pycom12g16840

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
19121986 .. 19122574
589 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g16840.1

Sequence Viewer

Length: 354 bp
ATGGAGAGGAGGGGGGGAAGGAATAGGAGCCATGTCAAGATGGTGGGTTGGAAGACCTGGATTTGCTTCAAGCAATCCTTCCTCCTCCCTACTAAGTGCTTCCTTCTCAAGCTTACTTCACATTCAAGGCACAAATCCAAAGGAAATGGGCATGGATTGGTGAGCTTGTACGAAGACATGGAGTCTTGTGGGGAATATGAAGATATAAGAGTTATGTGGGAGATTATTCACTCTTGTCAACAGAATGCAAACAACACTACAACGAGGAGGAAGAGGTCGTCTTCTTATTGGAGATTCTGTCTTCAGCCACATAAGTTGTGTCCTTCCTTTTCAAAAGACTTGGCTTTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.76

Weight (kDa)

9.77

Isoelectric Point (pI)

63.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017686)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10780
malus_domestica MD12G1178400.v1.1
prunus_persica Prupe.6G283600_v2.0.a1
pyrus_communis pycom12g16840
rosa_chinensis RchiOBHm_Chr3g0461821
rosa_laevigata RLG00000024895
rosa_multiflora Rmu_sc0004308.1_g000014
rosa_roxburghii Rroxscaffold_6G00417890
rosa_rugosa Rorug03G0053900
rosa_samantha Rh3AG112000 Rh3BG115300 Rh3DG117000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 3 cut(s) 70, 126, 333
AhdI GACNNNNNGTC 1 cut(s) 181
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 2 cut(s) 112, 165
AluI AGCT 2 cut(s) 112, 165
ArsI GACNNNNNNTTYG 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 172
BbsI GAAGAC 4 cut(s) 59, 180, 273, 293
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 58
BmeRI GACNNNNNGTC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 58
BpiI GAAGAC 4 cut(s) 59, 180, 273, 293
BpuEI CTTGAG 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
BseBI CCWGG 1 cut(s) 58
BseRI GAGGAG 3 cut(s) 22, 74, 280
BsmI GAATGC 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 58
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 93
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstV2I GAAGAC 4 cut(s) 59, 180, 273, 293
Csp6I GTAC 1 cut(s) 169
CspCI CAANNNNNGTGG 2 cut(s) 297, 332
CviAII CATG 3 cut(s) 32, 152, 178
CviJI RGCY 6 cut(s) 30, 112, 165, 307, 344, 351
CviKI_1 RGCY 6 cut(s) 30, 112, 165, 307, 344, 351
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 93
DriI GACNNNNNGTC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 266
Eam1105I GACNNNNNGTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 3 cut(s) 35, 155, 181
FaiI YATR 7 cut(s) 33, 153, 179, 198, 206, 215, 312
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 3 cut(s) 31, 151, 177
Hin1II CATG 3 cut(s) 35, 155, 181
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 2 cut(s) 182, 294
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 239
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 4 cut(s) 12, 88, 113, 333
HpyCH4V TGCA 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 3 cut(s) 35, 155, 181
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 2 cut(s) 43, 70
MboII GAAGA 6 cut(s) 64, 185, 212, 273, 283, 293
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 29
MnlI CCTC 6 cut(s) 3, 92, 95, 258, 261, 267
MspR9I CCNGG 1 cut(s) 58
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 1 cut(s) 58
NlaIII CATG 3 cut(s) 35, 155, 181
NlaIV GGNNCC 1 cut(s) 29
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 294
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 29
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 58
SetI ASST 4 cut(s) 59, 114, 167, 278
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 56
TfiI GAWTC 1 cut(s) 294
TspDTI ATGAA 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.