Rorug03G0053900

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003525
Physical Location & Seq
Forward (+)
4178512 .. 4181560
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0053900.1

Sequence Viewer

Length: 387 bp
ATGCATTCTTTTGGGTACAGAGCCAATGCTTTGCTCACCTTCGCGGTCACAATTCTCGCCCTCATGTGCGCCATGGCCTCCATGTCTGACAATTTCAACACCCCATCTCCCACTTCTCAAGTCCAGGTGCTGAATATCAATTGGTTTCAGAAGCAACCAAATGGGAACGACGAGGTCAGCATGACACTGAATATATCAGCAGACTTGCAGTCATTGTTTACATGGAACACAAAGCAGGTTTTTGTTTTTCTAGCTGCTGAGTATGAAACCCCGAAGAACGCATTGAATCAGTGCTATTTTACAGGTCTCTCTTTGGGATGGTATCATACCTTCCCAAGAGCATGCCAAGTTTTGGATTCATACTTCAAACAAATACCGCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04216 ko04217 ko04978 map04216 map04217 map04978
Pfam Domains
Protein Families
Ferritin

Protein Analysis

128

Amino Acids

14.49

Weight (kDa)

6.01

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPC22 PF04573 1 - 99 4.1e-30 Signal peptidase subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 226
AccB7I CCANNNNNTGG 1 cut(s) 352
AccII CGCG 1 cut(s) 44
AciI CCGC 2 cut(s) 44, 377
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 3 cut(s) 97, 286, 367
AhdI GACNNNNNGTC 1 cut(s) 208
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 130
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 28
BarI GAAGNNNNNNTAC 2 cut(s) 314, 346
BbvI GCAGC 1 cut(s) 241
BccI CCATC 2 cut(s) 112, 312
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 125
BmeRI GACNNNNNGTC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 249
BseXI GCAGC 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 4
BsnI GGCC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 311
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 2 cut(s) 44, 377
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 250
BspFNI CGCG 1 cut(s) 44
BspMI ACCTGC 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 323
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 323
BtsIMutI CAGTG 2 cut(s) 185, 296
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 130
CfoI GCGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 16
CviAII CATG 6 cut(s) 64, 73, 82, 181, 222, 342
CviJI RGCY 3 cut(s) 23, 77, 254
CviKI_1 RGCY 3 cut(s) 23, 77, 254
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 1 cut(s) 258
DriI GACNNNNNGTC 1 cut(s) 208
Eam1105I GACNNNNNGTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 72
Eco31I GGTCTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 6 cut(s) 67, 76, 85, 184, 225, 345
FatI CATG 6 cut(s) 63, 72, 81, 180, 221, 341
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 77
HhaI GCGC 1 cut(s) 71
Hin1II CATG 6 cut(s) 67, 76, 85, 184, 225, 345
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 2 cut(s) 286, 356
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 2 cut(s) 88, 150
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 49, 340
HpyCH4V TGCA 2 cut(s) 4, 208
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 6 cut(s) 67, 76, 85, 184, 225, 345
HspAI GCGC 1 cut(s) 69
LpnPI CCDG 4 cut(s) 110, 137, 221, 288
Lsp1109I GCAGC 1 cut(s) 241
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 46
MboII GAAGA 1 cut(s) 286
MfeI CAATTG 1 cut(s) 139
MluCI AATT 3 cut(s) 51, 91, 139
MnlI CCTC 3 cut(s) 71, 88, 166
Mph1103I ATGCAT 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 139
Mva1269I GAATGC 1 cut(s) 4
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 72
NlaIII CATG 6 cut(s) 67, 76, 85, 184, 225, 345
NmuCI GTSAC 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 345
PaeI GCATGC 1 cut(s) 345
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 2 cut(s) 286, 356
PflFI GACNNNGTC 1 cut(s) 173
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PstNI CAGNNNCTG 1 cut(s) 130
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SatI GCNGC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 125
SetI ASST 7 cut(s) 41, 129, 177, 240, 256, 307, 332
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
SphI GCATGC 1 cut(s) 345
Sse9I AATT 3 cut(s) 51, 91, 139
SsiI CCGC 2 cut(s) 44, 377
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 72
TasI AATT 3 cut(s) 51, 91, 139
TfiI GAWTC 2 cut(s) 286, 356
TscAI CASTG 2 cut(s) 192, 296
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 279, 348
TspRI CASTG 2 cut(s) 192, 296
Tth111I GACNNNGTC 1 cut(s) 173
Van91I CCANNNNNTGG 1 cut(s) 352
XceI RCATGY 1 cut(s) 345
XspI CTAG 1 cut(s) 251
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.