Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006521

Physical Location & Seq

Genomic Coordinates Forward (+)

68739766 .. 68760532

Gene Structure 20767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG482900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACTGTCGTCGAAATTCTCATTGTCGGAGGACGAGGCTTCCAGGTCGATGGGCACGGCGGAGGAGATTCTCTCCCCGGACTCGAAGAAGCGGTCATCGTCTTCTTCGTTGTGGAGGTCGTCCTAGTTCATAATGATAGTCCTCTTCCGCTCCATGGTCATCTTGTTGCATTTCTGGGCGATCGGGCTCTACTGAAAGCCCCAATTGGTGGATTCACAATCTCTCTCTCTGTCCTGCTTTTCAATCTCATCAGATTAAGTGAAATGGCTGGTCACAAGATTGCTCATGCCACATTGAAGGGGCCAAGCGTTGTCAAGGAGATAGTTATTGGGGCGGTGCTTGGTTTGGCTGCTGGAGGCCTTTGGAAAATGCATCACTGGAATGAGCAGAGGAAAATAAGGACATTCTATGACTTGCTGGAGAAAGTCAGCCTCTTCAGTTGTCCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.11

Weight (kDa)

6.7

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47380 AT2G47380 AT3G62400 AT5G61310 AT5G61310 AT5G61310 AT5G61310 AT5G61310 AT5G61310
fragaria_vesca	FvH4_5g39150
pyrus_communis	pycom12g14930
rosa_chinensis	RchiOBHm_Chr5g0055711 RchiOBHm_Chr7g0241161 RchiOBHm_Chr7g0241221
rosa_laevigata	RLG00000000590
rosa_multiflora	Rmu_co8373035.1_g000001 Rmu_sc0006665.1_g000002 Rmu_sc0033176.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219220
rosa_rugosa	Rorug07G0343600
rosa_samantha	Rh5CG398900 Rh7AG498200 Rh7CG515000 Rh7DG482900
rosa_wichuraiana	Rw5G020270 Rw7G042020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	151
AciI	CCGC	4 cut(s)	60, 92, 149, 335
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	421
AfiI	CCNNNNNNNGG	2 cut(s)	155, 209
AgsI	TTSAA	2 cut(s)	244, 298
AjnI	CCWGG	1 cut(s)	42
AoxI	GGCC	2 cut(s)	302, 358
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	15
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	44
BcnI	CCSGG	1 cut(s)	78
BfaI	CTAG	1 cut(s)	125
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	44, 78
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	2 cut(s)	44, 78
BmsI	GCATC	1 cut(s)	382
BoxI	GACNNNNGTC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	57, 89
BpmI	CTGGAG	2 cut(s)	375, 440
BpuMI	CCSGG	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	76, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 209
Bse1I	ACTGG	1 cut(s)	383
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	76, 154
BseLI	CCNNNNNNNGG	2 cut(s)	155, 209
BseNI	ACTGG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	337
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	2 cut(s)	304, 360
BsiEI	CGRYCG	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	78, 446
BslI	CCNNNNNNNGG	2 cut(s)	155, 209
BsnI	GGCC	2 cut(s)	304, 360
Bsp1286I	GDGCHC	2 cut(s)	57, 190
Bsp143I	GATC	1 cut(s)	181
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	4 cut(s)	60, 92, 149, 335
BspANI	GGCC	2 cut(s)	304, 360
BspLI	GGNNCC	1 cut(s)	303
BsrBI	CCGCTC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	76, 154
BssMI	GATC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	2 cut(s)	150, 440
BstDSI	CCRYGG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMCI	CGRYCG	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	44
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	42, 76
BstSLI	GKGCMC	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	337
BstV2I	GAAGAC	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	304, 360
BtgI	CCRYGG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	302
CviAII	CATG	2 cut(s)	155, 287
CviJI	RGCY	8 cut(s)	39, 188, 200, 269, 304, 350, 360, 432
CviKI_1	RGCY	8 cut(s)	39, 188, 200, 269, 304, 350, 360, 432
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	150, 440
EarI	CTCTTC	2 cut(s)	150, 440
EciI	GGCGGA	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	2 cut(s)	158, 290
FaiI	YATR	5 cut(s)	132, 156, 288, 411, 451
FatI	CATG	2 cut(s)	154, 286
Fnu4HI	GCNGC	1 cut(s)	351
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	1 cut(s)	351
GsuI	CTGGAG	2 cut(s)	375, 440
HaeIII	GGCC	2 cut(s)	304, 360
HapII	CCGG	2 cut(s)	78, 446
Hin1II	CATG	2 cut(s)	158, 290
HinfI	GANTC	3 cut(s)	68, 81, 213
HpaII	CCGG	2 cut(s)	78, 446
Hpy188I	TCNGA	2 cut(s)	29, 254
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	170, 373
Hsp92II	CATG	2 cut(s)	158, 290
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	9 cut(s)	29, 56, 91, 161, 248, 255, 339, 364, 404
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	1 cut(s)	183
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	1 cut(s)	181
MboII	GAAGA	5 cut(s)	94, 97, 98, 137, 427
MfeI	CAATTG	1 cut(s)	204
MhlI	GDGCHC	2 cut(s)	57, 190
MluCI	AATT	2 cut(s)	15, 204
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	8 cut(s)	23, 29, 56, 109, 153, 350, 384, 443
Mph1103I	ATGCAT	1 cut(s)	375
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	2 cut(s)	78, 446
MspR9I	CCNGG	2 cut(s)	44, 78
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	44
NciI	CCSGG	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	158, 290
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	375
PceI	AGGCCT	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	68, 213
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	352
Ple19I	CGATCG	1 cut(s)	184
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
PshAI	GACNNNNGTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	302
PvuI	CGATCG	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	44, 78
SduI	GDGCHC	2 cut(s)	57, 190
SetI	ASST	2 cut(s)	48, 120
SfaNI	GCATC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	2 cut(s)	15, 204
SseBI	AGGCCT	1 cut(s)	360
SsiI	CCGC	4 cut(s)	60, 92, 149, 335
SspMI	CTAG	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	42, 76
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	3 cut(s)	12, 48, 84
TasI	AATT	2 cut(s)	15, 204
TfiI	GAWTC	2 cut(s)	68, 213
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	383
Van91I	CCANNNNNTGG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	15
XspI	CTAG	1 cut(s)	125
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.