Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003525

Physical Location & Seq

Genomic Coordinates Reverse (-)

76134956 .. 76136848

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G043350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCCTTTGACTGTAAGCCCTTCTTCAACATCCATAATCTCCCAAAGACCAAACCTTGGTTTCTTCAAAAACAGGGGCAATGGTCCAGCTTTCATAAAACTCCCAAAGAGCAACAACAATGGCAACGTGGGTAGTGGTGGTTTGGTAATATTCGCCTCAAATGGGGCTAATAATCGACAAGCACTGGAGGTGGTGTTCGAGCCCTTTGAGGAGGTCAAGAAGGAGCTCCTTCTCGTCCCAACTGAGCCTAATGCCTCTCTTGCTCGCCAGAAATACACAGACGAAAGTGTAGCTGCCATTAATGAACAAATCAATGTGGAATACAATGTCTCCTATGTGTACCATGCCATCTATGCCTACTTTGACAGAGACAATGTTGCTCTTAAGGGATTTGCCAAGTTTTTCAAAGAATCAAGCGCAGAAGAAAGGGGGCATGCTGAAAAACTGATGGAATATCAGAACAAACGTGGAGGAAGAGTTAAGCTACAGTCCATGCTAATGCCCTGCTCAGAGTTTGATCATGCTGAGAAGGGTGATGCGTTGCACGCAATGGAGCTTGCGCTTGCTTTGGAAAAGCTGAACAATGAGAAACTTCTAAATCTGCACAAAATAGCTAATGAAAACAATGATGTGCATTTAGCGGATTACATTGAAAGTGAATACTTGAATGAACAGGTCGAATCTATAAGGAAAATTTCTGAATATGTAGCTCAGTTGAGAAGGATTGGTCCAGGACATGGTGTTTGGCACTTTGATCAGATGCTCCTTAATGACACAGCCGGGGTCGCCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

264

Amino Acids

29.52

Weight (kDa)

5.8

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin	PF00210	98 - 242	3.9e-33	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01600
fragaria_vesca	FvH4_3g19901 FvH4_6g10770 FvH4_6g10770
malus_domestica	MD03G1060600.v1.1 MD04G1164500.v1.1 MD12G1178200.v1.1 MD12G1178500.v1.1
prunus_persica	Prupe.6G050900_v2.0.a1 Prupe.6G283700_v2.0.a1 Prupe.6G283700_v2.0.a1
pyrus_communis	pycom04g14680 pycom12g16850
rosa_chinensis	RchiOBHm_Chr3g0461811 RchiOBHm_Chr5g0071231
rosa_laevigata	RLG00000024896 RLG00000036193
rosa_multiflora	Rmu_co7996016.1_g000001 Rmu_sc0004308.1_g000013 Rmu_sc0005531.1_g000002 Rmu_sc0006928.1_g000027
rosa_roxburghii	Rroxscaffold_1G00009910 Rroxscaffold_6G00417900
rosa_rugosa	Rorug03G0053900 Rorug05G0410700
rosa_samantha	Rh3AG111900 Rh3BG115200 Rh3DG116900 Rh5AG466700 Rh5BG485200 Rh5CG509600 Rh5DG496500
rosa_wichuraiana	Rw3G009490 Rw5G043350 Rw5G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	56, 737
AciI	CCGC	2 cut(s)	641, 789
AcsI	RAATTY	1 cut(s)	693
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	3 cut(s)	56, 162, 737
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	27, 67, 406, 653, 667
AjnI	CCWGG	1 cut(s)	730
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	8 cut(s)	89, 226, 293, 484, 556, 577, 614, 710
AluI	AGCT	8 cut(s)	89, 226, 293, 484, 556, 577, 614, 710
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	334, 363
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	693
ArsI	GACNNNNNNTTYG	2 cut(s)	726, 758
AseI	ATTAAT	1 cut(s)	300
AspLEI	GCGC	2 cut(s)	419, 562
AspS9I	GGNCC	2 cut(s)	83, 728
AsuC2I	CCSGG	1 cut(s)	781
AsuHPI	GGTGA	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	83, 728
BanII	GRGCYC	2 cut(s)	204, 228
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	356, 442
BciT130I	CCWGG	1 cut(s)	732
BclI	TGATCA	2 cut(s)	517, 754
BcnI	CCSGG	1 cut(s)	781
BcoDI	GTCTC	2 cut(s)	334, 363
BfmI	CTRYAG	1 cut(s)	485
BfrI	CTTAAG	1 cut(s)	383
BisI	GCNGC	2 cut(s)	294, 789
BlsI	GCNGC	2 cut(s)	295, 790
Bme1390I	CCNGG	2 cut(s)	732, 781
Bme18I	GGWCC	2 cut(s)	83, 728
BmgT120I	GGNCC	2 cut(s)	83, 728
BmrFI	CCNGG	2 cut(s)	732, 781
BmsI	GCATC	2 cut(s)	526, 750
BpmI	CTGGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	781
BsaJI	CCNNGG	2 cut(s)	55, 780
BsaXI	ACNNNNNCTCC	6 cut(s)	179, 209, 314, 344, 462, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 162, 737
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	2 cut(s)	85, 555
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	2 cut(s)	55, 780
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	3 cut(s)	56, 162, 737
BseMI	GCAATG	2 cut(s)	85, 555
BseMII	CTCAG	4 cut(s)	234, 516, 522, 725
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	780
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	56, 162, 737
BsmAI	GTCTC	2 cut(s)	334, 363
BsmFI	GGGAC	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	204, 228
Bsp143I	GATC	2 cut(s)	517, 754
BspACI	CCGC	2 cut(s)	641, 789
BspCNI	CTCAG	4 cut(s)	235, 517, 521, 724
BspTI	CTTAAG	1 cut(s)	383
BsrDI	GCAATG	2 cut(s)	85, 555
BsrI	ACTGG	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	55, 780
BssMI	GATC	2 cut(s)	517, 754
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	2 cut(s)	13, 489
Bst6I	CTCTTC	1 cut(s)	469
BstAFI	CTTAAG	1 cut(s)	383
BstC8I	GCNNGC	5 cut(s)	265, 435, 546, 558, 564
BstDEI	CTNAG	4 cut(s)	243, 508, 525, 711
BstF5I	GGATG	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	419, 562
BstKTI	GATC	2 cut(s)	520, 757
BstMAI	GTCTC	2 cut(s)	334, 363
BstMBI	GATC	2 cut(s)	517, 754
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 353, 545, 785
BstNI	CCWGG	1 cut(s)	732
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	730, 779
BstSFI	CTRYAG	1 cut(s)	485
BstV1I	GCAGC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	5 cut(s)	265, 435, 546, 558, 564
CfoI	GCGC	2 cut(s)	419, 562
Cfr13I	GGNCC	2 cut(s)	83, 728
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	6 cut(s)	344, 434, 493, 521, 737, 792
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	4 cut(s)	243, 508, 525, 711
DpnI	GATC	2 cut(s)	519, 756
DpnII	GATC	2 cut(s)	517, 754
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	204, 228
Eco47I	GGWCC	2 cut(s)	83, 728
Eco53kI	GAGCTC	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	204, 228
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	6 cut(s)	347, 437, 496, 524, 740, 795
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	6 cut(s)	343, 433, 492, 520, 736, 791
FbaI	TGATCA	2 cut(s)	517, 754
Fnu4HI	GCNGC	2 cut(s)	294, 789
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	2 cut(s)	204, 228
Fsp4HI	GCNGC	2 cut(s)	294, 789
GlaI	GCGC	2 cut(s)	418, 561
GluI	GCNGC	2 cut(s)	294, 789
GsuI	CTGGAG	1 cut(s)	206
HapII	CCGG	1 cut(s)	780
HhaI	GCGC	2 cut(s)	419, 562
Hin1II	CATG	6 cut(s)	347, 437, 496, 524, 740, 795
Hin6I	GCGC	2 cut(s)	417, 560
HinP1I	GCGC	2 cut(s)	417, 560
HinfI	GANTC	2 cut(s)	410, 680
HpaII	CCGG	1 cut(s)	780
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	4 cut(s)	459, 511, 700, 759
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	5 cut(s)	30, 214, 239, 523, 714
HpyCH4III	ACNGT	2 cut(s)	13, 489
HpyCH4IV	ACGT	2 cut(s)	126, 466
HpyCH4V	TGCA	3 cut(s)	544, 604, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 353, 545, 785
HpyF3I	CTNAG	4 cut(s)	243, 508, 525, 711
HpySE526I	ACGT	2 cut(s)	126, 466
Hsp92II	CATG	6 cut(s)	347, 437, 496, 524, 740, 795
HspAI	GCGC	2 cut(s)	417, 560
Ksp22I	TGATCA	2 cut(s)	517, 754
Kzo9I	GATC	2 cut(s)	517, 754
LmnI	GCTCC	4 cut(s)	223, 231, 553, 768
LpnPI	CCDG	8 cut(s)	58, 99, 170, 281, 517, 659, 717, 744
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	526, 750
MaeII	ACGT	2 cut(s)	126, 466
MalI	GATC	2 cut(s)	519, 756
MboI	GATC	2 cut(s)	517, 754
MboII	GAAGA	4 cut(s)	15, 55, 434, 486
MhlI	GDGCHC	2 cut(s)	204, 228
MluCI	AATT	1 cut(s)	693
MnlI	CCTC	6 cut(s)	166, 181, 202, 205, 265, 464
MseI	TTAA	4 cut(s)	300, 384, 480, 768
MslI	CAYNNNNRTG	1 cut(s)	497
MspCI	CTTAAG	1 cut(s)	383
MspI	CCGG	1 cut(s)	780
MspR9I	CCNGG	2 cut(s)	732, 781
MvaI	CCWGG	1 cut(s)	732
MwoI	GCNNNNNNNGC	4 cut(s)	260, 353, 545, 785
NciI	CCSGG	1 cut(s)	781
NdeII	GATC	2 cut(s)	517, 754
NlaIII	CATG	6 cut(s)	347, 437, 496, 524, 740, 795
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	410, 680
PflMI	CCANNNNNTGG	2 cut(s)	56, 737
PfoI	TCCNGGA	1 cut(s)	730
PkrI	GCNGC	2 cut(s)	295, 790
PshBI	ATTAAT	1 cut(s)	300
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	730
PspPI	GGNCC	2 cut(s)	83, 728
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	4 cut(s)	300, 384, 480, 768
SatI	GCNGC	2 cut(s)	294, 789
Sau3AI	GATC	2 cut(s)	517, 754
Sau96I	GGNCC	2 cut(s)	83, 728
ScrFI	CCNGG	2 cut(s)	732, 781
SduI	GDGCHC	2 cut(s)	204, 228
SfaNI	GCATC	2 cut(s)	526, 750
SfcI	CTRYAG	1 cut(s)	485
SinI	GGWCC	2 cut(s)	83, 728
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	1 cut(s)	693
SsiI	CCGC	2 cut(s)	641, 789
SspI	AATATT	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	730, 779
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	13, 489
TaiI	ACGT	2 cut(s)	129, 469
TaqI	TCGA	3 cut(s)	175, 198, 678
TasI	AATT	1 cut(s)	693
TauI	GCSGC	1 cut(s)	791
TfiI	GAWTC	2 cut(s)	410, 680
Tru1I	TTAA	4 cut(s)	300, 384, 480, 768
Tru9I	TTAA	4 cut(s)	300, 384, 480, 768
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	82, 318, 633, 684
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	2 cut(s)	56, 737
Vha464I	CTTAAG	1 cut(s)	383
VpaK11BI	GGWCC	2 cut(s)	83, 728
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	1 cut(s)	693
XceI	RCATGY	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.