Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003525

Physical Location & Seq

Genomic Coordinates Forward (+)

13041825 .. 13043942

Gene Structure 2118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19901.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGATTCTTGAGAAAAAGACACTATTACCCTGTAGCCTGCTGGCTCATCCATTCTCCTCTCCTCCTCCATTGTCGCCTGCCTCCTCGGTTTCCTACTCTGCCGCTCCTCTGAACTCATTGACGTCTCTGTTTTTAAGTCTCCGATCGTCTCCGGCGGTATGCATGGTCTCTTTCTCCTCCTCCATTGTCATCTCCCTCCTTGGTTTCCTACTCCGCCGCTCCTCTAAACTCGTCGACGTCGGGTCTGGGTTTGTGCCAAGATCGATGATGGATGCGCCGGGGTCGGTGGAGGAGGCCGGTGTGCTCACCGTCGGGGATGGTGGGTGCCCAGTTCAAGTCATAACTAGTTACAAGGGAAATTCCGGTGACCGGAGTCCGGCGGCCGGTGACCAGAGTCCGAGAACAATAGAAGAAGGGAAGACCTCTTTTCTGAAATACAGAGAACAAGAGAAGAAGGGAAGACAAGGAGATTTAGTCGACGGTTTTGGGTCTCCGGCGAAATTTGTGTGGGGAAGACGAGTATGTAGAAGAGGAGAAGACGAGTTTGTAGATCGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000270 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004563 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005975 GO:0006022 GO:0006026 GO:0006027 GO:0006464 GO:0006491 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009253 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0015929 GO:0016052 GO:0016231 GO:0016787 GO:0016798 GO:0019538 GO:0030203 GO:0033925 GO:0035821 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044033 GO:0044035 GO:0044040 GO:0044041 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044278 GO:0044419 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051672 GO:0051704 GO:0051707 GO:0071704 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00511 map00511

Pfam Domains

Protein Families

Glyco_hydro_85

Protein Analysis

187

Amino Acids

19.9

Weight (kDa)

9.18

Isoelectric Point (pI)

71.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01600
fragaria_vesca	FvH4_3g19901 FvH4_6g10770 FvH4_6g10770
malus_domestica	MD03G1060600.v1.1 MD04G1164500.v1.1 MD12G1178200.v1.1 MD12G1178500.v1.1
prunus_persica	Prupe.6G050900_v2.0.a1 Prupe.6G283700_v2.0.a1 Prupe.6G283700_v2.0.a1
pyrus_communis	pycom04g14680 pycom12g16850
rosa_chinensis	RchiOBHm_Chr3g0461811 RchiOBHm_Chr5g0071231
rosa_laevigata	RLG00000024896 RLG00000036193
rosa_multiflora	Rmu_co7996016.1_g000001 Rmu_sc0004308.1_g000013 Rmu_sc0005531.1_g000002 Rmu_sc0006928.1_g000027
rosa_roxburghii	Rroxscaffold_1G00009910 Rroxscaffold_6G00417900
rosa_rugosa	Rorug03G0053900 Rorug05G0410700
rosa_samantha	Rh3AG111900 Rh3BG115200 Rh3DG116900 Rh5AG466700 Rh5BG485200 Rh5CG509600 Rh5DG496500
rosa_wichuraiana	Rw3G009490 Rw5G043350 Rw5G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	125, 240
AccB1I	GGYRCC	1 cut(s)	324
AccBSI	CCGCTC	2 cut(s)	104, 219
AccI	GTMKAC	2 cut(s)	234, 477
AciI	CCGC	5 cut(s)	102, 155, 214, 217, 380
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	2 cut(s)	358, 500
AcyI	GRCGYC	2 cut(s)	122, 237
AfiI	CCNNNNNNNGG	3 cut(s)	369, 376, 383
AgsI	TTSAA	1 cut(s)	335
AhdI	GACNNNNNGTC	1 cut(s)	241
AhlI	ACTAGT	1 cut(s)	344
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	5 cut(s)	129, 143, 153, 172, 495
AoxI	GGCC	2 cut(s)	294, 381
ApoI	RAATTY	2 cut(s)	358, 500
AspLEI	GCGC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	298, 377, 398
BaeGI	GKGCMC	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	324
BbsI	GAAGAC	4 cut(s)	425, 466, 520, 543
Bbv12I	GWGCWC	1 cut(s)	306
BccI	CCATC	2 cut(s)	262, 311
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	5 cut(s)	129, 143, 153, 172, 495
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	3 cut(s)	102, 217, 381
BlsI	GCNGC	3 cut(s)	103, 218, 382
Bme1390I	CCNGG	1 cut(s)	279
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	323
BoxI	GACNNNNGTC	2 cut(s)	372, 393
BpiI	GAAGAC	4 cut(s)	425, 466, 520, 543
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	263
BsaHI	GRCGYC	2 cut(s)	122, 237
BsaI	GGTCTC	2 cut(s)	172, 495
BsaJI	CCNNGG	3 cut(s)	84, 199, 278
BsaWI	WCCGGW	2 cut(s)	362, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	3 cut(s)	369, 376, 383
Bse118I	RCCGGY	2 cut(s)	296, 383
Bse1I	ACTGG	1 cut(s)	329
BseCI	ATCGAT	1 cut(s)	263
BseDI	CCNNGG	3 cut(s)	84, 199, 278
BseGI	GGATG	3 cut(s)	46, 277, 322
BseLI	CCNNNNNNNGG	3 cut(s)	369, 376, 383
BseNI	ACTGG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	329
BseX3I	CGGCCG	1 cut(s)	381
Bsh1285I	CGRYCG	2 cut(s)	146, 384
BshFI	GGCC	2 cut(s)	296, 383
BshNI	GGYRCC	1 cut(s)	324
BshVI	ATCGAT	1 cut(s)	263
BsiEI	CGRYCG	2 cut(s)	146, 384
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	8 cut(s)	152, 278, 297, 363, 370, 377, 384, 494
BslI	CCNNNNNNNGG	3 cut(s)	369, 376, 383
BsmAI	GTCTC	5 cut(s)	129, 143, 153, 172, 495
BsmBI	CGTCTC	2 cut(s)	129, 153
BsnI	GGCC	2 cut(s)	296, 383
Bso31I	GGTCTC	2 cut(s)	172, 495
Bsp1286I	GDGCHC	2 cut(s)	306, 329
Bsp143I	GATC	3 cut(s)	143, 260, 550
BspACI	CCGC	5 cut(s)	102, 155, 214, 217, 380
BspANI	GGCC	2 cut(s)	296, 383
BspDI	ATCGAT	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	324
BspTNI	GGTCTC	2 cut(s)	172, 495
BsrBI	CCGCTC	2 cut(s)	104, 219
BsrFI	RCCGGY	2 cut(s)	296, 383
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	2 cut(s)	296, 383
BssECI	CCNNGG	3 cut(s)	84, 199, 278
BssMI	GATC	3 cut(s)	143, 260, 550
BssNI	GRCGYC	2 cut(s)	122, 237
BssT1I	CCWWGG	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	310, 482
Bst6I	CTCTTC	1 cut(s)	523
BstACI	GRCGYC	2 cut(s)	122, 237
BstC8I	GCNNGC	3 cut(s)	38, 42, 78
BstEII	GGTNACC	2 cut(s)	365, 386
BstF5I	GGATG	3 cut(s)	46, 277, 322
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	3 cut(s)	146, 263, 553
BstMAI	GTCTC	5 cut(s)	129, 143, 153, 172, 495
BstMBI	GATC	3 cut(s)	143, 260, 550
BstMCI	CGRYCG	2 cut(s)	146, 384
BstPAI	GACNNNNGTC	2 cut(s)	372, 393
BstPI	GGTNACC	2 cut(s)	365, 386
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	329
BstV2I	GAAGAC	4 cut(s)	425, 466, 520, 543
BstZI	CGGCCG	1 cut(s)	381
Bsu15I	ATCGAT	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	296, 383
BsuTUI	ATCGAT	1 cut(s)	263
BtsCI	GGATG	3 cut(s)	46, 277, 322
Cac8I	GCNNGC	3 cut(s)	38, 42, 78
CfoI	GCGC	1 cut(s)	277
Cfr10I	RCCGGY	2 cut(s)	296, 383
ClaI	ATCGAT	1 cut(s)	263
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	4 cut(s)	36, 44, 296, 383
CviKI_1	RGCY	4 cut(s)	36, 44, 296, 383
DpnI	GATC	3 cut(s)	145, 262, 552
DpnII	GATC	3 cut(s)	143, 260, 550
DriI	GACNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	381
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	523
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EarI	CTCTTC	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	203
EclXI	CGGCCG	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	199
Eco31I	GGTCTC	2 cut(s)	172, 495
Eco52I	CGGCCG	1 cut(s)	381
Eco91I	GGTNACC	2 cut(s)	365, 386
EcoO65I	GGTNACC	2 cut(s)	365, 386
EcoT14I	CCWWGG	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	199
Esp3I	CGTCTC	2 cut(s)	129, 153
FaeI	CATG	1 cut(s)	166
FaiI	YATR	4 cut(s)	160, 164, 341, 523
FatI	CATG	1 cut(s)	162
FblI	GTMKAC	2 cut(s)	234, 477
Fnu4HI	GCNGC	3 cut(s)	102, 217, 381
FokI	GGATG	3 cut(s)	33, 284, 329
Fsp4HI	GCNGC	3 cut(s)	102, 217, 381
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	3 cut(s)	102, 217, 381
HaeIII	GGCC	2 cut(s)	296, 383
HapII	CCGG	8 cut(s)	152, 278, 297, 363, 370, 377, 384, 494
HhaI	GCGC	1 cut(s)	277
Hin1I	GRCGYC	2 cut(s)	122, 237
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HincII	GTYRAC	2 cut(s)	235, 478
HindII	GTYRAC	2 cut(s)	235, 478
HinfI	GANTC	3 cut(s)	4, 373, 394
HpaII	CCGG	8 cut(s)	152, 278, 297, 363, 370, 377, 384, 494
HphI	GGTGA	3 cut(s)	298, 377, 398
Hpy166II	GTNNAC	2 cut(s)	235, 478
Hpy188I	TCNGA	5 cut(s)	111, 143, 399, 432, 555
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	2 cut(s)	235, 478
Hpy99I	CGWCG	5 cut(s)	236, 239, 242, 314, 482
HpyAV	CCTTC	2 cut(s)	407, 448
HpyCH4III	ACNGT	2 cut(s)	310, 482
HpyCH4IV	ACGT	2 cut(s)	122, 237
HpyCH4V	TGCA	1 cut(s)	162
HpySE526I	ACGT	2 cut(s)	122, 237
Hsp92I	GRCGYC	2 cut(s)	122, 237
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	3 cut(s)	143, 260, 550
LmnI	GCTCC	2 cut(s)	109, 224
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	122, 237
MaeIII	GTNAC	3 cut(s)	347, 365, 386
MalI	GATC	3 cut(s)	145, 262, 552
MbiI	CCGCTC	2 cut(s)	104, 219
MboI	GATC	3 cut(s)	143, 260, 550
MboII	GAAGA	7 cut(s)	422, 430, 463, 471, 525, 540, 548
MhlI	GDGCHC	2 cut(s)	306, 329
MluCI	AATT	2 cut(s)	358, 500
MlyI	GAGTC	2 cut(s)	382, 403
Mph1103I	ATGCAT	1 cut(s)	164
MseI	TTAA	1 cut(s)	134
MspI	CCGG	8 cut(s)	152, 278, 297, 363, 370, 377, 384, 494
MspR9I	CCNGG	1 cut(s)	279
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	3 cut(s)	143, 260, 550
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	326
NmuCI	GTSAC	2 cut(s)	365, 386
NsiI	ATGCAT	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	103, 218, 382
Ple19I	CGATCG	1 cut(s)	146
PleI	GAGTC	2 cut(s)	381, 402
PpsI	GAGTC	2 cut(s)	381, 402
PshAI	GACNNNNGTC	2 cut(s)	372, 393
PspEI	GGTNACC	2 cut(s)	365, 386
PspN4I	GGNNCC	1 cut(s)	326
PvuI	CGATCG	1 cut(s)	146
SalI	GTCGAC	2 cut(s)	233, 476
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	3 cut(s)	102, 217, 381
Sau3AI	GATC	3 cut(s)	143, 260, 550
SchI	GAGTC	2 cut(s)	382, 403
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	306, 329
SetI	ASST	3 cut(s)	125, 240, 425
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	31
SgrDI	CGTCGACG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SpeI	ACTAGT	1 cut(s)	344
Sse9I	AATT	2 cut(s)	358, 500
SsiI	CCGC	5 cut(s)	102, 155, 214, 217, 380
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	2 cut(s)	310, 482
TaiI	ACGT	2 cut(s)	125, 240
TaqI	TCGA	3 cut(s)	234, 263, 477
TasI	AATT	2 cut(s)	358, 500
TauI	GCSGC	3 cut(s)	104, 219, 383
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseFI	GTSAC	2 cut(s)	365, 386
Tsp45I	GTSAC	2 cut(s)	365, 386
XapI	RAATTY	2 cut(s)	358, 500
XmiI	GTMKAC	2 cut(s)	234, 477
XspI	CTAG	1 cut(s)	345
ZraI	GACGTC	2 cut(s)	123, 238
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.