FvH4_6g10770

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003525
Physical Location & Seq
Forward (+)
6464165 .. 6467043
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10770.t1

Sequence Viewer

Length: 792 bp
ATGGCAATGTCTGTGAGGAGCGTTTCGGGGTTTTCGGTGTCGAGCAAGCAAGGGAATGGTGGTGCTGATTTTAGCAGCAACAGCCTCTTGTTGAATGGCTCAAAACTTATTGGATCTTCTTCTTCCTCTTCTAGTCTGAGTTTTAATCGGCAGAGGAGACCCAGAAACCTTGCGGTTTCTGCGTCGAGCGAGAAGGTGATGACTGGTGTTGTGTTCCACCCTTTTGAAGAGGTCAAGAAGGAGGTTCTTGCTATTCCTGTCTCACCTCACGTTTCGCTTGCTCGTCAGGGCTTTGCAGATGAGTGTGAAGCTGCGATTAATGAGCAGATCAATGTGGAATACAACGTGTCATATGTGTACCATGCGATGTTTGCATATTTTGACAGGGACAATGTTGCTCTCAAGGGCCTCGCCAAGTTTTTCAAGGAATCAAGTGAAGAAGAAAGAGAGCATGCTGAAAAACTGATGGAATATCAAAATGTACGAGGCGGAAGAGTAAAGTTACACTCTATTATAAATCCCCCTTCAGAGTTTGAGCATGCTGAGAAAGGAGATGCATTATATGCTATGGAGTTAGCTTTGTCTTTGGAGAAGCTGACAAATGAAAAGCTCTTGAACTTGCATAGGGTGGCACAGGAGAACAATGATGTTCAATTGACAGATTTTATCGAGAGCGAGTTTCTTACTGAGCAGGTTGAAGCCATAAAGAAGATAGCGGAGTATGTCACCCAGTTGAGGATGGTTGGAAAAGGACATGGAGTGTGGCACTTTGATCAAGAGCTGCTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04216 ko04217 ko04978 map04216 map04217 map04978
Pfam Domains
Protein Families
Ferritin

Protein Analysis

264

Amino Acids

29.43

Weight (kDa)

5.72

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 104 - 247 9.2e-35 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
Acc36I ACCTGC 1 cut(s) 682
AciI CCGC 3 cut(s) 173, 489, 716
AclWI GGATC 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 2 cut(s) 359, 483
AfiI CCNNNNNNNGG 1 cut(s) 735
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 6 cut(s) 94, 227, 424, 616, 653, 698
AluBI AGCT 5 cut(s) 311, 578, 595, 610, 781
AluI AGCT 5 cut(s) 311, 578, 595, 610, 781
Alw26I GTCTC 2 cut(s) 151, 265
AlwI GGATC 1 cut(s) 121
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 3 cut(s) 75, 311, 781
AseI ATTAAT 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 3 cut(s) 208, 255, 718
BbvI GCAGC 3 cut(s) 87, 298, 768
BccI CCATC 2 cut(s) 460, 733
BclI TGATCA 1 cut(s) 772
BcoDI GTCTC 2 cut(s) 151, 265
BfaI CTAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 682
BisI GCNGC 3 cut(s) 76, 312, 782
BlsI GCNGC 3 cut(s) 77, 313, 783
BmgT120I GGNCC 1 cut(s) 406
BmrI ACTGGG 1 cut(s) 724
BmsI GCATC 1 cut(s) 544
BmuI ACTGGG 1 cut(s) 724
BpuEI CTTGAG 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 735
Bse1I ACTGG 2 cut(s) 208, 730
Bse3DI GCAATG 1 cut(s) 12
BseGI GGATG 1 cut(s) 744
BseLI CCNNNNNNNGG 1 cut(s) 735
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 128, 534, 678
BseNI ACTGG 2 cut(s) 208, 730
BseRI GAGGAG 2 cut(s) 31, 169
BseXI GCAGC 3 cut(s) 87, 298, 768
BshFI GGCC 1 cut(s) 408
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 735
BsmAI GTCTC 2 cut(s) 151, 265
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 1 cut(s) 408
Bso31I GGTCTC 1 cut(s) 151
Bsp143I GATC 3 cut(s) 113, 327, 772
BspACI CCGC 3 cut(s) 173, 489, 716
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 3 cut(s) 129, 535, 679
BspMI ACCTGC 1 cut(s) 682
BspPI GGATC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 2 cut(s) 208, 730
BssMI GATC 3 cut(s) 113, 327, 772
Bst6I CTCTTC 3 cut(s) 133, 222, 487
BstAPI GCANNNNNTGC 1 cut(s) 563
BstC8I GCNNGC 4 cut(s) 47, 279, 453, 540
BstDEI CTNAG 3 cut(s) 137, 543, 687
BstF5I GGATG 1 cut(s) 744
BstKTI GATC 3 cut(s) 116, 330, 775
BstMAI GTCTC 2 cut(s) 151, 265
BstMBI GATC 3 cut(s) 113, 327, 772
BstMWI GCNNNNNNNGC 4 cut(s) 81, 179, 371, 563
BstNSI RCATGY 2 cut(s) 455, 542
BstV1I GCAGC 3 cut(s) 87, 298, 768
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 1 cut(s) 408
BtgZI GCGATG 1 cut(s) 380
BtsCI GGATG 1 cut(s) 744
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 4 cut(s) 47, 279, 453, 540
Cfr13I GGNCC 1 cut(s) 406
CseI GACGC 1 cut(s) 171
Csp6I GTAC 2 cut(s) 358, 482
CviAII CATG 4 cut(s) 362, 452, 539, 755
CviQI GTAC 2 cut(s) 358, 482
DdeI CTNAG 3 cut(s) 137, 543, 687
DpnI GATC 3 cut(s) 115, 329, 774
DpnII GATC 3 cut(s) 113, 327, 772
Eam1104I CTCTTC 3 cut(s) 133, 222, 487
EarI CTCTTC 3 cut(s) 133, 222, 487
EciI GGCGGA 1 cut(s) 504
Eco31I GGTCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 559
FaeI CATG 4 cut(s) 365, 455, 542, 758
FalI AAGNNNNNCTT 1 cut(s) 768
FaqI GGGAC 1 cut(s) 401
FatI CATG 4 cut(s) 361, 451, 538, 754
FauNDI CATATG 1 cut(s) 352
FbaI TGATCA 1 cut(s) 772
Fnu4HI GCNGC 3 cut(s) 76, 312, 782
FokI GGATG 1 cut(s) 751
Fsp4HI GCNGC 3 cut(s) 76, 312, 782
FspBI CTAG 1 cut(s) 132
GluI GCNGC 3 cut(s) 76, 312, 782
HaeIII GGCC 1 cut(s) 408
HgaI GACGC 1 cut(s) 171
Hin1II CATG 4 cut(s) 365, 455, 542, 758
HinfI GANTC 1 cut(s) 428
HphI GGTGA 3 cut(s) 208, 255, 718
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 2 cut(s) 138, 529
Hpy188III TCNNGA 4 cut(s) 235, 613, 670, 776
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 3 cut(s) 187, 232, 534
HpyCH4IV ACGT 2 cut(s) 270, 345
HpyCH4V TGCA 4 cut(s) 296, 374, 557, 622
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 179, 371, 563
HpyF3I CTNAG 3 cut(s) 137, 543, 687
HpySE526I ACGT 2 cut(s) 270, 345
Hsp92II CATG 4 cut(s) 365, 455, 542, 758
Ksp22I TGATCA 1 cut(s) 772
Kzo9I GATC 3 cut(s) 113, 327, 772
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 8 cut(s) 175, 189, 270, 272, 370, 620, 677, 743
Lsp1109I GCAGC 3 cut(s) 87, 298, 768
LweI GCATC 1 cut(s) 544
MaeI CTAG 1 cut(s) 132
MaeII ACGT 2 cut(s) 270, 345
MaeIII GTNAC 2 cut(s) 501, 724
MalI GATC 3 cut(s) 115, 329, 774
MboI GATC 3 cut(s) 113, 327, 772
MboII GAAGA 9 cut(s) 108, 111, 114, 120, 239, 449, 452, 504, 721
MfeI CAATTG 1 cut(s) 653
MflI RGATCY 1 cut(s) 113
MluCI AATT 1 cut(s) 653
MmeI TCCRAC 1 cut(s) 724
Mph1103I ATGCAT 1 cut(s) 559
MseI TTAA 3 cut(s) 144, 318, 790
MunI CAATTG 1 cut(s) 653
MwoI GCNNNNNNNGC 4 cut(s) 81, 179, 371, 563
NdeI CATATG 1 cut(s) 352
NdeII GATC 3 cut(s) 113, 327, 772
NlaIII CATG 4 cut(s) 365, 455, 542, 758
NmuCI GTSAC 1 cut(s) 724
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 2 cut(s) 455, 542
PaeI GCATGC 2 cut(s) 455, 542
PfeI GAWTC 1 cut(s) 428
PkrI GCNGC 3 cut(s) 77, 313, 783
PshBI ATTAAT 1 cut(s) 318
PsiI TTATAA 1 cut(s) 515
PspPI GGNCC 1 cut(s) 406
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 2 cut(s) 359, 483
RsaNI GTAC 2 cut(s) 358, 482
SaqAI TTAA 3 cut(s) 144, 318, 790
SatI GCNGC 3 cut(s) 76, 312, 782
Sau3AI GATC 3 cut(s) 113, 327, 772
Sau96I GGNCC 1 cut(s) 406
SfaNI GCATC 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SphI GCATGC 2 cut(s) 455, 542
Sse9I AATT 1 cut(s) 653
SsiI CCGC 3 cut(s) 173, 489, 716
SspMI CTAG 1 cut(s) 132
TaiI ACGT 2 cut(s) 273, 348
TaqI TCGA 3 cut(s) 41, 185, 669
TasI AATT 1 cut(s) 653
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 3 cut(s) 144, 318, 790
Tru9I TTAA 3 cut(s) 144, 318, 790
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 3 cut(s) 75, 311, 781
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 2 cut(s) 618, 776
VspI ATTAAT 1 cut(s) 318
XceI RCATGY 2 cut(s) 455, 542
XspI CTAG 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.