Rorug07G0343600

Cytochrome C oxidase, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006521
Physical Location & Seq
Forward (+)
37921605 .. 37923106
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0343600.1

Sequence Viewer

Length: 807 bp
ATGGAGGGAAACGTGACCATCAAGAGTACCTTCCAATACTGGCTGGTTAAGCACCCAACAATCCTCAACTTCAAGTGGAGCCCGGGGGAAACTCCCTGCTCCACTCCACTCTTCCTGGCTGTCACGGTCATCTCTTACCTCGCCTTGACTCTGCTCCTCTCCAACATCCCTCTCCCGCTCATCAAGCCCCGCCGCCTCAAGCCGATCACGGTCGTCCACAACCTCATCCTGCTGGTGTTGTCATTCATCATGTCCGTGGGTTCGTTGGTCACCATCTTCTCCCACGCGCCCTACCCCTTTTGGATCATCTGCCTGCCACCCAAAACTCCGCCAACTGGTCCCCTCTTCTTCTGGGCGTACATCTTCTACCTTTCGAAAATCTACGAGTTCGTCGACACCCTCCTCATCATCGTCAGCGGCTCCTTCCACCGTCTCACCTTCCTCCACGTGTACCACCACACCATGGTGCTTGTCATGTGCTACATCTGGCTCCACACCTCCCAGTCTCTCTTCCCGGCCGTCATCGTCGCGAACGCCACCGTCCACGTGGTCATGTACACTTACTACCTGCTGTCGAGTCTCGGAGGGAGGCCCAAGTGGAAGAGGTTTGTGACGGAGTTTCAGATATTCCAGTTCATGAGCAGCTTCATAGGGTTGGTGTGGATGCTCTACTATCATTTCAACAGGGAGTGTGGTTGCTCTGGGATCTGGGGATGGTGCTTCAACATTTTCTTCTATGTTTCTCTTCTGCTTTTGTTCATGGACTTCCATTCCAAGAGTTATGGTACCTCCAAGAAAGATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

31.16

Weight (kDa)

9.34

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELO PF01151 33 - 266 3.7e-54 GNS1/SUR4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 576
Acc65I GGTACC 1 cut(s) 785
AccB1I GGYRCC 1 cut(s) 785
AccB7I CCANNNNNTGG 1 cut(s) 463
AccBSI CCGCTC 1 cut(s) 178
AccI GTMKAC 1 cut(s) 393
AccII CGCG 2 cut(s) 287, 530
AciI CCGC 5 cut(s) 176, 190, 193, 329, 417
AclWI GGATC 2 cut(s) 311, 713
AcoI YGGCCR 1 cut(s) 516
AcvI CACGTG 2 cut(s) 448, 547
AfaI GTAC 5 cut(s) 28, 359, 452, 557, 787
AfiI CCNNNNNNNGG 2 cut(s) 335, 463
AflIII ACRYGT 1 cut(s) 447
AgsI TTSAA 3 cut(s) 73, 682, 724
AjnI CCWGG 1 cut(s) 114
AjuI GAANNNNNNNTTGG 1 cut(s) 785
AleI CACNNNNGTG 1 cut(s) 464
AluBI AGCT 1 cut(s) 645
AluI AGCT 1 cut(s) 645
Alw26I GTCTC 3 cut(s) 437, 510, 584
AlwI GGATC 2 cut(s) 311, 713
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 2 cut(s) 516, 590
ApeKI GCWGC 1 cut(s) 642
Asp700I GAANNNNTTC 1 cut(s) 800
Asp718I GGTACC 1 cut(s) 785
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 2 cut(s) 338, 591
AsuC2I CCSGG 3 cut(s) 83, 84, 515
AsuHPI GGTGA 2 cut(s) 262, 427
AsuII TTCGAA 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 785
BanII GRGCYC 1 cut(s) 83
BbrPI CACGTG 2 cut(s) 448, 547
BbvI GCAGC 1 cut(s) 654
BccI CCATC 3 cut(s) 26, 281, 708
BceAI ACGGC 1 cut(s) 503
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 3 cut(s) 83, 84, 515
BcoDI GTCTC 3 cut(s) 437, 510, 584
BfaI CTAG 1 cut(s) 805
BfuAI ACCTGC 1 cut(s) 576
BisI GCNGC 3 cut(s) 193, 418, 643
BlsI GCNGC 3 cut(s) 194, 419, 644
Bme1390I CCNGG 4 cut(s) 83, 84, 116, 515
Bme18I GGWCC 1 cut(s) 338
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 338, 591
BmiI GGNNCC 5 cut(s) 80, 340, 421, 491, 787
BmrFI CCNGG 4 cut(s) 83, 84, 116, 515
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 1 cut(s) 654
BmuI ACTGGG 1 cut(s) 496
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 3 cut(s) 83, 84, 515
BsaAI YACGTR 2 cut(s) 448, 547
BsaJI CCNNGG 4 cut(s) 82, 83, 255, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 463
Bse1I ACTGG 4 cut(s) 44, 340, 502, 631
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 4 cut(s) 82, 83, 255, 462
BseGI GGATG 4 cut(s) 165, 225, 669, 719
BseLI CCNNNNNNNGG 2 cut(s) 335, 463
BseNI ACTGG 4 cut(s) 44, 340, 502, 631
BseRI GAGGAG 2 cut(s) 146, 392
BseX3I CGGCCG 1 cut(s) 516
BseXI GCAGC 1 cut(s) 654
Bsh1236I CGCG 2 cut(s) 287, 530
Bsh1285I CGRYCG 2 cut(s) 213, 519
BshFI GGCC 2 cut(s) 518, 592
BshNI GGYRCC 1 cut(s) 785
BsiEI CGRYCG 2 cut(s) 213, 519
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 2 cut(s) 83, 515
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 335, 463
BsmAI GTCTC 3 cut(s) 437, 510, 584
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 2 cut(s) 518, 592
BsoBI CYCGRG 1 cut(s) 82
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 555
Bsp143I GATC 3 cut(s) 204, 303, 705
Bsp19I CCATGG 1 cut(s) 462
Bsp68I TCGCGA 1 cut(s) 530
BspACI CCGC 5 cut(s) 176, 190, 193, 329, 417
BspANI GGCC 2 cut(s) 518, 592
BspFNI CGCG 2 cut(s) 287, 530
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 5 cut(s) 80, 340, 421, 491, 787
BspMI ACCTGC 1 cut(s) 576
BspPI GGATC 2 cut(s) 311, 713
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 785
BsrBI CCGCTC 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 555
BsrI ACTGG 4 cut(s) 44, 340, 502, 631
BssECI CCNNGG 4 cut(s) 82, 83, 255, 462
BssMI GATC 3 cut(s) 204, 303, 705
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 4 cut(s) 127, 211, 431, 541
Bst6I CTCTTC 5 cut(s) 116, 350, 515, 596, 750
BstAUI TGTACA 1 cut(s) 555
BstBAI YACGTR 2 cut(s) 448, 547
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 314
BstDSI CCRYGG 2 cut(s) 255, 462
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 4 cut(s) 165, 225, 669, 719
BstFNI CGCG 2 cut(s) 287, 530
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 3 cut(s) 207, 306, 708
BstMAI GTCTC 3 cut(s) 437, 510, 584
BstMBI GATC 3 cut(s) 204, 303, 705
BstMCI CGRYCG 2 cut(s) 213, 519
BstMWI GCNNNNNNNGC 2 cut(s) 49, 184
BstNI CCWGG 1 cut(s) 116
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 4 cut(s) 81, 82, 114, 513
BstUI CGCG 2 cut(s) 287, 530
BstV1I GCAGC 1 cut(s) 654
BstX2I RGATCY 1 cut(s) 705
BstYI RGATCY 1 cut(s) 705
BstZI CGGCCG 1 cut(s) 516
BsuRI GGCC 2 cut(s) 518, 592
BtgI CCRYGG 2 cut(s) 255, 462
BtsCI GGATG 4 cut(s) 165, 225, 669, 719
BtuMI TCGCGA 1 cut(s) 530
BveI ACCTGC 1 cut(s) 576
Cac8I GCNNGC 1 cut(s) 314
CciI TCATGA 1 cut(s) 636
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 338, 591
Cfr9I CCCGGG 1 cut(s) 82
Csp6I GTAC 5 cut(s) 27, 358, 451, 556, 786
CviAII CATG 6 cut(s) 250, 463, 475, 553, 637, 760
CviQI GTAC 5 cut(s) 27, 358, 451, 556, 786
DpnI GATC 3 cut(s) 206, 305, 707
DpnII GATC 3 cut(s) 204, 303, 705
EaeI YGGCCR 1 cut(s) 516
EagI CGGCCG 1 cut(s) 516
Eam1104I CTCTTC 5 cut(s) 116, 350, 515, 596, 750
EarI CTCTTC 5 cut(s) 116, 350, 515, 596, 750
EciI GGCGGA 1 cut(s) 318
EclXI CGGCCG 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 338
Eco52I CGGCCG 1 cut(s) 516
Eco72I CACGTG 2 cut(s) 448, 547
Eco88I CYCGRG 1 cut(s) 82
Eco91I GGTNACC 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 462
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 6 cut(s) 253, 466, 478, 556, 640, 763
FaiI YATR 9 cut(s) 251, 464, 476, 554, 638, 650, 738, 761, 783
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 1 cut(s) 324
FatI CATG 6 cut(s) 249, 462, 474, 552, 636, 759
FauI CCCGC 2 cut(s) 183, 197
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 193, 418, 643
FokI GGATG 4 cut(s) 152, 212, 676, 726
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 193, 418, 643
FspBI CTAG 1 cut(s) 805
GlaI GCGC 1 cut(s) 288
GluI GCNGC 3 cut(s) 193, 418, 643
HaeIII GGCC 2 cut(s) 518, 592
HapII CCGG 2 cut(s) 83, 515
HhaI GCGC 1 cut(s) 289
Hin1II CATG 6 cut(s) 253, 466, 478, 556, 640, 763
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 2 cut(s) 148, 577
HpaII CCGG 2 cut(s) 83, 515
HphI GGTGA 2 cut(s) 262, 427
Hpy166II GTNNAC 5 cut(s) 217, 394, 451, 544, 558
Hpy188I TCNGA 2 cut(s) 584, 624
Hpy188III TCNNGA 3 cut(s) 22, 529, 637
Hpy8I GTNNAC 5 cut(s) 217, 394, 451, 544, 558
Hpy99I CGWCG 2 cut(s) 395, 530
HpyAV CCTTC 3 cut(s) 40, 433, 448
HpyCH4III ACNGT 4 cut(s) 127, 211, 431, 541
HpyCH4IV ACGT 3 cut(s) 12, 447, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 184
HpySE526I ACGT 3 cut(s) 12, 447, 546
Hsp92II CATG 6 cut(s) 253, 466, 478, 556, 640, 763
HspAI GCGC 1 cut(s) 287
KpnI GGTACC 1 cut(s) 789
Kzo9I GATC 3 cut(s) 204, 303, 705
LmnI GCTCC 5 cut(s) 78, 104, 159, 425, 495
Lsp1109I GCAGC 1 cut(s) 654
LweI GCATC 1 cut(s) 654
MaeI CTAG 1 cut(s) 805
MaeII ACGT 3 cut(s) 12, 447, 546
MaeIII GTNAC 4 cut(s) 13, 121, 268, 610
MalI GATC 3 cut(s) 206, 305, 707
MbiI CCGCTC 1 cut(s) 178
MboI GATC 3 cut(s) 204, 303, 705
MboII GAAGA 9 cut(s) 103, 268, 337, 340, 355, 502, 613, 724, 737
MflI RGATCY 1 cut(s) 705
MhlI GDGCHC 1 cut(s) 83
MlyI GAGTC 2 cut(s) 142, 586
MmeI TCCRAC 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 800
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 2 cut(s) 254, 464
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 2 cut(s) 83, 515
MspR9I CCNGG 4 cut(s) 83, 84, 116, 515
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 2 cut(s) 287, 530
MwoI GCNNNNNNNGC 2 cut(s) 49, 184
NciI CCSGG 3 cut(s) 83, 84, 515
NcoI CCATGG 1 cut(s) 462
NdeII GATC 3 cut(s) 204, 303, 705
NlaIII CATG 6 cut(s) 253, 466, 478, 556, 640, 763
NlaIV GGNNCC 5 cut(s) 80, 340, 421, 491, 787
NmuCI GTSAC 4 cut(s) 13, 121, 268, 610
NruI TCGCGA 1 cut(s) 530
NspV TTCGAA 1 cut(s) 374
OliI CACNNNNGTG 1 cut(s) 464
PagI TCATGA 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 800
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 3 cut(s) 194, 419, 644
PleI GAGTC 2 cut(s) 142, 585
PmaCI CACGTG 2 cut(s) 448, 547
PmlI CACGTG 2 cut(s) 448, 547
PpsI GAGTC 2 cut(s) 142, 585
Ppu21I YACGTR 2 cut(s) 448, 547
Psp6I CCWGG 1 cut(s) 114
PspCI CACGTG 2 cut(s) 448, 547
PspEI GGTNACC 1 cut(s) 268
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 5 cut(s) 80, 340, 421, 491, 787
PspPI GGNCC 2 cut(s) 338, 591
PsuI RGATCY 1 cut(s) 705
RruI TCGCGA 1 cut(s) 530
RsaI GTAC 5 cut(s) 28, 359, 452, 557, 787
RsaNI GTAC 5 cut(s) 27, 358, 451, 556, 786
RseI CAYNNNNRTG 2 cut(s) 254, 464
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 193, 418, 643
Sau3AI GATC 3 cut(s) 204, 303, 705
Sau96I GGNCC 2 cut(s) 338, 591
SchI GAGTC 2 cut(s) 142, 586
ScrFI CCNGG 4 cut(s) 83, 84, 116, 515
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 1 cut(s) 654
SfuI TTCGAA 1 cut(s) 374
SinI GGWCC 1 cut(s) 338
SmaI CCCGGG 1 cut(s) 84
SmiMI CAYNNNNRTG 2 cut(s) 254, 464
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SsiI CCGC 5 cut(s) 176, 190, 193, 329, 417
SspMI CTAG 1 cut(s) 805
StyD4I CCNGG 4 cut(s) 81, 82, 114, 513
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 4 cut(s) 127, 211, 431, 541
TaiI ACGT 3 cut(s) 15, 450, 549
TaqI TCGA 3 cut(s) 374, 393, 575
TatI WGTACW 1 cut(s) 555
TauI GCSGC 2 cut(s) 195, 420
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 4 cut(s) 13, 121, 268, 610
TseI GCWGC 1 cut(s) 642
Tsp45I GTSAC 4 cut(s) 13, 121, 268, 610
TspDTI ATGAA 4 cut(s) 235, 625, 637, 748
TspGWI ACGGA 2 cut(s) 244, 629
TspMI CCCGGG 1 cut(s) 82
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XmaI CCCGGG 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.