Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003525

Physical Location & Seq

Genomic Coordinates Forward (+)

12412505 .. 12414653

Gene Structure 2149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00009910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCCTTTGACTATAAGCCCTTCTTCAACATCCATAATCTCCCAAAGACCAAACCTCATTTTCTTCAAAAACACTGGGCCAGCTTTCATCAAACTCCCAAAGAGCAACAACAATGGCAACGTGGGTAGTGGTGGTTTGGTAATATTCGCCTCAAATGGGGCTAATAATCGACAACCACTGGAGGTGGTGTTCGAGCCCTTTGAGGAGGTCAAGAAGGAGCTCCTTCTCGTCCCAACTGAGCCTAATGCTTCTCTTGCTCGCCAGAAATACACAGACGAAAGTGTAGCTGCCATTAATGAACAAATCAATGTGGAATACAATGTCTCCTATGTGTACCATGCCATGTATGCCTACTTTGACAGAGACAATGTTGCTCTTAAGGGATTTGCCAAGTTTTTCAAAGAATCAAGTGCAGAAGAAAGGGGGCATGCTGAAAAACTGATGGAATATCAGAACAAACGTGGAGGAAGAGTTAAGCTACAGTCCATGCTAATGCCCTGCTCAGAGTTTGATCATGCAGAGAAGGGTGATGCGTTGCACGCAATGGAGCTTGCGCTTGCTTTGGAAAAGCTGAACAATGAGAAACTTATAAATCTGCACAAAATAGCTAATGAAAACAATGATGTGCATTTAGTGGATTATATTGAAAGTGAATACTTGAATGAACAGGTCGAATCTATAAGGAAAATTTCTGAATATGTAGCTCAGTTGAGAAGGATTGGTCCAGGACATGGTGTTTGGCACTTTGATCAGATGCTCCTTGATGACACAGCCGGGGTCGCCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

262

Amino Acids

29.43

Weight (kDa)

5.54

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin	PF00210	96 - 240	2.5e-33	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01600
fragaria_vesca	FvH4_3g19901 FvH4_6g10770 FvH4_6g10770
malus_domestica	MD03G1060600.v1.1 MD04G1164500.v1.1 MD12G1178200.v1.1 MD12G1178500.v1.1
prunus_persica	Prupe.6G050900_v2.0.a1 Prupe.6G283700_v2.0.a1 Prupe.6G283700_v2.0.a1
pyrus_communis	pycom04g14680 pycom12g16850
rosa_chinensis	RchiOBHm_Chr3g0461811 RchiOBHm_Chr5g0071231
rosa_laevigata	RLG00000024896 RLG00000036193
rosa_multiflora	Rmu_co7996016.1_g000001 Rmu_sc0004308.1_g000013 Rmu_sc0005531.1_g000002 Rmu_sc0006928.1_g000027
rosa_roxburghii	Rroxscaffold_1G00009910 Rroxscaffold_6G00417900
rosa_rugosa	Rorug03G0053900 Rorug05G0410700
rosa_samantha	Rh3AG111900 Rh3BG115200 Rh3DG116900 Rh5AG466700 Rh5BG485200 Rh5CG509600 Rh5DG496500
rosa_wichuraiana	Rw3G009490 Rw5G043350 Rw5G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	590
AccB7I	CCANNNNNTGG	1 cut(s)	731
AciI	CCGC	1 cut(s)	783
AcsI	RAATTY	1 cut(s)	687
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	156, 731
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	5 cut(s)	27, 67, 400, 647, 661
AjnI	CCWGG	1 cut(s)	724
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	8 cut(s)	83, 220, 287, 478, 550, 571, 608, 704
AluI	AGCT	8 cut(s)	83, 220, 287, 478, 550, 571, 608, 704
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	328, 357
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	687
ArsI	GACNNNNNNTTYG	2 cut(s)	720, 752
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	77, 722
AsuC2I	CCSGG	1 cut(s)	775
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	722
BanII	GRGCYC	2 cut(s)	198, 222
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	436
BciT130I	CCWGG	1 cut(s)	726
BclI	TGATCA	2 cut(s)	511, 748
BcnI	CCSGG	1 cut(s)	775
BcoDI	GTCTC	2 cut(s)	328, 357
BfmI	CTRYAG	1 cut(s)	479
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	2 cut(s)	288, 783
BlsI	GCNGC	2 cut(s)	289, 784
Bme1390I	CCNGG	2 cut(s)	726, 775
Bme18I	GGWCC	1 cut(s)	722
BmgT120I	GGNCC	2 cut(s)	77, 722
BmrFI	CCNGG	2 cut(s)	726, 775
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	2 cut(s)	520, 744
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	775
BsaJI	CCNNGG	1 cut(s)	774
BsaXI	ACNNNNNCTCC	6 cut(s)	173, 203, 308, 338, 456, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	156, 731
Bse1I	ACTGG	2 cut(s)	79, 183
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	156, 731
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	3 cut(s)	228, 516, 719
BseNI	ACTGG	2 cut(s)	79, 183
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	2 cut(s)	432, 581
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	774
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	156, 731
BsmAI	GTCTC	2 cut(s)	328, 357
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	79
Bsp1286I	GDGCHC	2 cut(s)	198, 222
Bsp143I	GATC	2 cut(s)	511, 748
BspACI	CCGC	1 cut(s)	783
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	3 cut(s)	229, 515, 718
BspTI	CTTAAG	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	79, 183
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	2 cut(s)	511, 748
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	1 cut(s)	483
Bst6I	CTCTTC	1 cut(s)	463
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	6 cut(s)	81, 259, 429, 540, 552, 558
BstDEI	CTNAG	3 cut(s)	237, 502, 705
BstF5I	GGATG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	2 cut(s)	514, 751
BstMAI	GTCTC	2 cut(s)	328, 357
BstMBI	GATC	2 cut(s)	511, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 347, 539, 779
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	724, 773
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	72, 176
Cac8I	GCNNGC	6 cut(s)	81, 259, 429, 540, 552, 558
CfoI	GCGC	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	77, 722
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	7 cut(s)	338, 343, 428, 487, 515, 731, 786
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	3 cut(s)	237, 502, 705
DpnI	GATC	2 cut(s)	513, 750
DpnII	GATC	2 cut(s)	511, 748
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	198, 222
Eco47I	GGWCC	1 cut(s)	722
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	724
EcoT38I	GRGCYC	2 cut(s)	198, 222
FaeI	CATG	7 cut(s)	341, 346, 431, 490, 518, 734, 789
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	7 cut(s)	337, 342, 427, 486, 514, 730, 785
FbaI	TGATCA	2 cut(s)	511, 748
Fnu4HI	GCNGC	2 cut(s)	288, 783
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	2 cut(s)	198, 222
Fsp4HI	GCNGC	2 cut(s)	288, 783
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	2 cut(s)	288, 783
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	774
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	7 cut(s)	341, 346, 431, 490, 518, 734, 789
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HinfI	GANTC	2 cut(s)	404, 674
HpaII	CCGG	1 cut(s)	774
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	453, 505, 694, 753
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	5 cut(s)	30, 208, 233, 517, 708
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4IV	ACGT	2 cut(s)	120, 460
HpyCH4V	TGCA	5 cut(s)	413, 518, 538, 598, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 347, 539, 779
HpyF3I	CTNAG	3 cut(s)	237, 502, 705
HpySE526I	ACGT	2 cut(s)	120, 460
Hsp92II	CATG	7 cut(s)	341, 346, 431, 490, 518, 734, 789
HspAI	GCGC	1 cut(s)	554
Ksp22I	TGATCA	2 cut(s)	511, 748
Kzo9I	GATC	2 cut(s)	511, 748
LmnI	GCTCC	4 cut(s)	217, 225, 547, 762
LpnPI	CCDG	8 cut(s)	60, 93, 164, 275, 511, 653, 711, 738
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	2 cut(s)	520, 744
MaeII	ACGT	2 cut(s)	120, 460
MalI	GATC	2 cut(s)	513, 750
MboI	GATC	2 cut(s)	511, 748
MboII	GAAGA	4 cut(s)	15, 55, 428, 480
MhlI	GDGCHC	2 cut(s)	198, 222
MluCI	AATT	1 cut(s)	687
MnlI	CCTC	6 cut(s)	65, 160, 175, 196, 199, 458
MseI	TTAA	3 cut(s)	294, 378, 474
MslI	CAYNNNNRTG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	1 cut(s)	774
MspR9I	CCNGG	2 cut(s)	726, 775
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	4 cut(s)	254, 347, 539, 779
NciI	CCSGG	1 cut(s)	775
NdeII	GATC	2 cut(s)	511, 748
NlaIII	CATG	7 cut(s)	341, 346, 431, 490, 518, 734, 789
NspI	RCATGY	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	404, 674
PflMI	CCANNNNNTGG	1 cut(s)	731
PfoI	TCCNGGA	1 cut(s)	724
PkrI	GCNGC	2 cut(s)	289, 784
PshBI	ATTAAT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	590
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspPI	GGNCC	2 cut(s)	77, 722
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	491
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	294, 378, 474
SatI	GCNGC	2 cut(s)	288, 783
Sau3AI	GATC	2 cut(s)	511, 748
Sau96I	GGNCC	2 cut(s)	77, 722
ScrFI	CCNGG	2 cut(s)	726, 775
SduI	GDGCHC	2 cut(s)	198, 222
SfaNI	GCATC	2 cut(s)	520, 744
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	722
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	1 cut(s)	687
SsiI	CCGC	1 cut(s)	783
SspI	AATATT	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	724, 773
TaaI	ACNGT	1 cut(s)	483
TaiI	ACGT	2 cut(s)	123, 463
TaqI	TCGA	3 cut(s)	169, 192, 672
TasI	AATT	1 cut(s)	687
TauI	GCSGC	1 cut(s)	785
TfiI	GAWTC	2 cut(s)	404, 674
Tru1I	TTAA	3 cut(s)	294, 378, 474
Tru9I	TTAA	3 cut(s)	294, 378, 474
TscAI	CASTG	2 cut(s)	79, 183
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	76, 312, 627, 678
TspRI	CASTG	2 cut(s)	79, 183
Van91I	CCANNNNNTGG	1 cut(s)	731
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	722
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	1 cut(s)	687
XceI	RCATGY	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.