Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006521

Physical Location & Seq

Genomic Coordinates Reverse (-)

17409636 .. 17410121

Gene Structure 486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTATCACAAAACTCACTCAGTAATCAATGGGCGACGCCAATTGATAAAATTGTTTGAATTTCTGCGTTCTCTGCTCGTTTTCTCAACTGGGTTTTCTCCAATTTTTTTACTTTACGGGTGCCCACATGGGATTGGGACCCGATCGATCACAGAGCAGCGAAGGTTTTGTGGAAGTGATTGGAGAATAGGGACGATGGAATCGGAGCTGGGTTTAATTGAGCAGTCGTTCATCAGCCGCTACTCGCTCTGGGTCCAGGAAGCTCTGGGGGAATTGGCCAACAGCTTCATGATCACTGACCCTTGGATTTCCGGGCACCCAATCGTGTTCGCGAGCAAAGGGTTCTTGAAAATGTCGGGATATTCGAAGAACGAGGTGGTCGGGAGGAACGGCAGAGTGTTTCAGGGTCCGGGGACTTGCAGGCGGTCGGTCATGGTGGTCGGGAGGCCATCAGGGAGGAACGAGCTGTCCATGTTAATTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS_9

Protein Analysis

162

Amino Acids

18.17

Weight (kDa)

9.8

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47380 AT2G47380 AT3G62400 AT5G61310 AT5G61310 AT5G61310 AT5G61310 AT5G61310 AT5G61310
fragaria_vesca	FvH4_5g39150
pyrus_communis	pycom12g14930
rosa_chinensis	RchiOBHm_Chr5g0055711 RchiOBHm_Chr7g0241161 RchiOBHm_Chr7g0241221
rosa_laevigata	RLG00000000590
rosa_multiflora	Rmu_co8373035.1_g000001 Rmu_sc0006665.1_g000002 Rmu_sc0033176.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219220
rosa_rugosa	Rorug07G0343600
rosa_samantha	Rh5CG398900 Rh7AG498200 Rh7CG515000 Rh7DG482900
rosa_wichuraiana	Rw5G020270 Rw7G042020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	120, 315
AccII	CGCG	1 cut(s)	332
AciI	CCGC	2 cut(s)	238, 424
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	59, 349
AjnI	CCWGG	1 cut(s)	255
AloI	GAACNNNNNNTCC	2 cut(s)	452, 484
AluBI	AGCT	4 cut(s)	208, 263, 285, 466
AluI	AGCT	4 cut(s)	208, 263, 285, 466
AoxI	GGCC	2 cut(s)	276, 446
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	59
AspS9I	GGNCC	3 cut(s)	138, 253, 407
AsuC2I	CCSGG	2 cut(s)	313, 411
AsuII	TTCGAA	1 cut(s)	365
AvaII	GGWCC	3 cut(s)	138, 253, 407
BaeGI	GKGCMC	2 cut(s)	125, 318
BalI	TGGCCA	1 cut(s)	278
BanI	GGYRCC	2 cut(s)	120, 315
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	2 cut(s)	190, 457
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	1 cut(s)	291
BcnI	CCSGG	2 cut(s)	313, 411
BisI	GCNGC	2 cut(s)	158, 238
BlsI	GCNGC	2 cut(s)	159, 239
Bme1390I	CCNGG	3 cut(s)	257, 313, 411
Bme18I	GGWCC	3 cut(s)	138, 253, 407
BmgT120I	GGNCC	3 cut(s)	138, 253, 407
BmiI	GGNNCC	6 cut(s)	122, 139, 140, 254, 317, 408
BmrFI	CCNGG	3 cut(s)	257, 313, 411
BmrI	ACTGGG	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	365
BpuMI	CCSGG	2 cut(s)	313, 411
Bsa29I	ATCGAT	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	302, 410
Bse1I	ACTGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	257
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	302, 410
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	94
BseSI	GKGCMC	2 cut(s)	125, 318
BseXI	GCAGC	1 cut(s)	169
BseYI	CCCAGC	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	332
Bsh1285I	CGRYCG	2 cut(s)	146, 428
BshFI	GGCC	2 cut(s)	278, 448
BshNI	GGYRCC	2 cut(s)	120, 315
BshVI	ATCGAT	1 cut(s)	146
BsiEI	CGRYCG	2 cut(s)	146, 428
BsiSI	CCGG	2 cut(s)	312, 410
BslFI	GGGAC	3 cut(s)	151, 205, 427
BsmFI	GGGAC	3 cut(s)	151, 205, 427
BsnI	GGCC	2 cut(s)	278, 448
Bsp119I	TTCGAA	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	125, 318
Bsp143I	GATC	3 cut(s)	143, 147, 291
Bsp68I	TCGCGA	1 cut(s)	332
BspACI	CCGC	2 cut(s)	238, 424
BspANI	GGCC	2 cut(s)	278, 448
BspCNI	CTCAG	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	6 cut(s)	122, 139, 140, 254, 317, 408
BspT104I	TTCGAA	1 cut(s)	365
BspT107I	GGYRCC	2 cut(s)	120, 315
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	302, 410
BssMI	GATC	3 cut(s)	143, 147, 291
BssNI	GRCGYC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	334, 422
BstDEI	CTNAG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	3 cut(s)	146, 150, 294
BstMBI	GATC	3 cut(s)	143, 147, 291
BstMCI	CGRYCG	2 cut(s)	146, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	255, 311, 409
BstSLI	GKGCMC	2 cut(s)	125, 318
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	278, 448
BsuTUI	ATCGAT	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	294
BtuMI	TCGCGA	1 cut(s)	332
Cac8I	GCNNGC	2 cut(s)	334, 422
CciI	TCATGA	1 cut(s)	288
Cfr13I	GGNCC	3 cut(s)	138, 253, 407
ClaI	ATCGAT	1 cut(s)	146
CseI	GACGC	1 cut(s)	45
CviAII	CATG	4 cut(s)	128, 289, 433, 472
CviJI	RGCY	7 cut(s)	208, 237, 263, 278, 285, 448, 466
CviKI_1	RGCY	7 cut(s)	208, 237, 263, 278, 285, 448, 466
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	3 cut(s)	145, 149, 293
DpnII	GATC	3 cut(s)	143, 147, 291
EaeI	YGGCCR	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	3 cut(s)	138, 253, 407
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	4 cut(s)	131, 292, 436, 475
FaiI	YATR	4 cut(s)	129, 290, 434, 473
FaqI	GGGAC	3 cut(s)	151, 205, 427
FatI	CATG	4 cut(s)	127, 288, 432, 471
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	158, 238
Fsp4HI	GCNGC	2 cut(s)	158, 238
GluI	GCNGC	2 cut(s)	158, 238
GsaI	CCCAGC	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	278, 448
HapII	CCGG	2 cut(s)	312, 410
HgaI	GACGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	4 cut(s)	131, 292, 436, 475
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	312, 410
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	6 cut(s)	289, 331, 346, 357, 382, 442
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	19
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	4 cut(s)	131, 292, 436, 475
KflI	GGGWCCC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	143, 147, 291
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	1 cut(s)	169
MalI	GATC	3 cut(s)	145, 149, 293
MboI	GATC	3 cut(s)	143, 147, 291
MboII	GAAGA	1 cut(s)	379
MfeI	CAATTG	1 cut(s)	41
MhlI	GDGCHC	2 cut(s)	125, 318
MlsI	TGGCCA	1 cut(s)	278
MluCI	AATT	7 cut(s)	41, 50, 59, 102, 216, 272, 477
MluNI	TGGCCA	1 cut(s)	278
MnlI	CCTC	4 cut(s)	367, 378, 438, 450
Mox20I	TGGCCA	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	2 cut(s)	215, 476
Msp20I	TGGCCA	1 cut(s)	278
MspI	CCGG	2 cut(s)	312, 410
MspR9I	CCNGG	3 cut(s)	257, 313, 411
MunI	CAATTG	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	73
NciI	CCSGG	2 cut(s)	313, 411
NdeII	GATC	3 cut(s)	143, 147, 291
NlaIII	CATG	4 cut(s)	131, 292, 436, 475
NlaIV	GGNNCC	6 cut(s)	122, 139, 140, 254, 317, 408
NruI	TCGCGA	1 cut(s)	332
NspV	TTCGAA	1 cut(s)	365
PagI	TCATGA	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	159, 239
Ple19I	CGATCG	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	6 cut(s)	122, 139, 140, 254, 317, 408
PspPI	GGNCC	3 cut(s)	138, 253, 407
PspPPI	RGGWCCY	1 cut(s)	138
PvuI	CGATCG	1 cut(s)	146
RruI	TCGCGA	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	215, 476
SatI	GCNGC	2 cut(s)	158, 238
Sau3AI	GATC	3 cut(s)	143, 147, 291
Sau96I	GGNCC	3 cut(s)	138, 253, 407
ScrFI	CCNGG	3 cut(s)	257, 313, 411
SduI	GDGCHC	2 cut(s)	125, 318
SetI	ASST	6 cut(s)	167, 210, 265, 287, 378, 468
SfuI	TTCGAA	1 cut(s)	365
SinI	GGWCC	3 cut(s)	138, 253, 407
Sse9I	AATT	7 cut(s)	41, 50, 59, 102, 216, 272, 477
SsiI	CCGC	2 cut(s)	238, 424
StyD4I	CCNGG	3 cut(s)	255, 311, 409
StyI	CCWWGG	1 cut(s)	302
TaqI	TCGA	2 cut(s)	146, 365
TaqII	GACCGA	1 cut(s)	418
TasI	AATT	7 cut(s)	41, 50, 59, 102, 216, 272, 477
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	215, 476
Tru9I	TTAA	2 cut(s)	215, 476
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	220, 277
TspRI	CASTG	1 cut(s)	301
VpaK11BI	GGWCC	3 cut(s)	138, 253, 407
XapI	RAATTY	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.