DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00180 |
| pyrus_communis | pycom12397g00010 pycom12397g00330 |
| rosa_chinensis | RchiOBHm_Chr2g0102161 RchiOBHm_CPg0502411 |
| rosa_laevigata | RLG00000000248 RLG00000000282 RLG00000000312 RLG00000000316 RLG00000000338 |
| rosa_roxburghii | Rroxscaffold_1G00008540 Rroxscaffold_2G00119080 |
| rosa_rugosa | Rorug04G0169900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 1 cut(s) | 168 |
| AgsI | TTSAA | 2 cut(s) | 58, 178 |
| AhlI | ACTAGT | 1 cut(s) | 10 |
| AoxI | GGCC | 3 cut(s) | 89, 215, 235 |
| BbsI | GAAGAC | 1 cut(s) | 176 |
| BcuI | ACTAGT | 1 cut(s) | 10 |
| BfaI | CTAG | 3 cut(s) | 11, 189, 239 |
| BmrI | ACTGGG | 1 cut(s) | 149 |
| BmuI | ACTGGG | 1 cut(s) | 149 |
| BpiI | GAAGAC | 1 cut(s) | 176 |
| BsaAI | YACGTR | 1 cut(s) | 166 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 168 |
| Bse1I | ACTGG | 2 cut(s) | 150, 155 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 168 |
| BseNI | ACTGG | 2 cut(s) | 150, 155 |
| BshFI | GGCC | 3 cut(s) | 91, 217, 237 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 168 |
| BsnI | GGCC | 3 cut(s) | 91, 217, 237 |
| BspANI | GGCC | 3 cut(s) | 91, 217, 237 |
| BsrI | ACTGG | 2 cut(s) | 150, 155 |
| BstBAI | YACGTR | 1 cut(s) | 166 |
| BstC8I | GCNNGC | 1 cut(s) | 151 |
| BstDEI | CTNAG | 1 cut(s) | 208 |
| BstNSI | RCATGY | 1 cut(s) | 153 |
| BstV2I | GAAGAC | 1 cut(s) | 176 |
| BsuRI | GGCC | 3 cut(s) | 91, 217, 237 |
| Cac8I | GCNNGC | 1 cut(s) | 151 |
| CviAII | CATG | 1 cut(s) | 150 |
| CviJI | RGCY | 4 cut(s) | 91, 135, 217, 237 |
| CviKI_1 | RGCY | 4 cut(s) | 91, 135, 217, 237 |
| DdeI | CTNAG | 1 cut(s) | 208 |
| Eco147I | AGGCCT | 3 cut(s) | 91, 217, 237 |
| FaeI | CATG | 1 cut(s) | 153 |
| FaiI | YATR | 6 cut(s) | 40, 104, 151, 169, 195, 244 |
| FatI | CATG | 1 cut(s) | 149 |
| FspBI | CTAG | 3 cut(s) | 11, 189, 239 |
| HaeIII | GGCC | 3 cut(s) | 91, 217, 237 |
| Hin1II | CATG | 1 cut(s) | 153 |
| Hpy188I | TCNGA | 1 cut(s) | 118 |
| HpyAV | CCTTC | 3 cut(s) | 52, 59, 227 |
| HpyCH4IV | ACGT | 1 cut(s) | 165 |
| HpyCH4V | TGCA | 1 cut(s) | 42 |
| HpyF3I | CTNAG | 1 cut(s) | 208 |
| HpySE526I | ACGT | 1 cut(s) | 165 |
| Hsp92II | CATG | 1 cut(s) | 153 |
| LpnPI | CCDG | 3 cut(s) | 105, 131, 168 |
| MaeI | CTAG | 3 cut(s) | 11, 189, 239 |
| MaeII | ACGT | 1 cut(s) | 165 |
| MaeIII | GTNAC | 1 cut(s) | 157 |
| MboII | GAAGA | 2 cut(s) | 46, 176 |
| MfeI | CAATTG | 1 cut(s) | 43 |
| MluCI | AATT | 3 cut(s) | 43, 78, 227 |
| MnlI | CCTC | 1 cut(s) | 228 |
| MseI | TTAA | 1 cut(s) | 222 |
| MunI | CAATTG | 1 cut(s) | 43 |
| NlaIII | CATG | 1 cut(s) | 153 |
| NspI | RCATGY | 1 cut(s) | 153 |
| PaeI | GCATGC | 1 cut(s) | 153 |
| PceI | AGGCCT | 3 cut(s) | 91, 217, 237 |
| Ppu21I | YACGTR | 1 cut(s) | 166 |
| SaqAI | TTAA | 1 cut(s) | 222 |
| SetI | ASST | 1 cut(s) | 168 |
| SgeI | CNNG | 8 cut(s) | 23, 104, 158, 162, 167, 176, 201, 251 |
| SpeI | ACTAGT | 1 cut(s) | 10 |
| SphI | GCATGC | 1 cut(s) | 153 |
| Sse9I | AATT | 3 cut(s) | 43, 78, 227 |
| SseBI | AGGCCT | 3 cut(s) | 91, 217, 237 |
| SspMI | CTAG | 3 cut(s) | 11, 189, 239 |
| StuI | AGGCCT | 3 cut(s) | 91, 217, 237 |
| TaiI | ACGT | 1 cut(s) | 168 |
| TasI | AATT | 3 cut(s) | 43, 78, 227 |
| Tru1I | TTAA | 1 cut(s) | 222 |
| Tru9I | TTAA | 1 cut(s) | 222 |
| XceI | RCATGY | 1 cut(s) | 153 |
| XspI | CTAG | 3 cut(s) | 11, 189, 239 |