Rroxscaffold_6G00417900

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003525
Physical Location & Seq
Reverse (-)
39470011 .. 39472422
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417900.1

Sequence Viewer

Length: 816 bp
ATGGCAATGTCTGCGAGGAGTGTTTCGAGTCTTTTGGTCTCGAGCAAGCAAGGGGATGGTGGTGCTGGCTTTAGCAGCAGCAGCAGCCTCTTGTTGAAGGGCTCAAAACTTGGATCTTCTTCCTCTTCTGGTCTGAGTTTTAATCAGCAGAGAAAACCCAGAAACCTTGTGGTTTCTGCGTTGAACGAGACGGTGCTGACTGGTGTTGTGTTCCAACCATTTGAAGAGGTCAAGAAGGAGGTTCTTGCTGTTCCTGTGGCACATAATGTTTCGCTTGCTCGGCAGTGTTTTGCAGATGAGTGTGAAGCTGCGATAAACGAGCAGATCAATGTGGAATACAATGTGTCGTATGTGTACCATTCCATGTTTGCATATTTTGACAGGGATAATGTTGCTCTTAGGGGCATGGCCAAGTTTTACAAGGAATCAAGTGAGGAAGAAAGAGAGCATGCTGAAAAACTGATGAAATATCAGAATATACGTGGTGGAAGAGTAAAGCTACACTCTATTATAAATCCCCCTTCAGAATTTGAGCATGTTGAGAAGGGAGATGCTTTGTATGCTATGGAGTTAGCTTTGTCTTTGGAGAAGCTGACAAATGAAAAGCTTTTGAGTTTGCATAGGGTGGCAGAGGAGAACAATGATGCTCAAATGACAGAGTTTGTCGAGAGGGAGTTTCTTAGTGAGCAGGTTGAAGCCATTAAGAAGATAGCTGAGTATGTCACCCAGTTGAGGATGGTTGGAAAAGGACATGGAGTGTGGCACTTTGATCAACAGCTCCTTCATCAAGAGGAGATGCTGCATCTTGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04216 ko04217 ko04978 map04216 map04217 map04978
Pfam Domains
Protein Families
Ferritin

Protein Analysis

271

Amino Acids

30.4

Weight (kDa)

5.73

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 103 - 246 8e-32 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
Acc36I ACCTGC 1 cut(s) 679
AclWI GGATC 1 cut(s) 121
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 1 cut(s) 732
AgsI TTSAA 4 cut(s) 97, 184, 224, 695
AluBI AGCT 7 cut(s) 308, 499, 575, 592, 607, 713, 778
AluI AGCT 7 cut(s) 308, 499, 575, 592, 607, 713, 778
Alw26I GTCTC 2 cut(s) 43, 182
AlwI GGATC 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 1 cut(s) 408
ApeKI GCWGC 6 cut(s) 75, 78, 81, 84, 308, 799
ApoI RAATTY 1 cut(s) 527
AsuHPI GGTGA 1 cut(s) 715
AvaI CYCGRG 1 cut(s) 40
BalI TGGCCA 1 cut(s) 410
BanII GRGCYC 1 cut(s) 104
BbvI GCAGC 6 cut(s) 87, 90, 93, 96, 295, 786
BccI CCATC 2 cut(s) 50, 730
BclI TGATCA 1 cut(s) 769
BcoDI GTCTC 2 cut(s) 43, 182
BfuAI ACCTGC 1 cut(s) 679
BisI GCNGC 6 cut(s) 76, 79, 82, 85, 309, 800
BlsI GCNGC 6 cut(s) 77, 80, 83, 86, 310, 801
BmeT110I CYCGRG 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 721
BmsI GCATC 4 cut(s) 541, 634, 786, 811
BmuI ACTGGG 1 cut(s) 721
BsaAI YACGTR 1 cut(s) 482
BsaI GGTCTC 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 732
Bse1I ACTGG 2 cut(s) 205, 727
Bse3DI GCAATG 1 cut(s) 12
BseGI GGATG 2 cut(s) 61, 741
BseLI CCNNNNNNNGG 1 cut(s) 732
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 125, 705
BseNI ACTGG 2 cut(s) 205, 727
BseRI GAGGAG 3 cut(s) 31, 647, 806
BseXI GCAGC 6 cut(s) 87, 90, 93, 96, 295, 786
BshFI GGCC 1 cut(s) 410
BsiHKCI CYCGRG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 732
BsmAI GTCTC 2 cut(s) 43, 182
BsmBI CGTCTC 1 cut(s) 182
BsnI GGCC 1 cut(s) 410
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 3 cut(s) 113, 324, 769
BspANI GGCC 1 cut(s) 410
BspCNI CTCAG 2 cut(s) 126, 706
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 2 cut(s) 205, 727
BssMI GATC 3 cut(s) 113, 324, 769
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 3 cut(s) 130, 219, 484
BstAPI GCANNNNNTGC 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 482
BstC8I GCNNGC 4 cut(s) 47, 67, 276, 450
BstDEI CTNAG 4 cut(s) 134, 398, 680, 714
BstF5I GGATG 2 cut(s) 61, 741
BstKTI GATC 3 cut(s) 116, 327, 772
BstMAI GTCTC 2 cut(s) 43, 182
BstMBI GATC 3 cut(s) 113, 324, 769
BstMWI GCNNNNNNNGC 6 cut(s) 11, 75, 81, 84, 280, 560
BstNSI RCATGY 2 cut(s) 452, 539
BstV1I GCAGC 6 cut(s) 87, 90, 93, 96, 295, 786
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 1 cut(s) 410
BtsCI GGATG 2 cut(s) 61, 741
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 4 cut(s) 47, 67, 276, 450
Csp6I GTAC 1 cut(s) 355
CviAII CATG 5 cut(s) 364, 406, 449, 536, 752
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 4 cut(s) 134, 398, 680, 714
DpnI GATC 3 cut(s) 115, 326, 771
DpnII GATC 3 cut(s) 113, 324, 769
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 3 cut(s) 130, 219, 484
EarI CTCTTC 3 cut(s) 130, 219, 484
Eco24I GRGCYC 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 507
Eco88I CYCGRG 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 104
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 5 cut(s) 367, 409, 452, 539, 755
FatI CATG 5 cut(s) 363, 405, 448, 535, 751
FbaI TGATCA 1 cut(s) 769
Fnu4HI GCNGC 6 cut(s) 76, 79, 82, 85, 309, 800
FokI GGATG 2 cut(s) 68, 748
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 6 cut(s) 76, 79, 82, 85, 309, 800
GluI GCNGC 6 cut(s) 76, 79, 82, 85, 309, 800
HaeIII GGCC 1 cut(s) 410
Hin1II CATG 5 cut(s) 367, 409, 452, 539, 755
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 2 cut(s) 28, 425
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 3 cut(s) 135, 474, 526
Hpy188III TCNNGA 4 cut(s) 40, 232, 667, 788
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 5 cut(s) 91, 229, 531, 538, 791
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 4 cut(s) 293, 371, 619, 802
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 75, 81, 84, 280, 560
HpyF3I CTNAG 4 cut(s) 134, 398, 680, 714
HpySE526I ACGT 1 cut(s) 481
Hsp92II CATG 5 cut(s) 367, 409, 452, 539, 755
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 3 cut(s) 113, 324, 769
LmnI GCTCC 1 cut(s) 783
LpnPI CCDG 8 cut(s) 51, 114, 172, 186, 267, 367, 674, 740
Lsp1109I GCAGC 6 cut(s) 87, 90, 93, 96, 295, 786
LweI GCATC 4 cut(s) 541, 634, 786, 811
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 1 cut(s) 721
MalI GATC 3 cut(s) 115, 326, 771
MboI GATC 3 cut(s) 113, 324, 769
MboII GAAGA 7 cut(s) 108, 111, 117, 236, 449, 501, 718
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 104
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 2 cut(s) 527, 811
MluNI TGGCCA 1 cut(s) 410
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 2 cut(s) 238, 721
Mox20I TGGCCA 1 cut(s) 410
MscI TGGCCA 1 cut(s) 410
MseI TTAA 2 cut(s) 141, 702
Msp20I TGGCCA 1 cut(s) 410
MwoI GCNNNNNNNGC 6 cut(s) 11, 75, 81, 84, 280, 560
NdeII GATC 3 cut(s) 113, 324, 769
NlaIII CATG 5 cut(s) 367, 409, 452, 539, 755
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 721
NspI RCATGY 2 cut(s) 452, 539
PaeI GCATGC 1 cut(s) 452
PaeR7I CTCGAG 1 cut(s) 40
PfeI GAWTC 1 cut(s) 425
PkrI GCNGC 6 cut(s) 77, 80, 83, 86, 310, 801
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 482
PsiI TTATAA 1 cut(s) 512
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SaqAI TTAA 2 cut(s) 141, 702
SatI GCNGC 6 cut(s) 76, 79, 82, 85, 309, 800
Sau3AI GATC 3 cut(s) 113, 324, 769
SchI GAGTC 1 cut(s) 37
SduI GDGCHC 1 cut(s) 104
SfaNI GCATC 4 cut(s) 541, 634, 786, 811
Sfr274I CTCGAG 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
SphI GCATGC 1 cut(s) 452
Sse9I AATT 2 cut(s) 527, 811
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 484
TaqI TCGA 3 cut(s) 26, 41, 666
TasI AATT 2 cut(s) 527, 811
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 2 cut(s) 141, 702
Tru9I TTAA 2 cut(s) 141, 702
TscAI CASTG 1 cut(s) 290
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 6 cut(s) 75, 78, 81, 84, 308, 799
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 3 cut(s) 479, 615, 773
TspRI CASTG 1 cut(s) 290
XapI RAATTY 1 cut(s) 527
XceI RCATGY 2 cut(s) 452, 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XhoI CTCGAG 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.