(s) 287, 332, 893
FatI CATG 3 cut(s) 355, 822, 827
FauI CCCGC 1 cut(s) 753
FbaI TGATCA 1 cut(s) 1011
Fnu4HI GCNGC 2 cut(s) 6, 84
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 868
Fsp4HI GCNGC 2 cut(s) 6, 84
FspBI CTAG 2 cut(s) 905, 941
GlaI GCGC 1 cut(s) 384
GluI GCNGC 2 cut(s) 6, 84
GsaI CCCAGC 1 cut(s) 642
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 3 cut(s) 240, 435, 917
HapII CCGG 2 cut(s) 271, 517
HhaI GCGC 1 cut(s) 385
Hin1II CATG 3 cut(s) 359, 826, 831
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HincII GTYRAC 3 cut(s) 445, 531, 817
HindII GTYRAC 3 cut(s) 445, 531, 817
HinfI GANTC 4 cut(s) 23, 31, 935, 1005
HpaII CCGG 2 cut(s) 271, 517
HphI GGTGA 3 cut(s) 182, 187, 676
Hpy166II GTNNAC 3 cut(s) 445, 531, 817
Hpy188I TCNGA 3 cut(s) 69, 747, 1155
Hpy188III TCNNGA 4 cut(s) 517, 545, 947, 1009
Hpy8I GTNNAC 3 cut(s) 445, 531, 817
Hpy99I CGWCG 1 cut(s) 1143
HpyAV CCTTC 6 cut(s) 197, 271, 523, 614, 921, 1092
HpyCH4III ACNGT 4 cut(s) 137, 341, 346, 535
HpyCH4IV ACGT 2 cut(s) 207, 558
HpyCH4V TGCA 1 cut(s) 1077
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 173, 432, 863
HpyF3I CTNAG 3 cut(s) 379, 728, 948
HpySE526I ACGT 2 cut(s) 207, 558
Hsp92II CATG 3 cut(s) 359, 826, 831
HspAI GCGC 1 cut(s) 383
Kpn2I TCCGGA 1 cut(s) 516
Ksp22I TGATCA 1 cut(s) 1011
Kzo9I GATC 5 cut(s) 124, 392, 541, 742, 1011
LmnI GCTCC 3 cut(s) 91, 808, 863
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 154
MaeI CTAG 2 cut(s) 905, 941
MaeII ACGT 2 cut(s) 207, 558
MaeIII GTNAC 4 cut(s) 463, 508, 554, 589
MalI GATC 5 cut(s) 126, 394, 543, 744, 1013
MboI GATC 5 cut(s) 124, 392, 541, 742, 1011
MboII GAAGA 4 cut(s) 367, 996, 1003, 1190
MflI RGATCY 2 cut(s) 392, 541
MhlI GDGCHC 2 cut(s) 412, 868
MluCI AATT 8 cut(s) 150, 520, 652, 667, 771, 832, 1130, 1162
MlyI GAGTC 2 cut(s) 17, 1014
MmeI TCCRAC 2 cut(s) 139, 1155
MnlI CCTC 8 cut(s) 151, 203, 275, 278, 446, 532, 1088, 1136
MroI TCCGGA 1 cut(s) 516
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 633
MspI CCGG 2 cut(s) 271, 517
MspR9I CCNGG 2 cut(s) 272, 362
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 4 cut(s) 14, 173, 432, 863
NciI CCSGG 1 cut(s) 272
NdeII GATC 5 cut(s) 124, 392, 541, 742, 1011
NlaIII CATG 3 cut(s) 359, 826, 831
NlaIV GGNNCC 4 cut(s) 394, 543, 865, 1188
NmeAIII GCCGAG 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 554
NspV TTCGAA 1 cut(s) 662
PcsI WCGNNNNNNNCGW 2 cut(s) 920, 994
PfeI GAWTC 2 cut(s) 31, 935
PflMI CCANNNNNTGG 1 cut(s) 600
PfoI TCCNGGA 1 cut(s) 270
PkrI GCNGC 2 cut(s) 7, 85
PleI GAGTC 2 cut(s) 17, 1013
PmaCI CACGTG 1 cut(s) 559
PmlI CACGTG 1 cut(s) 559
PpsI GAGTC 2 cut(s) 17, 1013
Ppu21I YACGTR 1 cut(s) 559
PshAI GACNNNNGTC 1 cut(s) 552
PshBI ATTAAT 1 cut(s) 149
PsiI TTATAA 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 360
PspCI CACGTG 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 638
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 4 cut(s) 394, 543, 865, 1188
PspPI GGNCC 2 cut(s) 433, 916
PsuI RGATCY 2 cut(s) 392, 541
RsaI GTAC 4 cut(s) 139, 343, 485, 799
RsaNI GTAC 4 cut(s) 138, 342, 484, 798
RseI CAYNNNNRTG 1 cut(s) 633
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 2 cut(s) 6, 84
Sau3AI GATC 5 cut(s) 124, 392, 541, 742, 1011
Sau96I GGNCC 2 cut(s) 433, 916
ScaI AGTACT 1 cut(s) 343
SchI GAGTC 2 cut(s) 17, 1014
ScrFI CCNGG 2 cut(s) 272, 362
SduI GDGCHC 2 cut(s) 412, 868
SfaNI GCATC 1 cut(s) 154
SfuI TTCGAA 1 cut(s) 662
SmiMI CAYNNNNRTG 1 cut(s) 633
Sse9I AATT 8 cut(s) 150, 520, 652, 667, 771, 832, 1130, 1162
SsiI CCGC 2 cut(s) 552, 760
SspMI CTAG 2 cut(s) 905, 941
StyD4I CCNGG 2 cut(s) 270, 360
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 4 cut(s) 137, 341, 346, 535
TaiI ACGT 2 cut(s) 210, 561
TaqI TCGA 5 cut(s) 21, 26, 99, 656, 662
TasI AATT 8 cut(s) 150, 520, 652, 667, 771, 832, 1130, 1162
TatI WGTACW 1 cut(s) 341
TfiI GAWTC 2 cut(s) 31, 935
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 2 cut(s) 703, 855
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 2 cut(s) 5, 83
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 3 cut(s) 44, 948, 1143
TspGWI ACGGA 2 cut(s) 405, 1003
TspRI CASTG 2 cut(s) 703, 855
Van91I CCANNNNNTGG 1 cut(s) 600
VspI ATTAAT 1 cut(s) 149
XapI RAATTY 3 cut(s) 520, 667, 832
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XspI CTAG 2 cut(s) 905, 941
ZrmI AGTACT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.