Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017067

Physical Location & Seq

Genomic Coordinates Forward (+)

50901959 .. 50904790

Gene Structure 2832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2118 bp

ATGAATCAGAATTTTTCTTCTATGATTGATCGGTATAAACATCAACAACTTCGGATTGGATTAGTTTCTCCTCAACAAATAAGCGCTTGGGCACAAAAAATCCTACCTAATGGAGAGATAGTTGGGGAGGTGACAAAACCCTATACTTTTCATTACAAAACAAATAAACCTGAAAAAGACGGATTGTTTTGTGAAAGAATTTTTGGGCCTATAAAAAGTGGGATTTGTGCTTGTGGAAATTATCGAGTAATCGGAGATGAAAAAAAAGACCCGAGATTTTGTGAACAGTGTGGAGTTGAATTTGTTGATTCTCGGATACGAAGATATCAAATGGGCTACATCAAACTGGCATGCCCAGTAACCCACGTATGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTCTTAGATAAGCCTCTTAAAGAATTAGAAGGCCTACCGGATGAGAGGAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATAGGATCCTATCCAAATTTTTCTTTTGCTAGGCCCATAGCTAAAAAACCCACTTTCTTACGATTACGAGGTTCATTCGAATACGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACTCCAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACTGGAGCAGGTGCTATCCGAGAACAATTAGCCGATCTGGATTTGAGAATTATTATAGATTATTCGCTTTTAGAATGGAAGGAATTGGGGGAAGAAGGGTCCACGGGGAATGAATGGGAAGATCGAAAGGTTGGAAGACGAAAGGATTTTTTGGTTAGACGCATGGAGTTGGCTAAGCATTTTATTCGAACAAATATAGAACCGGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCGCCCGAGTTGAGACCAATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATTTATCGGAACAATACTCTTATCGATCTCTTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCTGTGGATACACTTCTTGATAATGGAATCCGTGGACAACCAATGAGGGACGGTCATAATAAGGTTTACAAGTCGTTTTCAGATGTAATTGAAGGAAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCGGGGCGTTCTGTCATTGTTGTAGGTCCTTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATAGCAATAGAGCTTTTCCAGACATTTGTAATTCGTGGTTTAATTAGACAGCATTTTGCCTCGAATATAGGAGTGGCTAAGAGTAAAATTCGGGAAAAAGAGCCGGTTGTATGGGAAATACTTCAGGAAGTTATGCAAGGGCATCCCGTATTGCTGAATAGGGCGCCTACTCTGCATAGATTAGGCATACAGGCGTTCCAGCCCATTTTAGTAGAAGGACATGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTTAACGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCCCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTCCAGCTATTGGGGATCCTATTTCCGTACCAACCCAAGATATGCTTATCGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATAGGTATAATCCATATAATCGCACAAATTCGAAAAATGAAAGAATTGCCGATAATAATTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGGCAGAAAAGAATCAATTTAGATAGTCCCTTGTGGCTCCGGTGGCGGCTAGATCAACGTGTTATTACTTCAAGAGAAACTCCCATCGAAGTTCACTATGAGTCTTTGGGTACCTCTCATGAGATTTATGGGCACTATGTAATAGTAAGAAGTATAAAAAAAGAAGTTCTTTGTATATATGTTCGAACCACAGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAAGCTATCCAAGGGTTTTGCCGAGCCTACTCGTATGGTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006351 GO:0006354 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

705

Amino Acids

80.97

Weight (kDa)

9.01

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	15 - 130	7.1e-16	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_1	PF04997	278 - 396	1e-30	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	398 - 445	2.3e-07	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_2	PF00623	455 - 538	3e-26	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	543 - 585	7.2e-06	RNA polymerase Rpb1, domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00180
pyrus_communis	pycom12397g00010 pycom12397g00330
rosa_chinensis	RchiOBHm_Chr2g0102161 RchiOBHm_CPg0502411
rosa_laevigata	RLG00000000248 RLG00000000282 RLG00000000312 RLG00000000316 RLG00000000338
rosa_roxburghii	Rroxscaffold_1G00008540 Rroxscaffold_2G00119080
rosa_rugosa	Rorug04G0169900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1794
AarI	CACCTGC	1 cut(s)	653
Acc36I	ACCTGC	1 cut(s)	653
Acc65I	GGTACC	2 cut(s)	1958, 2111
AccB1I	GGYRCC	3 cut(s)	1438, 1958, 2111
AccB7I	CCANNNNNTGG	1 cut(s)	1646
AccBSI	CCGCTC	1 cut(s)	1707
AccII	CGCG	2 cut(s)	401, 1272
AciI	CCGC	3 cut(s)	893, 1707, 1894
AclWI	GGATC	6 cut(s)	479, 489, 502, 1560, 1646, 1659
AcsI	RAATTY	7 cut(s)	10, 198, 299, 505, 648, 1362, 1759
AcuI	CTGAAG	1 cut(s)	1382
AcyI	GRCGYC	1 cut(s)	1439
AfaI	GTAC	5 cut(s)	1059, 1572, 1665, 1960, 2113
AfeI	AGCGCT	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	369, 1646
AflIII	ACRYGT	1 cut(s)	1906
AgsI	TTSAA	5 cut(s)	299, 379, 475, 1157, 1920
AjiI	CACGTC	1 cut(s)	464
AjnI	CCWGG	3 cut(s)	584, 619, 1024
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	7 cut(s)	530, 942, 1067, 1288, 1643, 1844, 2078
AluI	AGCT	7 cut(s)	530, 942, 1067, 1288, 1643, 1844, 2078
Alw21I	GWGCWC	1 cut(s)	944
Alw26I	GTCTC	3 cut(s)	898, 1175, 1641
AlwI	GGATC	6 cut(s)	479, 489, 502, 1560, 1646, 1659
Ama87I	CYCGRG	2 cut(s)	271, 896
Aor51HI	AGCGCT	1 cut(s)	85
AoxI	GGCC	4 cut(s)	206, 436, 521, 1599
ApoI	RAATTY	7 cut(s)	10, 198, 299, 505, 648, 1362, 1759
ArsI	GACNNNNNNTTYG	2 cut(s)	1485, 1517
AseI	ATTAAT	1 cut(s)	951
Asp700I	GAANNNNTTC	1 cut(s)	1395
Asp718I	GGTACC	2 cut(s)	1958, 2111
AspLEI	GCGC	2 cut(s)	86, 1441
AspS9I	GGNCC	5 cut(s)	206, 522, 753, 1235, 1600
AsuHPI	GGTGA	1 cut(s)	142
AsuII	TTCGAA	5 cut(s)	567, 637, 841, 1763, 2032
AvaI	CYCGRG	2 cut(s)	271, 896
AvaII	GGWCC	2 cut(s)	753, 1235
BaeGI	GKGCMC	2 cut(s)	94, 1983
BamHI	GGATCC	2 cut(s)	494, 1651
BanI	GGYRCC	3 cut(s)	1438, 1958, 2111
BanII	GRGCYC	2 cut(s)	944, 1692
BbsI	GAAGAC	2 cut(s)	377, 796
Bbv12I	GWGCWC	1 cut(s)	944
BccI	CCATC	4 cut(s)	859, 917, 1541, 1940
BcgI	CGANNNNNNTGC	4 cut(s)	821, 855, 1183, 1217
BciT130I	CCWGG	3 cut(s)	586, 621, 1026
BciVI	GTATCC	2 cut(s)	309, 1066
BcoDI	GTCTC	3 cut(s)	898, 1175, 1641
BfaI	CTAG	3 cut(s)	390, 519, 1898
BfmI	CTRYAG	2 cut(s)	489, 961
BfoI	RGCGCY	2 cut(s)	87, 1442
BfuAI	ACCTGC	1 cut(s)	653
BfuI	GTATCC	2 cut(s)	309, 1066
BglII	AGATCT	1 cut(s)	1016
BisI	GCNGC	1 cut(s)	1895
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	1 cut(s)	1896
Bme1390I	CCNGG	3 cut(s)	586, 621, 1026
Bme18I	GGWCC	2 cut(s)	753, 1235
BmeT110I	CYCGRG	2 cut(s)	271, 896
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	5 cut(s)	206, 522, 753, 1235, 1600
BmiI	GGNNCC	7 cut(s)	496, 754, 1440, 1653, 1886, 1960, 2113
BmrFI	CCNGG	3 cut(s)	586, 621, 1026
BmrI	ACTGGG	1 cut(s)	350
BmsI	GCATC	3 cut(s)	606, 1426, 1822
BmuI	ACTGGG	1 cut(s)	350
BpiI	GAAGAC	2 cut(s)	377, 796
BpmI	CTGGAG	3 cut(s)	603, 678, 1623
Bpu1102I	GCTNAGC	1 cut(s)	828
Bpu14I	TTCGAA	5 cut(s)	567, 637, 841, 1763, 2032
BpuEI	CTTGAG	1 cut(s)	1575
Bsa29I	ATCGAT	2 cut(s)	996, 1255
BsaAI	YACGTR	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	1551
BsaHI	GRCGYC	1 cut(s)	1439
BsaI	GGTCTC	1 cut(s)	898
BsaJI	CCNNGG	4 cut(s)	756, 1096, 1717, 2083
BsaWI	WCCGGW	3 cut(s)	442, 856, 1887
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 1020, 1050
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 1646
Bse118I	RCCGGY	1 cut(s)	1378
Bse1I	ACTGG	4 cut(s)	351, 356, 661, 884
Bse8I	GATNNNNATC	1 cut(s)	1551
BseBI	CCWGG	3 cut(s)	586, 621, 1026
BseCI	ATCGAT	2 cut(s)	996, 1255
BseDI	CCNNGG	4 cut(s)	756, 1096, 1717, 2083
BseGI	GGATG	5 cut(s)	451, 597, 870, 1417, 1510
BseJI	GATNNNNATC	1 cut(s)	1551
BseLI	CCNNNNNNNGG	2 cut(s)	369, 1646
BseNI	ACTGG	4 cut(s)	351, 356, 661, 884
BseRI	GAGGAG	1 cut(s)	60
BseSI	GKGCMC	2 cut(s)	94, 1983
Bsh1236I	CGCG	2 cut(s)	401, 1272
BshFI	GGCC	4 cut(s)	208, 438, 523, 1601
BshNI	GGYRCC	3 cut(s)	1438, 1958, 2111
BshVI	ATCGAT	2 cut(s)	996, 1255
BsiHKAI	GWGCWC	1 cut(s)	944
BsiHKCI	CYCGRG	2 cut(s)	271, 896
BsiSI	CCGG	4 cut(s)	443, 857, 1379, 1888
BslFI	GGGAC	2 cut(s)	1127, 1860
BslI	CCNNNNNNNGG	2 cut(s)	369, 1646
BsmAI	GTCTC	3 cut(s)	898, 1175, 1641
BsmFI	GGGAC	2 cut(s)	1127, 1860
BsnI	GGCC	4 cut(s)	208, 438, 523, 1601
Bso31I	GGTCTC	1 cut(s)	898
BsoBI	CYCGRG	2 cut(s)	271, 896
Bsp119I	TTCGAA	5 cut(s)	567, 637, 841, 1763, 2032
Bsp1286I	GDGCHC	4 cut(s)	94, 944, 1692, 1983
Bsp1720I	GCTNAGC	1 cut(s)	828
Bsp68I	TCGCGA	2 cut(s)	401, 1272
BspACI	CCGC	3 cut(s)	893, 1707, 1894
BspANI	GGCC	4 cut(s)	208, 438, 523, 1601
BspDI	ATCGAT	2 cut(s)	996, 1255
BspFNI	CGCG	2 cut(s)	401, 1272
BspHI	TCATGA	1 cut(s)	1966
BspLI	GGNNCC	7 cut(s)	496, 754, 1440, 1653, 1886, 1960, 2113
BspMI	ACCTGC	1 cut(s)	653
BspPI	GGATC	6 cut(s)	479, 489, 502, 1560, 1646, 1659
BspT104I	TTCGAA	5 cut(s)	567, 637, 841, 1763, 2032
BspT107I	GGYRCC	3 cut(s)	1438, 1958, 2111
BspTNI	GGTCTC	1 cut(s)	898
BsrBI	CCGCTC	1 cut(s)	1707
BsrFI	RCCGGY	1 cut(s)	1378
BsrI	ACTGG	4 cut(s)	351, 356, 661, 884
BssAI	RCCGGY	1 cut(s)	1378
BssECI	CCNNGG	4 cut(s)	756, 1096, 1717, 2083
BssNI	GRCGYC	1 cut(s)	1439
BssT1I	CCWWGG	1 cut(s)	2083
Bst2UI	CCWGG	3 cut(s)	586, 621, 1026
Bst4CI	ACNGT	3 cut(s)	288, 1118, 2041
Bst6I	CTCTTC	1 cut(s)	961
BstACI	GRCGYC	1 cut(s)	1439
BstBAI	YACGTR	1 cut(s)	367
BstBI	TTCGAA	5 cut(s)	567, 637, 841, 1763, 2032
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	3 cut(s)	409, 828, 1353
BstDSI	CCRYGG	2 cut(s)	756, 1096
BstF5I	GGATG	5 cut(s)	451, 597, 870, 1417, 1510
BstFNI	CGCG	2 cut(s)	401, 1272
BstH2I	RGCGCY	2 cut(s)	87, 1442
BstHHI	GCGC	2 cut(s)	86, 1441
BstMAI	GTCTC	3 cut(s)	898, 1175, 1641
BstMWI	GCNNNNNNNGC	5 cut(s)	1447, 1687, 1713, 1841, 1891
BstNI	CCWGG	3 cut(s)	586, 621, 1026
BstNSI	RCATGY	2 cut(s)	354, 1499
BstSCI	CCNGG	3 cut(s)	584, 619, 1024
BstSFI	CTRYAG	2 cut(s)	489, 961
BstSLI	GKGCMC	2 cut(s)	94, 1983
BstUI	CGCG	2 cut(s)	401, 1272
BstV2I	GAAGAC	2 cut(s)	377, 796
BstX2I	RGATCY	4 cut(s)	484, 494, 1016, 1651
BstYI	RGATCY	4 cut(s)	484, 494, 1016, 1651
Bsu15I	ATCGAT	2 cut(s)	996, 1255
BsuI	GTATCC	2 cut(s)	309, 1066
BsuRI	GGCC	4 cut(s)	208, 438, 523, 1601
BsuTUI	ATCGAT	2 cut(s)	996, 1255
BtgI	CCRYGG	2 cut(s)	756, 1096
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	5 cut(s)	451, 597, 870, 1417, 1510
BtsIMutI	CAGTG	1 cut(s)	293
BtuMI	TCGCGA	2 cut(s)	401, 1272
BveI	ACCTGC	1 cut(s)	653
Cac8I	GCNNGC	1 cut(s)	352
CciI	TCATGA	1 cut(s)	1966
CfoI	GCGC	2 cut(s)	86, 1441
Cfr10I	RCCGGY	1 cut(s)	1378
Cfr13I	GGNCC	5 cut(s)	206, 522, 753, 1235, 1600
ClaI	ATCGAT	2 cut(s)	996, 1255
CseI	GACGC	1 cut(s)	822
Csp6I	GTAC	5 cut(s)	1058, 1571, 1664, 1959, 2112
CviAII	CATG	5 cut(s)	351, 817, 1496, 1568, 1967
CviQI	GTAC	5 cut(s)	1058, 1571, 1664, 1959, 2112
DdeI	CTNAG	3 cut(s)	409, 828, 1353
DinI	GGCGCC	1 cut(s)	1440
Eam1104I	CTCTTC	1 cut(s)	961
EarI	CTCTTC	1 cut(s)	961
EciI	GGCGGA	1 cut(s)	882
Ecl136II	GAGCTC	1 cut(s)	942
Eco130I	CCWWGG	1 cut(s)	2083
Eco147I	AGGCCT	1 cut(s)	438
Eco24I	GRGCYC	2 cut(s)	944, 1692
Eco31I	GGTCTC	1 cut(s)	898
Eco32I	GATATC	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	753, 1235
Eco47III	AGCGCT	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	942
Eco57I	CTGAAG	1 cut(s)	1382
Eco88I	CYCGRG	2 cut(s)	271, 896
EcoICRI	GAGCTC	1 cut(s)	942
EcoO109I	RGGNCCY	1 cut(s)	1235
EcoRII	CCWGG	3 cut(s)	584, 619, 1024
EcoRV	GATATC	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	2083
EcoT38I	GRGCYC	2 cut(s)	944, 1692
EgeI	GGCGCC	1 cut(s)	1440
EheI	GGCGCC	1 cut(s)	1440
ErhI	CCWWGG	1 cut(s)	2083
FaeI	CATG	5 cut(s)	354, 820, 1499, 1571, 1970
FalI	AAGNNNNNCTT	4 cut(s)	1665, 1697, 2001, 2033
FaqI	GGGAC	2 cut(s)	1127, 1860
FatI	CATG	5 cut(s)	350, 816, 1495, 1567, 1966
FauI	CCCGC	1 cut(s)	1700
FauNDI	CATATG	1 cut(s)	1623
Fnu4HI	GCNGC	1 cut(s)	1895
FokI	GGATG	5 cut(s)	458, 584, 877, 1404, 1497
FriOI	GRGCYC	2 cut(s)	944, 1692
Fsp4HI	GCNGC	1 cut(s)	1895
FspBI	CTAG	3 cut(s)	390, 519, 1898
GlaI	GCGC	2 cut(s)	85, 1440
GluI	GCNGC	1 cut(s)	1895
GsuI	CTGGAG	3 cut(s)	603, 678, 1623
HaeII	RGCGCY	2 cut(s)	87, 1442
HaeIII	GGCC	4 cut(s)	208, 438, 523, 1601
HapII	CCGG	4 cut(s)	443, 857, 1379, 1888
HgaI	GACGC	1 cut(s)	822
HhaI	GCGC	2 cut(s)	86, 1441
Hin1I	GRCGYC	1 cut(s)	1439
Hin1II	CATG	5 cut(s)	354, 820, 1499, 1571, 1970
Hin6I	GCGC	2 cut(s)	84, 1439
HinP1I	GCGC	2 cut(s)	84, 1439
HinfI	GANTC	9 cut(s)	4, 308, 403, 1092, 1183, 1627, 1711, 1860, 1949
HpaII	CCGG	4 cut(s)	443, 857, 1379, 1888
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	8 cut(s)	284, 756, 932, 1100, 1132, 1508, 1607, 1942
Hpy8I	GTNNAC	8 cut(s)	284, 756, 932, 1100, 1132, 1508, 1607, 1942
HpyAV	CCTTC	6 cut(s)	428, 727, 743, 1151, 1248, 1484
HpyCH4III	ACNGT	3 cut(s)	288, 1118, 2041
HpyCH4IV	ACGT	4 cut(s)	366, 382, 463, 1906
HpyCH4V	TGCA	4 cut(s)	1411, 1450, 1730, 1835
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1447, 1687, 1713, 1841, 1891
HpyF3I	CTNAG	3 cut(s)	409, 828, 1353
HpySE526I	ACGT	4 cut(s)	366, 382, 463, 1906
Hsp92I	GRCGYC	1 cut(s)	1439
Hsp92II	CATG	5 cut(s)	354, 820, 1499, 1571, 1970
HspAI	GCGC	2 cut(s)	84, 1439
KasI	GGCGCC	1 cut(s)	1438
KpnI	GGTACC	2 cut(s)	1962, 2115
LmnI	GCTCC	3 cut(s)	659, 1841, 1890
LweI	GCATC	3 cut(s)	606, 1426, 1822
MaeI	CTAG	3 cut(s)	390, 519, 1898
MaeII	ACGT	4 cut(s)	366, 382, 463, 1906
MaeIII	GTNAC	2 cut(s)	130, 358
MbiI	CCGCTC	1 cut(s)	1707
MfeI	CAATTG	1 cut(s)	1836
MflI	RGATCY	4 cut(s)	484, 494, 1016, 1651
MhlI	GDGCHC	4 cut(s)	94, 944, 1692, 1983
Mly113I	GGCGCC	1 cut(s)	1439
MlyI	GAGTC	2 cut(s)	1177, 1958
MmeI	TCCRAC	1 cut(s)	766
MroXI	GAANNNNTTC	1 cut(s)	1395
MseI	TTAA	6 cut(s)	423, 951, 1004, 1316, 1533, 1700
MslI	CAYNNNNRTG	1 cut(s)	1257
MspI	CCGG	4 cut(s)	443, 857, 1379, 1888
MspR9I	CCNGG	3 cut(s)	586, 621, 1026
MunI	CAATTG	1 cut(s)	1836
MvaI	CCWGG	3 cut(s)	586, 621, 1026
MvnI	CGCG	2 cut(s)	401, 1272
MwoI	GCNNNNNNNGC	5 cut(s)	1447, 1687, 1713, 1841, 1891
NarI	GGCGCC	1 cut(s)	1439
NdeI	CATATG	1 cut(s)	1623
NlaIII	CATG	5 cut(s)	354, 820, 1499, 1571, 1970
NlaIV	GGNNCC	7 cut(s)	496, 754, 1440, 1653, 1886, 1960, 2113
NmeAIII	GCCGAG	1 cut(s)	1742
NmuCI	GTSAC	1 cut(s)	130
NruI	TCGCGA	2 cut(s)	401, 1272
NspI	RCATGY	2 cut(s)	354, 1499
NspV	TTCGAA	5 cut(s)	567, 637, 841, 1763, 2032
PaeI	GCATGC	1 cut(s)	354
PagI	TCATGA	1 cut(s)	1966
PaqCI	CACCTGC	1 cut(s)	653
PceI	AGGCCT	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	1395
PfeI	GAWTC	7 cut(s)	4, 308, 403, 1092, 1627, 1711, 1860
PflMI	CCANNNNNTGG	1 cut(s)	1646
PfoI	TCCNGGA	1 cut(s)	584
PkrI	GCNGC	1 cut(s)	1896
PleI	GAGTC	2 cut(s)	1177, 1957
PluTI	GGCGCC	1 cut(s)	1442
PpsI	GAGTC	2 cut(s)	1177, 1957
Ppu21I	YACGTR	1 cut(s)	367
PpuMI	RGGWCCY	1 cut(s)	1235
PshBI	ATTAAT	1 cut(s)	951
PsiI	TTATAA	1 cut(s)	1794
Psp124BI	GAGCTC	1 cut(s)	944
Psp5II	RGGWCCY	1 cut(s)	1235
Psp6I	CCWGG	3 cut(s)	584, 619, 1024
PspGI	CCWGG	3 cut(s)	584, 619, 1024
PspN4I	GGNNCC	7 cut(s)	496, 754, 1440, 1653, 1886, 1960, 2113
PspPI	GGNCC	5 cut(s)	206, 522, 753, 1235, 1600
PspPPI	RGGWCCY	1 cut(s)	1235
PsuI	RGATCY	4 cut(s)	484, 494, 1016, 1651
RruI	TCGCGA	2 cut(s)	401, 1272
RsaI	GTAC	5 cut(s)	1059, 1572, 1665, 1960, 2113
RsaNI	GTAC	5 cut(s)	1058, 1571, 1664, 1959, 2112
RseI	CAYNNNNRTG	1 cut(s)	1257
SacI	GAGCTC	1 cut(s)	944
SaqAI	TTAA	6 cut(s)	423, 951, 1004, 1316, 1533, 1700
SatI	GCNGC	1 cut(s)	1895
Sau96I	GGNCC	5 cut(s)	206, 522, 753, 1235, 1600
SchI	GAGTC	2 cut(s)	1177, 1958
ScrFI	CCNGG	3 cut(s)	586, 621, 1026
SduI	GDGCHC	4 cut(s)	94, 944, 1692, 1983
SfaNI	GCATC	3 cut(s)	606, 1426, 1822
SfcI	CTRYAG	2 cut(s)	489, 961
SfoI	GGCGCC	1 cut(s)	1440
SfuI	TTCGAA	5 cut(s)	567, 637, 841, 1763, 2032
SinI	GGWCC	2 cut(s)	753, 1235
SmiMI	CAYNNNNRTG	1 cut(s)	1257
SmlI	CTYRAG	1 cut(s)	1590
SmoI	CTYRAG	1 cut(s)	1590
SphI	GCATGC	1 cut(s)	354
SseBI	AGGCCT	1 cut(s)	438
SsiI	CCGC	3 cut(s)	893, 1707, 1894
SspDI	GGCGCC	1 cut(s)	1438
SspMI	CTAG	3 cut(s)	390, 519, 1898
SstI	GAGCTC	1 cut(s)	944
StuI	AGGCCT	1 cut(s)	438
StyD4I	CCNGG	3 cut(s)	584, 619, 1024
StyI	CCWWGG	1 cut(s)	2083
TaaI	ACNGT	3 cut(s)	288, 1118, 2041
TaiI	ACGT	4 cut(s)	369, 385, 466, 1909
TauI	GCSGC	1 cut(s)	1897
TfiI	GAWTC	7 cut(s)	4, 308, 403, 1092, 1627, 1711, 1860
Tru1I	TTAA	6 cut(s)	423, 951, 1004, 1316, 1533, 1700
Tru9I	TTAA	6 cut(s)	423, 951, 1004, 1316, 1533, 1700
TscAI	CASTG	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspGWI	ACGGA	3 cut(s)	195, 1085, 1651
TspRI	CASTG	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	1646
VpaK11BI	GGWCC	2 cut(s)	753, 1235
VspI	ATTAAT	1 cut(s)	951
XapI	RAATTY	7 cut(s)	10, 198, 299, 505, 648, 1362, 1759
XceI	RCATGY	2 cut(s)	354, 1499
XmnI	GAANNNNTTC	1 cut(s)	1395
XspI	CTAG	3 cut(s)	390, 519, 1898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.