Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012397

Orthogroup ID

OG0017067

Physical Location & Seq

Genomic Coordinates Forward (+)

161963 .. 163095

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12397g00330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAATTGGCTAAGCATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCAGATATTAATGAACTCTATAGAAGAGTTATTTATCGGAACAATACTCTTATCGATCTCTTAACAACAAGTAGATCTACGCCAGGGGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAGGCTGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGACGGTCATAATAAGGTTTACAAGTCGTTTTCAGATGTAATTGAAGGAAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCGGGGCGTTCTGTGATTGTCGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTTTAATTAGACAACACTTTGCTTCGAATATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAGCCGGTTGTATGGGAAATACTTCAGGAAGTTATGCAAGGGCATCCCGTATTACTGAATAGGGCGCCTACTCTGCATAGATTAGGCATACAGGCGTTCCAACCCATTTTAGTAGAAGGACATGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGTGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCGGAGGCCCGTTTACTTATGTTTTCTCATATGAACCTCTTGTCTCCAGCTATTGGGGATCCTATTTCCGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGTGGAAATCGTCGAGGTATTTGTGCAAATAGGTATAATCCATGTAATCGCAGAAATTATCAAAATAAAAGAATTGATGATAATAACTATAAGTATACGAAAGAACCTTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGGCAGAAAAGAATCAATTTAGATAGCCCTTTGTGGCTCCGGTGTTCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3

Protein Analysis

362

Amino Acids

41.06

Weight (kDa)

8.8

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00180
pyrus_communis	pycom12397g00010 pycom12397g00330
rosa_chinensis	RchiOBHm_Chr2g0102161 RchiOBHm_CPg0502411
rosa_laevigata	RLG00000000248 RLG00000000282 RLG00000000312 RLG00000000316 RLG00000000338
rosa_roxburghii	Rroxscaffold_1G00008540 Rroxscaffold_2G00119080
rosa_rugosa	Rorug04G0169900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	622
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccI	GTMKAC	1 cut(s)	983
AccII	CGCG	2 cut(s)	282, 456
AciI	CCGC	3 cut(s)	280, 282, 779
AclWI	GGATC	2 cut(s)	830, 843
AcsI	RAATTY	1 cut(s)	546
AcuI	CTGAAG	1 cut(s)	566
AcyI	GRCGYC	1 cut(s)	623
AfaI	GTAC	3 cut(s)	243, 756, 849
AfiI	CCNNNNNNNGG	1 cut(s)	830
AgsI	TTSAA	2 cut(s)	341, 718
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	4 cut(s)	126, 472, 827, 1028
AluI	AGCT	4 cut(s)	126, 472, 827, 1028
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	3 cut(s)	82, 359, 825
AlwI	GGATC	2 cut(s)	830, 843
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	783
ApoI	RAATTY	1 cut(s)	546
ArsI	GACNNNNNNTTYG	2 cut(s)	669, 701
AseI	ATTAAT	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	625
AspS9I	GGNCC	2 cut(s)	419, 784
AsuHPI	GGTGA	1 cut(s)	746
AsuII	TTCGAA	2 cut(s)	25, 521
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	419
BamHI	GGATCC	1 cut(s)	835
BanI	GGYRCC	1 cut(s)	622
BanII	GRGCYC	2 cut(s)	128, 876
Bbv12I	GWGCWC	1 cut(s)	128
BccI	CCATC	3 cut(s)	43, 101, 725
BcgI	CGANNNNNNTGC	4 cut(s)	5, 39, 367, 401
BciT130I	CCWGG	1 cut(s)	210
BciVI	GTATCC	1 cut(s)	250
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	3 cut(s)	82, 359, 825
BfmI	CTRYAG	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	626
BfuI	GTATCC	1 cut(s)	250
BglII	AGATCT	1 cut(s)	200
BlpI	GCTNAGC	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	419, 784
BmiI	GGNNCC	4 cut(s)	421, 624, 837, 1070
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	610, 1006
BpmI	CTGGAG	1 cut(s)	807
Bpu1102I	GCTNAGC	1 cut(s)	12
Bpu14I	TTCGAA	2 cut(s)	25, 521
BpuEI	CTTGAG	2 cut(s)	759, 840
Bsa29I	ATCGAT	2 cut(s)	180, 439
BsaBI	GATNNNNATC	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	623
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	209, 280
BsaWI	WCCGGW	1 cut(s)	1071
Bsc4I	CCNNNNNNNGG	1 cut(s)	830
Bse118I	RCCGGY	1 cut(s)	562
Bse1I	ACTGG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	210
BseCI	ATCGAT	2 cut(s)	180, 439
BseDI	CCNNGG	2 cut(s)	209, 280
BseGI	GGATG	3 cut(s)	54, 601, 694
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	830
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	68
Bsh1236I	CGCG	2 cut(s)	282, 456
BshFI	GGCC	1 cut(s)	785
BshNI	GGYRCC	1 cut(s)	622
BshVI	ATCGAT	2 cut(s)	180, 439
BsiHKAI	GWGCWC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	563, 1072
BslFI	GGGAC	2 cut(s)	311, 405
BslI	CCNNNNNNNGG	1 cut(s)	830
BsmAI	GTCTC	3 cut(s)	82, 359, 825
BsmFI	GGGAC	2 cut(s)	311, 405
BsnI	GGCC	1 cut(s)	785
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	80
Bsp119I	TTCGAA	2 cut(s)	25, 521
Bsp1286I	GDGCHC	2 cut(s)	128, 876
Bsp143I	GATC	5 cut(s)	93, 181, 200, 736, 835
Bsp1720I	GCTNAGC	1 cut(s)	12
Bsp68I	TCGCGA	1 cut(s)	456
BspACI	CCGC	3 cut(s)	280, 282, 779
BspANI	GGCC	1 cut(s)	785
BspCNI	CTCAG	1 cut(s)	140
BspDI	ATCGAT	2 cut(s)	180, 439
BspFNI	CGCG	2 cut(s)	282, 456
BspLI	GGNNCC	4 cut(s)	421, 624, 837, 1070
BspPI	GGATC	2 cut(s)	830, 843
BspT104I	TTCGAA	2 cut(s)	25, 521
BspT107I	GGYRCC	1 cut(s)	622
BspTNI	GGTCTC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	2 cut(s)	209, 280
BssMI	GATC	5 cut(s)	93, 181, 200, 736, 835
BssNAI	GTATAC	1 cut(s)	984
BssNI	GRCGYC	1 cut(s)	623
Bst1107I	GTATAC	1 cut(s)	984
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	623
BstBI	TTCGAA	2 cut(s)	25, 521
BstDEI	CTNAG	3 cut(s)	12, 127, 537
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	3 cut(s)	54, 601, 694
BstFNI	CGCG	2 cut(s)	282, 456
BstH2I	RGCGCY	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	625
BstKTI	GATC	5 cut(s)	96, 184, 203, 739, 838
BstMAI	GTCTC	3 cut(s)	82, 359, 825
BstMBI	GATC	5 cut(s)	93, 181, 200, 736, 835
BstMWI	GCNNNNNNNGC	3 cut(s)	631, 871, 1025
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	683
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	2 cut(s)	282, 456
BstX2I	RGATCY	2 cut(s)	200, 835
BstYI	RGATCY	2 cut(s)	200, 835
BstZ17I	GTATAC	1 cut(s)	984
Bsu15I	ATCGAT	2 cut(s)	180, 439
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	785
BsuTUI	ATCGAT	2 cut(s)	180, 439
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	3 cut(s)	54, 601, 694
BtuMI	TCGCGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	625
Cfr10I	RCCGGY	1 cut(s)	562
Cfr13I	GGNCC	2 cut(s)	419, 784
Cfr42I	CCGCGG	1 cut(s)	283
ClaI	ATCGAT	2 cut(s)	180, 439
Csp6I	GTAC	3 cut(s)	242, 755, 848
CviAII	CATG	3 cut(s)	680, 752, 930
CviQI	GTAC	3 cut(s)	242, 755, 848
DdeI	CTNAG	3 cut(s)	12, 127, 537
DinI	GGCGCC	1 cut(s)	624
DpnI	GATC	5 cut(s)	95, 183, 202, 738, 837
DpnII	GATC	5 cut(s)	93, 181, 200, 736, 835
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	126
Eco24I	GRGCYC	2 cut(s)	128, 876
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	419
Eco53kI	GAGCTC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	566
Eco88I	CYCGRG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	208
EcoT38I	GRGCYC	2 cut(s)	128, 876
EgeI	GGCGCC	1 cut(s)	624
EheI	GGCGCC	1 cut(s)	624
FaeI	CATG	3 cut(s)	683, 755, 933
FalI	AAGNNNNNCTT	2 cut(s)	849, 881
FaqI	GGGAC	2 cut(s)	311, 405
FatI	CATG	3 cut(s)	679, 751, 929
FauNDI	CATATG	1 cut(s)	807
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	983
FokI	GGATG	3 cut(s)	61, 588, 681
FriOI	GRGCYC	2 cut(s)	128, 876
GlaI	GCGC	1 cut(s)	624
GsuI	CTGGAG	1 cut(s)	807
HaeII	RGCGCY	1 cut(s)	626
HaeIII	GGCC	1 cut(s)	785
HapII	CCGG	2 cut(s)	563, 1072
HhaI	GCGC	1 cut(s)	625
Hin1I	GRCGYC	1 cut(s)	623
Hin1II	CATG	3 cut(s)	683, 755, 933
Hin6I	GCGC	1 cut(s)	623
HinP1I	GCGC	1 cut(s)	623
HinfI	GANTC	4 cut(s)	276, 367, 714, 1044
HpaII	CCGG	2 cut(s)	563, 1072
HphI	GGTGA	1 cut(s)	746
Hpy166II	GTNNAC	6 cut(s)	116, 316, 692, 791, 984, 1079
Hpy188I	TCNGA	4 cut(s)	102, 130, 165, 331
Hpy188III	TCNNGA	9 cut(s)	80, 230, 266, 362, 455, 478, 551, 584, 857
Hpy8I	GTNNAC	6 cut(s)	116, 316, 692, 791, 984, 1079
Hpy99I	CGWCG	1 cut(s)	903
HpyAV	CCTTC	2 cut(s)	335, 668
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	5 cut(s)	595, 634, 722, 914, 1019
HpyF10VI	GCNNNNNNNGC	3 cut(s)	631, 871, 1025
HpyF3I	CTNAG	3 cut(s)	12, 127, 537
Hsp92I	GRCGYC	1 cut(s)	623
Hsp92II	CATG	3 cut(s)	683, 755, 933
HspAI	GCGC	1 cut(s)	623
KasI	GGCGCC	1 cut(s)	622
Ksp22I	TGATCA	1 cut(s)	736
KspI	CCGCGG	1 cut(s)	283
Kzo9I	GATC	5 cut(s)	93, 181, 200, 736, 835
LmnI	GCTCC	2 cut(s)	1025, 1074
LweI	GCATC	2 cut(s)	610, 1006
MalI	GATC	5 cut(s)	95, 183, 202, 738, 837
MboI	GATC	5 cut(s)	93, 181, 200, 736, 835
MboII	GAAGA	3 cut(s)	65, 162, 366
MfeI	CAATTG	1 cut(s)	1020
MflI	RGATCY	2 cut(s)	200, 835
MhlI	GDGCHC	2 cut(s)	128, 876
Mly113I	GGCGCC	1 cut(s)	623
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	4 cut(s)	135, 188, 500, 884
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	2 cut(s)	563, 1072
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	1020
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	2 cut(s)	282, 456
MwoI	GCNNNNNNNGC	3 cut(s)	631, 871, 1025
NarI	GGCGCC	1 cut(s)	623
NdeI	CATATG	1 cut(s)	807
NdeII	GATC	5 cut(s)	93, 181, 200, 736, 835
NlaIII	CATG	3 cut(s)	683, 755, 933
NlaIV	GGNNCC	4 cut(s)	421, 624, 837, 1070
NruI	TCGCGA	1 cut(s)	456
NspI	RCATGY	1 cut(s)	683
NspV	TTCGAA	2 cut(s)	25, 521
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	276, 714, 1044
PflMI	CCANNNNNTGG	1 cut(s)	830
PleI	GAGTC	1 cut(s)	361
PluTI	GGCGCC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	4 cut(s)	421, 624, 837, 1070
PspPI	GGNCC	2 cut(s)	419, 784
PspPPI	RGGWCCY	1 cut(s)	419
PsuI	RGATCY	2 cut(s)	200, 835
RruI	TCGCGA	1 cut(s)	456
RsaI	GTAC	3 cut(s)	243, 756, 849
RsaNI	GTAC	3 cut(s)	242, 755, 848
RseI	CAYNNNNRTG	1 cut(s)	441
SacI	GAGCTC	1 cut(s)	128
SacII	CCGCGG	1 cut(s)	283
SaqAI	TTAA	4 cut(s)	135, 188, 500, 884
Sau3AI	GATC	5 cut(s)	93, 181, 200, 736, 835
Sau96I	GGNCC	2 cut(s)	419, 784
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	128, 876
SfaNI	GCATC	2 cut(s)	610, 1006
SfcI	CTRYAG	1 cut(s)	145
SfoI	GGCGCC	1 cut(s)	624
Sfr303I	CCGCGG	1 cut(s)	283
SfuI	TTCGAA	2 cut(s)	25, 521
SgrBI	CCGCGG	1 cut(s)	283
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	2 cut(s)	774, 855
SmoI	CTYRAG	2 cut(s)	774, 855
SsiI	CCGC	3 cut(s)	280, 282, 779
SspDI	GGCGCC	1 cut(s)	622
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	302
TaqI	TCGA	6 cut(s)	25, 180, 387, 439, 521, 901
TaqII	GACCGA	1 cut(s)	106
TfiI	GAWTC	3 cut(s)	276, 714, 1044
Tru1I	TTAA	4 cut(s)	135, 188, 500, 884
Tru9I	TTAA	4 cut(s)	135, 188, 500, 884
TspDTI	ATGAA	4 cut(s)	153, 420, 740, 824
TspGWI	ACGGA	1 cut(s)	835
Van91I	CCANNNNNTGG	1 cut(s)	830
VpaK11BI	GGWCC	1 cut(s)	419
VspI	ATTAAT	1 cut(s)	135
XapI	RAATTY	1 cut(s)	546
XceI	RCATGY	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	983
XmnI	GAANNNNTTC	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.