Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012731

Physical Location & Seq

Genomic Coordinates Reverse (-)

26306103 .. 26308409

Gene Structure 2307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCTGGATACAGAGCCGACGATGACTATGACTACCTCTTCAAGTTGGTCTTGATTGGGGACTCCGGCGTGGGGAAGTCCAATCTGCTCTCTAGGTTCACCAAGAACGAGTTCAACCTCGAGTCCAAATCCACCATTGGCGTTGAGTTTGCAACCAGGACCTTGACCGTTGACGGCAAAGTCATCAAGGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTACCGCGCCATCACTAGTGCTTACTATCGTGGGGCTGTGGGTGCACTCCTTGTGTACGATGTAACTCGCCATGCGACATTTGAGAATGTGGACAGATGGCTGAAGGAATTGAGAAACCACACCGATTCCAACATTGTTGTGATGCTCGTTGGGAACAAATCAGATCTCCGCCACCTTGTAGCTGTCTCAACTGAAGACGGGAAGTCCTATGCTGAGAAGGAGTCACTCTACTTCATGGAAACATCTGCACTGGAATCAAAGAATGTAGAAAACTCCTTCGCTGAAGTTCTGACTCAAATATACCATACTGTGAGCAAGAAGGCAGTTGAAGGGGGAGAAAATGGAACTTCATCTGTCCCAGCACAAGGAGAGAAAATAAACATGAAAGATGACGTGTCCGCGTTGAAGAGAGTTGGGTGCTGCTCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0006972 GO:0008104 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017076 GO:0019001 GO:0031090 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042538 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

218

Amino Acids

24.05

Weight (kDa)

5.87

Isoelectric Point (pI)

22.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 171	3e-13	ADP-ribosylation factor family
Ras	PF00071	15 - 175	1.2e-63	Ras family
Roc	PF08477	15 - 129	1e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	16 - 121	8.9e-07	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16920
fragaria_vesca	FvH4_3g18190
malus_domestica	MD00G1077000.v1.1 MD03G1275900.v1.1 MD11G1264700.v1.1
prunus_persica	Prupe.4G161600_v2.0.a1
pyrus_communis	pycom03g19300 pycom11g23300
rosa_chinensis	RchiOBHm_Chr5g0030721
rosa_laevigata	RLG00000033247
rosa_multiflora	Rmu_sc0003238.1_g000034
rosa_rugosa	Rorug05G0120400
rosa_samantha	Rh5AG211900 Rh5BG211000 Rh5CG234700 Rh5DG216400
rosa_wichuraiana	Rw0G000930 Rw5G019450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
Acc65I	GGTACC	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	222
AccII	CGCG	2 cut(s)	228, 623
AciI	CCGC	3 cut(s)	226, 391, 621
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	3 cut(s)	344, 435, 525
AfaI	GTAC	2 cut(s)	224, 278
AfiI	CCNNNNNNNGG	2 cut(s)	72, 587
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	4 cut(s)	43, 115, 551, 628
AhdI	GACNNNNNGTC	1 cut(s)	424
AhlI	ACTAGT	1 cut(s)	236
AjiI	CACGTC	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	155
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	2 cut(s)	404, 651
AluI	AGCT	2 cut(s)	404, 651
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	412
Alw44I	GTGCAC	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	211
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	642
Asp700I	GAANNNNTTC	1 cut(s)	110
Asp718I	GGTACC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	629
BccI	CCATC	2 cut(s)	239, 312
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	412
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	3 cut(s)	93, 237, 652
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	1 cut(s)	643
BlsI	GCNGC	1 cut(s)	644
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	631
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 587
Bse1I	ACTGG	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	72, 587
BseMII	CTCAG	2 cut(s)	206, 426
BseNI	ACTGG	1 cut(s)	477
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	629
BseYI	CCCAGC	1 cut(s)	580
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	2 cut(s)	228, 623
BshFI	GGCC	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	3 cut(s)	74, 215, 563
BslI	CCNNNNNNNGG	2 cut(s)	72, 587
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	3 cut(s)	74, 215, 563
BsnI	GGCC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	385
BspACI	CCGC	3 cut(s)	226, 391, 621
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	205, 427
BspFNI	CGCG	2 cut(s)	228, 623
BspLI	GGNNCC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	477
BssMI	GATC	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	2 cut(s)	169, 532
Bst6I	CTCTTC	2 cut(s)	44, 623
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	192, 435
BstFNI	CGCG	2 cut(s)	228, 623
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	1 cut(s)	388
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 648
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstSLI	GKGCMC	1 cut(s)	268
BstUI	CGCG	2 cut(s)	228, 623
BstV1I	GCAGC	1 cut(s)	629
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	213
BtrI	CACGTC	1 cut(s)	616
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 470
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	223, 277
CviAII	CATG	3 cut(s)	293, 457, 604
CviJI	RGCY	8 cut(s)	5, 17, 191, 213, 257, 322, 404, 651
CviKI_1	RGCY	8 cut(s)	5, 17, 191, 213, 257, 322, 404, 651
CviQI	GTAC	2 cut(s)	223, 277
DdeI	CTNAG	2 cut(s)	192, 435
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
DrdI	GACNNNNNNGTC	1 cut(s)	179
DriI	GACNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	44, 623
Eam1105I	GACNNNNNGTC	1 cut(s)	424
EarI	CTCTTC	2 cut(s)	44, 623
EciI	GGCGGA	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	3 cut(s)	344, 435, 525
Eco88I	CYCGRG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	155
FaeI	CATG	3 cut(s)	296, 460, 607
FaiI	YATR	7 cut(s)	30, 294, 432, 458, 523, 528, 605
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	3 cut(s)	74, 215, 563
FatI	CATG	3 cut(s)	292, 456, 603
Fnu4HI	GCNGC	1 cut(s)	643
Fsp4HI	GCNGC	1 cut(s)	643
FspBI	CTAG	3 cut(s)	93, 237, 652
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	643
GsaI	CCCAGC	1 cut(s)	584
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	296, 460, 607
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	6 cut(s)	62, 122, 347, 443, 476, 514
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	5 cut(s)	99, 172, 266, 277, 313
Hpy188I	TCNGA	3 cut(s)	195, 385, 513
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	5 cut(s)	99, 172, 266, 277, 313
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	5 cut(s)	319, 433, 508, 535, 545
HpyCH4III	ACNGT	2 cut(s)	169, 532
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	3 cut(s)	152, 266, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 648
HpyF3I	CTNAG	2 cut(s)	192, 435
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	3 cut(s)	296, 460, 607
HspAI	GCGC	1 cut(s)	228
KpnI	GGTACC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	385
LpnPI	CCDG	6 cut(s)	79, 142, 169, 195, 458, 594
Lsp1109I	GCAGC	1 cut(s)	629
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	3 cut(s)	93, 237, 652
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	2 cut(s)	283, 444
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	3 cut(s)	31, 428, 640
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	1 cut(s)	329
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	4 cut(s)	56, 131, 452, 508
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	2 cut(s)	47, 128
Mox20I	TGGCCA	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	213
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	2 cut(s)	228, 623
MwoI	GCNNNNNNNGC	2 cut(s)	263, 648
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	3 cut(s)	296, 460, 607
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	444
PaeR7I	CTCGAG	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	347, 476
PkrI	GCNGC	1 cut(s)	644
PleI	GAGTC	4 cut(s)	56, 130, 451, 508
PpsI	GAGTC	4 cut(s)	56, 130, 451, 508
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	580
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PspXI	VCTCGAGB	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	2 cut(s)	224, 278
RsaNI	GTAC	2 cut(s)	223, 277
RseI	CAYNNNNRTG	1 cut(s)	359
SatI	GCNGC	1 cut(s)	643
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	4 cut(s)	56, 131, 452, 508
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	9 cut(s)	39, 98, 120, 164, 224, 399, 406, 618, 653
SfaNI	GCATC	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	119, 646
SmoI	CTYRAG	2 cut(s)	119, 646
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	1 cut(s)	329
SsiI	CCGC	3 cut(s)	226, 391, 621
SspMI	CTAG	3 cut(s)	93, 237, 652
StyD4I	CCNGG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	169, 532
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	347, 476
TscAI	CASTG	2 cut(s)	211, 477
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	1 cut(s)	642
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	3 cut(s)	445, 561, 620
TspRI	CASTG	2 cut(s)	211, 477
VneI	GTGCAC	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	3 cut(s)	93, 237, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.