pycom12g16850

Ferritin-4, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0003525
Physical Location & Seq
Reverse (-)
19123045 .. 19125201
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g16850.1

Sequence Viewer

Length: 978 bp
ATGAGAGACGGGAATAACAAAAGGACAAATTTGCGACCCTTCTGCGATTGCAACGTGGAACGGAAAGTACCCTCTCACATTTCCTCAGCGTTCTCCAATTCCTCTGCAATTTCCAGTCCAGATTCTTGTTCAAACTCTCTTCTTTCCAATCACCCGTTCGAGATAATCCGATCGAAAACCATGTCGACGATGTCTCTGAGGGCCATTTCGACGTTTTCCGTCCCATCCAAGCTAGGGGACCAAGGCGGTGCTGTTAGCACCCTCTTGTCCAACTCAAAACTTGGATCATCCTCTTCTGCTCTGAGCTTTAAACAGCAGCGAAAACTCGAAAAGTTTGCGGTTTCTGCATCAAGCGAAGCAGTGGCGTTGACCGGAGTCGTGTTCCAGCCGTTTGAGGAGGTGAAGAACGGTGCTTTTGTTGTCCCTGTGTCTCCTCAGGTCTCTCTTGCCCGTCAGCGTTACACAGATGAGTCCGAGGCCGCCATCAATGAGCAGATCAATGTGGAATACAATGTGTCGTATGTGTACCATGCACTGTTTGCGTACTTTGACAGGGACAACGTTGCTCTCAAGGGCCTTGCCAAGTTTTTCAAGGAATCAAGCGAGGAAGAAAGAGAACATGCCGAAAAGCTGATGGAATATCAGAACAAGCGAGGTGGGAGAGTGAAACTGCACTCTGTAATCGCGGCGCCTACGGAGTTTGATCATGCAGAAAAGGGAGATGCATTGTATGCTATGGAGTTAGCCTTGTCTTTGGAGAAGCTGACAAATGAAAAACTCTTGAACTTGCATAAGGTTGCAGACCAGAACAATGATCCCCAGTTGATGGATTTTATCGAGAGCGAGTTTCTGGCTGAGCAGGTTGAGGCCATCAAGAAGATAGCTGACTATGTCACTCAACTGAGGAGGGTTGGAAAAGGCCATGGAGTGTGGCACTTTGACCAGTATCTCCTTCATGAGGGTGATGCTGCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04216 ko04217 ko04978 map04216 map04217 map04978
Pfam Domains
Protein Families
Ferritin

Protein Analysis

326

Amino Acids

36.15

Weight (kDa)

6.09

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 160 - 304 5.1e-35 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 850
AccB1I GGYRCC 1 cut(s) 688
AccB7I CCANNNNNTGG 1 cut(s) 826
AccI GTMKAC 1 cut(s) 185
AccII CGCG 1 cut(s) 686
AciI CCGC 4 cut(s) 246, 338, 480, 686
AclI AACGTT 1 cut(s) 561
AclWI GGATC 2 cut(s) 292, 809
AcsI RAATTY 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 689
AfaI GTAC 3 cut(s) 69, 527, 545
AfiI CCNNNNNNNGG 3 cut(s) 234, 826, 958
AgsI TTSAA 3 cut(s) 132, 592, 784
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 5 cut(s) 232, 306, 631, 763, 884
AluI AGCT 5 cut(s) 232, 306, 631, 763, 884
Alw26I GTCTC 3 cut(s) 198, 435, 445
AlwI GGATC 2 cut(s) 292, 809
AoxI GGCC 5 cut(s) 201, 477, 574, 867, 919
ApeKI GCWGC 2 cut(s) 316, 968
ApoI RAATTY 1 cut(s) 28
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AspLEI GCGC 1 cut(s) 691
AspS9I GGNCC 3 cut(s) 201, 238, 574
AsuHPI GGTGA 3 cut(s) 143, 412, 974
AvaII GGWCC 1 cut(s) 238
AxyI CCTNAGG 1 cut(s) 435
BanI GGYRCC 1 cut(s) 688
BbvCI CCTCAGC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 328, 955
BccI CCATC 5 cut(s) 232, 491, 628, 820, 878
BceAI ACGGC 1 cut(s) 373
BcgI CGANNNNNNTGC 4 cut(s) 24, 58, 317, 351
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 3 cut(s) 198, 435, 445
BfaI CTAG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 692
BfuAI ACCTGC 1 cut(s) 850
BisI GCNGC 4 cut(s) 317, 480, 687, 969
BlpI GCTNAGC 1 cut(s) 855
BlsI GCNGC 4 cut(s) 318, 481, 688, 970
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 3 cut(s) 201, 238, 574
BmiI GGNNCC 2 cut(s) 239, 690
BmrI ACTGGG 1 cut(s) 814
BmsI GCATC 3 cut(s) 356, 712, 955
BmuI ACTGGG 1 cut(s) 814
BoxI GACNNNNGTC 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 85
Bpu1102I GCTNAGC 1 cut(s) 855
BpuEI CTTGAG 1 cut(s) 554
BsaHI GRCGYC 1 cut(s) 689
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 3 cut(s) 241, 474, 922
BsaWI WCCGGW 1 cut(s) 371
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 826, 958
Bse1I ACTGG 3 cut(s) 114, 820, 943
Bse21I CCTNAGG 1 cut(s) 435
BseDI CCNNGG 3 cut(s) 241, 474, 922
BseGI GGATG 2 cut(s) 224, 287
BseLI CCNNNNNNNGG 3 cut(s) 234, 826, 958
BseMII CTCAG 6 cut(s) 99, 188, 293, 449, 846, 893
BseNI ACTGG 3 cut(s) 114, 820, 943
BseRI GAGGAG 3 cut(s) 410, 423, 919
BseXI GCAGC 2 cut(s) 328, 955
BsgI GTGCAG 1 cut(s) 656
Bsh1236I CGCG 1 cut(s) 686
Bsh1285I CGRYCG 1 cut(s) 173
BshFI GGCC 5 cut(s) 203, 479, 576, 869, 921
BshNI GGYRCC 1 cut(s) 688
BsiEI CGRYCG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 372
BslFI GGGAC 4 cut(s) 206, 251, 407, 569
BslI CCNNNNNNNGG 3 cut(s) 234, 826, 958
BsmAI GTCTC 3 cut(s) 198, 435, 445
BsmFI GGGAC 4 cut(s) 206, 251, 407, 569
BsnI GGCC 5 cut(s) 203, 479, 576, 869, 921
Bso31I GGTCTC 1 cut(s) 445
Bsp143I GATC 5 cut(s) 170, 284, 495, 703, 814
Bsp1720I GCTNAGC 1 cut(s) 855
Bsp19I CCATGG 1 cut(s) 922
BspACI CCGC 4 cut(s) 246, 338, 480, 686
BspANI GGCC 5 cut(s) 203, 479, 576, 869, 921
BspCNI CTCAG 6 cut(s) 98, 189, 294, 448, 847, 894
BspFNI CGCG 1 cut(s) 686
BspHI TCATGA 1 cut(s) 955
BspLI GGNNCC 2 cut(s) 239, 690
BspMI ACCTGC 1 cut(s) 850
BspPI GGATC 2 cut(s) 292, 809
BspT107I GGYRCC 1 cut(s) 688
BspTNI GGTCTC 1 cut(s) 445
BsrI ACTGG 3 cut(s) 114, 820, 943
BssECI CCNNGG 3 cut(s) 241, 474, 922
BssMI GATC 5 cut(s) 170, 284, 495, 703, 814
BssNI GRCGYC 1 cut(s) 689
BssT1I CCWWGG 2 cut(s) 241, 922
Bst4CI ACNGT 2 cut(s) 410, 537
Bst6I CTCTTC 2 cut(s) 144, 298
BstACI GRCGYC 1 cut(s) 689
BstAPI GCANNNNNTGC 2 cut(s) 539, 731
BstDEI CTNAG 6 cut(s) 85, 197, 302, 435, 855, 902
BstDSI CCRYGG 1 cut(s) 922
BstENI CCTNNNNNAGG 1 cut(s) 956
BstF5I GGATG 2 cut(s) 224, 287
BstFNI CGCG 1 cut(s) 686
BstH2I RGCGCY 1 cut(s) 692
BstHHI GCGC 1 cut(s) 691
BstKTI GATC 5 cut(s) 173, 287, 498, 706, 817
BstMAI GTCTC 3 cut(s) 198, 435, 445
BstMBI GATC 5 cut(s) 170, 284, 495, 703, 814
BstMCI CGRYCG 1 cut(s) 173
BstMWI GCNNNNNNNGC 3 cut(s) 344, 539, 731
BstNSI RCATGY 1 cut(s) 623
BstPAI GACNNNNGTC 1 cut(s) 374
BstUI CGCG 1 cut(s) 686
BstV1I GCAGC 2 cut(s) 328, 955
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 5 cut(s) 203, 479, 576, 869, 921
BtgI CCRYGG 1 cut(s) 922
BtsCI GGATG 2 cut(s) 224, 287
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 366, 533
BveI ACCTGC 1 cut(s) 850
CciI TCATGA 1 cut(s) 955
CfoI GCGC 1 cut(s) 691
Cfr13I GGNCC 3 cut(s) 201, 238, 574
Csp6I GTAC 3 cut(s) 68, 526, 544
CspCI CAANNNNNGTGG 2 cut(s) 637, 672
CviAII CATG 6 cut(s) 181, 530, 620, 707, 923, 956
CviQI GTAC 3 cut(s) 68, 526, 544
DdeI CTNAG 6 cut(s) 85, 197, 302, 435, 855, 902
DinI GGCGCC 1 cut(s) 690
DpnI GATC 5 cut(s) 172, 286, 497, 705, 816
DpnII GATC 5 cut(s) 170, 284, 495, 703, 814
DraI TTTAAA 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 144, 298
EarI CTCTTC 2 cut(s) 144, 298
Eco130I CCWWGG 2 cut(s) 241, 922
Eco31I GGTCTC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 435
EcoNI CCTNNNNNAGG 1 cut(s) 956
EcoO109I RGGNCCY 1 cut(s) 574
EcoT14I CCWWGG 2 cut(s) 241, 922
EcoT22I ATGCAT 1 cut(s) 727
EgeI GGCGCC 1 cut(s) 690
EheI GGCGCC 1 cut(s) 690
ErhI CCWWGG 2 cut(s) 241, 922
FaeI CATG 6 cut(s) 184, 533, 623, 710, 926, 959
FaqI GGGAC 4 cut(s) 206, 251, 407, 569
FatI CATG 6 cut(s) 180, 529, 619, 706, 922, 955
FbaI TGATCA 1 cut(s) 703
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 4 cut(s) 317, 480, 687, 969
FokI GGATG 2 cut(s) 211, 274
Fsp4HI GCNGC 4 cut(s) 317, 480, 687, 969
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 690
GluI GCNGC 4 cut(s) 317, 480, 687, 969
HaeII RGCGCY 1 cut(s) 692
HaeIII GGCC 5 cut(s) 203, 479, 576, 869, 921
HapII CCGG 1 cut(s) 372
HhaI GCGC 1 cut(s) 691
Hin1I GRCGYC 1 cut(s) 689
Hin1II CATG 6 cut(s) 184, 533, 623, 710, 926, 959
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HincII GTYRAC 2 cut(s) 186, 369
HindII GTYRAC 2 cut(s) 186, 369
HinfI GANTC 4 cut(s) 122, 375, 470, 596
HpaII CCGG 1 cut(s) 372
HphI GGTGA 3 cut(s) 143, 412, 974
Hpy166II GTNNAC 3 cut(s) 186, 369, 526
Hpy188I TCNGA 5 cut(s) 170, 198, 303, 475, 645
Hpy188III TCNNGA 6 cut(s) 119, 160, 781, 838, 874, 956
Hpy8I GTNNAC 3 cut(s) 186, 369, 526
Hpy99I CGWCG 2 cut(s) 190, 214
HpyAV CCTTC 2 cut(s) 49, 962
HpyCH4III ACNGT 2 cut(s) 410, 537
HpyCH4IV ACGT 3 cut(s) 54, 212, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 539, 731
HpyF3I CTNAG 6 cut(s) 85, 197, 302, 435, 855, 902
HpySE526I ACGT 3 cut(s) 54, 212, 561
Hsp92I GRCGYC 1 cut(s) 689
Hsp92II CATG 6 cut(s) 184, 533, 623, 710, 926, 959
HspAI GCGC 1 cut(s) 689
KasI GGCGCC 1 cut(s) 688
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 5 cut(s) 170, 284, 495, 703, 814
Lsp1109I GCAGC 2 cut(s) 328, 955
LweI GCATC 3 cut(s) 356, 712, 955
MaeI CTAG 1 cut(s) 233
MaeII ACGT 3 cut(s) 54, 212, 561
MaeIII GTNAC 2 cut(s) 458, 892
MalI GATC 5 cut(s) 172, 286, 497, 705, 816
MboI GATC 5 cut(s) 170, 284, 495, 703, 814
MboII GAAGA 5 cut(s) 131, 285, 415, 620, 889
MluCI AATT 3 cut(s) 28, 97, 108
Mly113I GGCGCC 1 cut(s) 689
MlyI GAGTC 2 cut(s) 384, 479
MmeI TCCRAC 2 cut(s) 294, 892
Mph1103I ATGCAT 1 cut(s) 727
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 960
MspI CCGG 1 cut(s) 372
MvnI CGCG 1 cut(s) 686
MwoI GCNNNNNNNGC 3 cut(s) 344, 539, 731
NarI GGCGCC 1 cut(s) 689
NcoI CCATGG 1 cut(s) 922
NdeII GATC 5 cut(s) 170, 284, 495, 703, 814
NlaIII CATG 6 cut(s) 184, 533, 623, 710, 926, 959
NlaIV GGNNCC 2 cut(s) 239, 690
NmuCI GTSAC 1 cut(s) 892
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 1 cut(s) 623
PagI TCATGA 1 cut(s) 955
PfeI GAWTC 2 cut(s) 122, 596
PflFI GACNNNGTC 2 cut(s) 190, 890
PflMI CCANNNNNTGG 1 cut(s) 826
PkrI GCNGC 4 cut(s) 318, 481, 688, 970
Ple19I CGATCG 1 cut(s) 173
PleI GAGTC 2 cut(s) 383, 478
PluTI GGCGCC 1 cut(s) 692
PpsI GAGTC 2 cut(s) 383, 478
PshAI GACNNNNGTC 1 cut(s) 374
Psp1406I AACGTT 1 cut(s) 561
PspN4I GGNNCC 2 cut(s) 239, 690
PspPI GGNCC 3 cut(s) 201, 238, 574
PsrI GAACNNNNNNTAC 2 cut(s) 51, 83
PsyI GACNNNGTC 2 cut(s) 190, 890
PvuI CGATCG 1 cut(s) 173
RsaI GTAC 3 cut(s) 69, 527, 545
RsaNI GTAC 3 cut(s) 68, 526, 544
RseI CAYNNNNRTG 1 cut(s) 960
SalI GTCGAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 4 cut(s) 317, 480, 687, 969
Sau3AI GATC 5 cut(s) 170, 284, 495, 703, 814
Sau96I GGNCC 3 cut(s) 201, 238, 574
SchI GAGTC 2 cut(s) 384, 479
SfaNI GCATC 3 cut(s) 356, 712, 955
SfoI GGCGCC 1 cut(s) 690
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 3 cut(s) 28, 97, 108
SsiI CCGC 4 cut(s) 246, 338, 480, 686
SspDI GGCGCC 1 cut(s) 688
SspMI CTAG 1 cut(s) 233
StyI CCWWGG 2 cut(s) 241, 922
TaaI ACNGT 2 cut(s) 410, 537
TaiI ACGT 3 cut(s) 57, 215, 564
TaqI TCGA 6 cut(s) 159, 173, 185, 209, 327, 837
TasI AATT 3 cut(s) 28, 97, 108
TauI GCSGC 2 cut(s) 482, 689
TfiI GAWTC 2 cut(s) 122, 596
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 2 cut(s) 366, 540
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 2 cut(s) 316, 968
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 2 cut(s) 786, 944
TspGWI ACGGA 3 cut(s) 76, 208, 710
TspRI CASTG 2 cut(s) 366, 540
Tth111I GACNNNGTC 2 cut(s) 190, 890
Van91I CCANNNNNTGG 1 cut(s) 826
VpaK11BI GGWCC 1 cut(s) 238
XagI CCTNNNNNAGG 1 cut(s) 956
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 185
XspI CTAG 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.