Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018515

Physical Location & Seq

Genomic Coordinates Reverse (-)

67463230 .. 67464734

Gene Structure 1505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGCTCAACAAAACAGTGCTACGATTAGTTATGATTCCATCTCAAAAAATCTTAGTGTTTCCTTAATTACTAGTTATGTACTTGAGGGTACACCTACAGCTATGAAAACGAGCACTAATCTGTATCACATAGTTGATCTGGAAAAATACTTGCCGGGTAGGGTCATTGTTGGGTTCTCAGCTGCAACAGATAGTAATACTTTCCATAATATAATCTCATGGAATTTTACTTCAACTTCACTTGTTGATCCTGAACCTCTACCTCCTTCTAGTCCACAAGTACCGGTGAGTCCAAATAAGGCACCTGCATCTCTAACTACCTCTGGCCAAGCAAGCCAAAATCAATCTCAAATTCCTTCCCCAGGTCCTAGTTCTATAGCCAAACCCGACAGACGAGCAATTCGGAAGGGAGACTGGCCCCGGCAGTTCTCCTATAGGGAGTTGGAAGTGGCAACGGGTAACTTTTCTGATGAAAACAAGCTCGGACATGGAGGTTTCGGTGACGTTTACAAAGGCTTCTTAAATAGCTCGAACTGTGATGTTGCTGTTAAGAAGATATTGAAGAATTCTGACCAGGGGCCAAGGGAGTATGGAGCAGAAATAAGAATCCTCAGTTCGCTTAGGCATCGGAATCTTGTGCAACTCCTTGGTTGGTGCCACGAAAAAGAAATGCTTCTTGTTTACGAGTTCATGCCCAATGGCAGTTTAGATTCTCATCTGTTCAAAGGAGGAAGCTTGTTAAGTTGGGAGATCAGATACAGAATTGCTCAAGGCTTGGCATCTGTGTTGATGTATATACAACACGAATGGGACCAATATGTGGTGCACAGGGATATCAAATCTAGTAACATTATGTTGGATTCAAAGTTCAGTCCAAAACTTGGAGATTTTGGGTTAGCTCGATTTGTTGACCACGACAAATCCTCGAAAACAACAATTGTTGCTGGAACTAGAGGGTATATGGCTCCAGAATATATTACTGAAAACAAGGCGAGTAAGCATACGGATATCTTCAGCTTCGGAGTTGTTGCCTTGGAAATAGCATGTGGGAGAAAACCCTTTGATCACAGGTTGGGACGTGATAAATTCAATATGGTGGAGTGGGTTTGGGAACTTTACAAAGGAGGGAACGTCATTGAAGCAGCTGATCCGAAACTGGGTGTGACTTATGATAGGAGGCAGATGGAGCGTTTGTTGATTGTTGGGTTGTGGTGTTCTCATCCAGATAAAAGTACACGGCCTGGAATAGAACAAGTGATTGATGTGCTTAACTTCAAAGACGTACACCCATTTCCTAATATTCCAGCACCTGCAGAGAGTTCTATTTATCTTACTAGTTCTGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009893 GO:0010310 GO:0010726 GO:0010941 GO:0010942 GO:0016020 GO:0019222 GO:0031323 GO:0031325 GO:0043207 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051194 GO:0051704 GO:0051707 GO:0065007 GO:0071944 GO:0098542 GO:2000377 GO:2000379

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

449

Amino Acids

50.09

Weight (kDa)

6.9

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	3 - 81	7.4e-14	Legume lectin domain
Pkinase	PF00069	156 - 420	6.2e-50	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	158 - 365	1.4e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018515)

Species	Orthologous Gene IDs
malus_domestica	MD11G1254600.v1.1
pyrus_communis	pycom11g22540
rosa_multiflora	Rmu_ssc0000100.1_g000015
rosa_roxburghii	Rroxscaffold_1G00047530 Rroxscaffold_1G00047560 Rroxscaffold_1G00047710 Rroxscaffold_1G00047960
rosa_rugosa	Rorug05G0132300 Rorug05G0132500
rosa_wichuraiana	Rw5G020580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	313, 1318
Acc36I	ACCTGC	2 cut(s)	313, 1318
AccB1I	GGYRCC	2 cut(s)	301, 654
AccB7I	CCANNNNNTGG	2 cut(s)	820, 881
AclWI	GGATC	2 cut(s)	242, 1142
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	4 cut(s)	223, 351, 565, 1085
AcuI	CTGAAG	1 cut(s)	997
AfaI	GTAC	5 cut(s)	81, 91, 282, 1234, 1284
AfiI	CCNNNNNNNGG	4 cut(s)	362, 820, 881, 1157
AgeI	ACCGGT	1 cut(s)	283
AgsI	TTSAA	7 cut(s)	234, 562, 724, 864, 1090, 1139, 1276
AhlI	ACTAGT	2 cut(s)	71, 1334
AjiI	CACGTC	1 cut(s)	1079
AjnI	CCWGG	3 cut(s)	361, 573, 1240
AloI	GAACNNNNNNTCC	2 cut(s)	851, 883
AluBI	AGCT	8 cut(s)	101, 182, 481, 528, 735, 899, 1017, 1145
AluI	AGCT	8 cut(s)	101, 182, 481, 528, 735, 899, 1017, 1145
Alw21I	GWGCWC	2 cut(s)	116, 828
Alw26I	GTCTC	1 cut(s)	405
Alw44I	GTGCAC	1 cut(s)	824
AlwI	GGATC	2 cut(s)	242, 1142
AlwNI	CAGNNNCTG	1 cut(s)	1310
AoxI	GGCC	4 cut(s)	325, 416, 578, 1238
ApaLI	GTGCAC	1 cut(s)	824
ApeKI	GCWGC	2 cut(s)	182, 1142
ApoI	RAATTY	4 cut(s)	223, 351, 565, 1085
ArsI	GACNNNNNNTTYG	2 cut(s)	384, 416
AsiGI	ACCGGT	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	672
AspS9I	GGNCC	4 cut(s)	365, 417, 578, 811
AsuC2I	CCSGG	2 cut(s)	156, 421
AsuHPI	GGTGA	2 cut(s)	298, 512
AvaII	GGWCC	2 cut(s)	365, 811
BaeGI	GKGCMC	1 cut(s)	828
BalI	TGGCCA	1 cut(s)	327
BanI	GGYRCC	2 cut(s)	301, 654
Bbv12I	GWGCWC	2 cut(s)	116, 828
BbvI	GCAGC	2 cut(s)	169, 1154
BccI	CCATC	2 cut(s)	47, 1177
BceAI	ACGGC	1 cut(s)	1253
BciT130I	CCWGG	3 cut(s)	363, 575, 1242
BclI	TGATCA	1 cut(s)	1063
BcnI	CCSGG	2 cut(s)	156, 421
BcoDI	GTCTC	1 cut(s)	405
BcuI	ACTAGT	2 cut(s)	71, 1334
BfaI	CTAG	6 cut(s)	72, 270, 369, 843, 951, 1335
BfmI	CTRYAG	4 cut(s)	96, 375, 433, 1311
BfuAI	ACCTGC	2 cut(s)	313, 1318
BisI	GCNGC	2 cut(s)	183, 1143
BlsI	GCNGC	2 cut(s)	184, 1144
Bme1390I	CCNGG	5 cut(s)	156, 363, 421, 575, 1242
Bme18I	GGWCC	2 cut(s)	365, 811
BmgBI	CACGTC	1 cut(s)	1079
BmgT120I	GGNCC	4 cut(s)	365, 417, 578, 811
BmiI	GGNNCC	6 cut(s)	303, 419, 579, 656, 812, 966
BmrFI	CCNGG	5 cut(s)	156, 363, 421, 575, 1242
BmrI	ACTGGG	1 cut(s)	1166
BmsI	GCATC	3 cut(s)	317, 634, 788
BmuI	ACTGGG	1 cut(s)	1166
BpmI	CTGGAG	1 cut(s)	951
Bpu10I	CCTNAGC	1 cut(s)	620
BpuEI	CTTGAG	2 cut(s)	104, 753
BpuMI	CCSGG	2 cut(s)	156, 421
BsaBI	GATNNNNATC	1 cut(s)	714
BsaJI	CCNNGG	6 cut(s)	361, 419, 574, 581, 646, 1032
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	4 cut(s)	1116, 1146, 1178, 1208
Bsc4I	CCNNNNNNNGG	4 cut(s)	362, 820, 881, 1157
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	419, 1161
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	3 cut(s)	363, 575, 1242
BseDI	CCNNGG	6 cut(s)	361, 419, 574, 581, 646, 1032
BseGI	GGATG	1 cut(s)	1219
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	4 cut(s)	362, 820, 881, 1157
BseMII	CTCAG	2 cut(s)	192, 625
BseNI	ACTGG	2 cut(s)	419, 1161
BseSI	GKGCMC	1 cut(s)	828
BseXI	GCAGC	2 cut(s)	169, 1154
BshFI	GGCC	4 cut(s)	327, 418, 580, 1240
BshNI	GGYRCC	2 cut(s)	301, 654
BshTI	ACCGGT	1 cut(s)	283
BsiHKAI	GWGCWC	2 cut(s)	116, 828
BsiSI	CCGG	3 cut(s)	155, 284, 421
BslFI	GGGAC	2 cut(s)	824, 1089
BslI	CCNNNNNNNGG	4 cut(s)	362, 820, 881, 1157
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	2 cut(s)	824, 1089
BsnI	GGCC	4 cut(s)	327, 418, 580, 1240
Bsp1286I	GDGCHC	2 cut(s)	116, 828
Bsp143I	GATC	5 cut(s)	136, 247, 750, 1063, 1147
BspANI	GGCC	4 cut(s)	327, 418, 580, 1240
BspCNI	CTCAG	2 cut(s)	191, 624
BspLI	GGNNCC	6 cut(s)	303, 419, 579, 656, 812, 966
BspMAI	CTGCAG	1 cut(s)	1315
BspMI	ACCTGC	2 cut(s)	313, 1318
BspPI	GGATC	2 cut(s)	242, 1142
BspT107I	GGYRCC	2 cut(s)	301, 654
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	419, 1161
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	6 cut(s)	361, 419, 574, 581, 646, 1032
BssMI	GATC	5 cut(s)	136, 247, 750, 1063, 1147
BssT1I	CCWWGG	3 cut(s)	581, 646, 1032
Bst2UI	CCWGG	3 cut(s)	363, 575, 1242
Bst4CI	ACNGT	2 cut(s)	17, 536
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	4 cut(s)	53, 178, 611, 620
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	1219
BstKTI	GATC	5 cut(s)	139, 250, 753, 1066, 1150
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	5 cut(s)	136, 247, 750, 1063, 1147
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 1186
BstNI	CCWGG	3 cut(s)	363, 575, 1242
BstNSI	RCATGY	1 cut(s)	1047
BstSCI	CCNGG	5 cut(s)	154, 361, 419, 573, 1240
BstSFI	CTRYAG	4 cut(s)	96, 375, 433, 1311
BstSLI	GKGCMC	1 cut(s)	828
BstV1I	GCAGC	2 cut(s)	169, 1154
BsuRI	GGCC	4 cut(s)	327, 418, 580, 1240
BtrI	CACGTC	1 cut(s)	1079
BtsCI	GGATG	1 cut(s)	1219
BtsIMutI	CAGTG	1 cut(s)	22
BveI	ACCTGC	2 cut(s)	313, 1318
Cac8I	GCNNGC	1 cut(s)	334
CaiI	CAGNNNCTG	1 cut(s)	1310
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	4 cut(s)	365, 417, 578, 811
Csp6I	GTAC	5 cut(s)	80, 90, 281, 1233, 1283
CspAI	ACCGGT	1 cut(s)	283
CviAII	CATG	4 cut(s)	219, 488, 691, 1044
CviQI	GTAC	5 cut(s)	80, 90, 281, 1233, 1283
DdeI	CTNAG	4 cut(s)	53, 178, 611, 620
DpnI	GATC	5 cut(s)	138, 249, 752, 1065, 1149
DpnII	GATC	5 cut(s)	136, 247, 750, 1063, 1147
EaeI	YGGCCR	1 cut(s)	325
Eco130I	CCWWGG	3 cut(s)	581, 646, 1032
Eco32I	GATATC	2 cut(s)	835, 1009
Eco47I	GGWCC	2 cut(s)	365, 811
Eco57I	CTGAAG	1 cut(s)	997
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	565
EcoRII	CCWGG	3 cut(s)	361, 573, 1240
EcoRV	GATATC	2 cut(s)	835, 1009
EcoT14I	CCWWGG	3 cut(s)	581, 646, 1032
ErhI	CCWWGG	3 cut(s)	581, 646, 1032
FaeI	CATG	4 cut(s)	222, 491, 694, 1047
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FaqI	GGGAC	2 cut(s)	824, 1089
FatI	CATG	4 cut(s)	218, 487, 690, 1043
FbaI	TGATCA	1 cut(s)	1063
Fnu4HI	GCNGC	2 cut(s)	183, 1143
FokI	GGATG	1 cut(s)	1206
Fsp4HI	GCNGC	2 cut(s)	183, 1143
FspBI	CTAG	6 cut(s)	72, 270, 369, 843, 951, 1335
GluI	GCNGC	2 cut(s)	183, 1143
GsuI	CTGGAG	1 cut(s)	951
HaeIII	GGCC	4 cut(s)	327, 418, 580, 1240
HapII	CCGG	3 cut(s)	155, 284, 421
Hin1II	CATG	4 cut(s)	222, 491, 694, 1047
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HindIII	AAGCTT	1 cut(s)	733
HinfI	GANTC	6 cut(s)	35, 289, 606, 631, 710, 860
HpaII	CCGG	3 cut(s)	155, 284, 421
HphI	GGTGA	2 cut(s)	298, 512
Hpy166II	GTNNAC	8 cut(s)	92, 275, 508, 682, 826, 910, 1235, 1285
Hpy188I	TCNGA	9 cut(s)	405, 469, 485, 571, 630, 755, 1022, 1152, 1342
Hpy188III	TCNNGA	4 cut(s)	140, 251, 968, 1223
Hpy8I	GTNNAC	8 cut(s)	92, 275, 508, 682, 826, 910, 1235, 1285
HpyAV	CCTTC	3 cut(s)	276, 366, 400
HpyCH4III	ACNGT	2 cut(s)	17, 536
HpyCH4IV	ACGT	4 cut(s)	504, 1078, 1131, 1281
HpyCH4V	TGCA	5 cut(s)	185, 308, 640, 826, 1313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 1186
HpyF3I	CTNAG	4 cut(s)	53, 178, 611, 620
HpySE526I	ACGT	4 cut(s)	504, 1078, 1131, 1281
Hsp92II	CATG	4 cut(s)	222, 491, 694, 1047
Ksp22I	TGATCA	1 cut(s)	1063
Kzo9I	GATC	5 cut(s)	136, 247, 750, 1063, 1147
LmnI	GCTCC	3 cut(s)	593, 970, 1186
Lsp1109I	GCAGC	2 cut(s)	169, 1154
LweI	GCATC	3 cut(s)	317, 634, 788
MaeI	CTAG	6 cut(s)	72, 270, 369, 843, 951, 1335
MaeII	ACGT	4 cut(s)	504, 1078, 1131, 1281
MaeIII	GTNAC	4 cut(s)	458, 500, 845, 1162
MalI	GATC	5 cut(s)	138, 249, 752, 1065, 1149
MboI	GATC	5 cut(s)	136, 247, 750, 1063, 1147
MboII	GAAGA	3 cut(s)	565, 574, 1003
MfeI	CAATTG	1 cut(s)	936
MhlI	GDGCHC	2 cut(s)	116, 828
MlsI	TGGCCA	1 cut(s)	327
MluCI	AATT	8 cut(s)	66, 223, 351, 399, 565, 762, 936, 1085
MluNI	TGGCCA	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	2 cut(s)	423, 837
Mox20I	TGGCCA	1 cut(s)	327
MroXI	GAANNNNTTC	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	327
MseI	TTAA	5 cut(s)	65, 521, 549, 740, 1269
Msp20I	TGGCCA	1 cut(s)	327
MspA1I	CMGCKG	2 cut(s)	182, 1145
MspI	CCGG	3 cut(s)	155, 284, 421
MspR9I	CCNGG	5 cut(s)	156, 363, 421, 575, 1242
MunI	CAATTG	1 cut(s)	936
MvaI	CCWGG	3 cut(s)	363, 575, 1242
MwoI	GCNNNNNNNGC	2 cut(s)	333, 1186
NciI	CCSGG	2 cut(s)	156, 421
NdeII	GATC	5 cut(s)	136, 247, 750, 1063, 1147
NlaIII	CATG	4 cut(s)	222, 491, 694, 1047
NlaIV	GGNNCC	6 cut(s)	303, 419, 579, 656, 812, 966
NmuCI	GTSAC	2 cut(s)	500, 1162
NspI	RCATGY	1 cut(s)	1047
PaqCI	CACCTGC	2 cut(s)	313, 1318
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	5 cut(s)	35, 606, 631, 710, 860
PflMI	CCANNNNNTGG	2 cut(s)	820, 881
PinAI	ACCGGT	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	184, 1144
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PpuMI	RGGWCCY	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	3 cut(s)	361, 573, 1240
PspGI	CCWGG	3 cut(s)	361, 573, 1240
PspN4I	GGNNCC	6 cut(s)	303, 419, 579, 656, 812, 966
PspPI	GGNCC	4 cut(s)	365, 417, 578, 811
PspPPI	RGGWCCY	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	1315
PstNI	CAGNNNCTG	1 cut(s)	1310
PvuII	CAGCTG	2 cut(s)	182, 1145
RsaI	GTAC	5 cut(s)	81, 91, 282, 1234, 1284
RsaNI	GTAC	5 cut(s)	80, 90, 281, 1233, 1283
SaqAI	TTAA	5 cut(s)	65, 521, 549, 740, 1269
SatI	GCNGC	2 cut(s)	183, 1143
Sau3AI	GATC	5 cut(s)	136, 247, 750, 1063, 1147
Sau96I	GGNCC	4 cut(s)	365, 417, 578, 811
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	5 cut(s)	156, 363, 421, 575, 1242
SduI	GDGCHC	2 cut(s)	116, 828
SfaNI	GCATC	3 cut(s)	317, 634, 788
SfcI	CTRYAG	4 cut(s)	96, 375, 433, 1311
SinI	GGWCC	2 cut(s)	365, 811
SmlI	CTYRAG	2 cut(s)	83, 768
SmoI	CTYRAG	2 cut(s)	83, 768
SpeI	ACTAGT	2 cut(s)	71, 1334
Sse9I	AATT	8 cut(s)	66, 223, 351, 399, 565, 762, 936, 1085
SspI	AATATT	1 cut(s)	1300
SspMI	CTAG	6 cut(s)	72, 270, 369, 843, 951, 1335
StyD4I	CCNGG	5 cut(s)	154, 361, 419, 573, 1240
StyI	CCWWGG	3 cut(s)	581, 646, 1032
TaaI	ACNGT	2 cut(s)	17, 536
TaiI	ACGT	4 cut(s)	507, 1081, 1134, 1284
TaqI	TCGA	3 cut(s)	530, 901, 926
TasI	AATT	8 cut(s)	66, 223, 351, 399, 565, 762, 936, 1085
TatI	WGTACW	2 cut(s)	79, 1232
TfiI	GAWTC	5 cut(s)	35, 606, 631, 710, 860
Tru1I	TTAA	5 cut(s)	65, 521, 549, 740, 1269
Tru9I	TTAA	5 cut(s)	65, 521, 549, 740, 1269
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	2 cut(s)	500, 1162
TseI	GCWGC	2 cut(s)	182, 1142
Tsp45I	GTSAC	2 cut(s)	500, 1162
TspDTI	ATGAA	3 cut(s)	119, 486, 679
TspGWI	ACGGA	1 cut(s)	1019
TspRI	CASTG	1 cut(s)	22
Van91I	CCANNNNNTGG	2 cut(s)	820, 881
VneI	GTGCAC	1 cut(s)	824
VpaK11BI	GGWCC	2 cut(s)	365, 811
XagI	CCTNNNNNAGG	1 cut(s)	360
XapI	RAATTY	4 cut(s)	223, 351, 565, 1085
XceI	RCATGY	1 cut(s)	1047
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	6 cut(s)	72, 270, 369, 843, 951, 1335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.