AT5G01600

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003525
Physical Location & Seq
Reverse (-)
227953 .. 230051
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01600.1

Sequence Viewer

Length: 768 bp
ATGGCCTCAAACGCACTCTCGTCTTTCACCGCCGCTAATCCCGCTCTGTCTCCTAAGCCACTACTCCCTCACGGCTCTGCTTCTCCGTCGGTTTCTCTCGGCTTCTCCAGGAAAGTTGGCGGCGGCAGAGCAGTGGTCGTTGCAGCGGCTACGGTGGACACAAACAACATGCCGATGACCGGAGTCGTGTTCCAGCCTTTCGAAGAGGTGAAGAAAGCCGATCTGGCCATTCCAATCACATCTCATGCCTCTCTCGCTCGCCAGAGGTTTGCCGACGCTAGCGAGGCAGTCATTAATGAGCAAATCAATGTGGAATACAACGTCTCCTATGTGTACCATTCAATGTACGCATACTTTGACAGAGACAACGTTGCTATGAAGGGACTAGCCAAATTTTTCAAGGAATCAAGTGAGGAAGAGAGAGGGCATGCTGAGAAGTTTATGGAGTACCAGAACCAAAGAGGAGGAAGAGTGAAACTCCACCCTATCGTCTCACCTATCTCAGAATTCGAACATGCTGAAAAAGGAGATGCTTTATATGCAATGGAGTTGGCTCTGTCTCTAGAGAAACTCACTAATGAGAAGCTTCTAAACGTTCACAAAGTGGCCTCAGAGAACAATGATCCCCAGTTAGCTGATTTCGTTGAGAGTGAATTTCTGGGAGAGCAGATTGAAGCAATCAAGAAGATCTCAGACTACATCACCCAGCTAAGGATGATCGGCAAAGGCCACGGAGTTTGGCATTTCGACCAGATGCTTCTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000041 GO:0000302 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009791 GO:0009908 GO:0009941 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033993 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097305 GO:0097577 GO:0098771 GO:0099402 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04216 ko04217 ko04978 map04216 map04217 map04978
Pfam Domains
Protein Families
Ferritin

Protein Analysis

255

Amino Acids

28.18

Weight (kDa)

5.73

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 97 - 240 1.8e-34 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 44
AciI CCGC 6 cut(s) 30, 33, 42, 120, 123, 146
AclI AACGTT 2 cut(s) 369, 594
AclWI GGATC 1 cut(s) 617
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 3 cut(s) 392, 506, 653
AdeI CACNNNGTG 1 cut(s) 604
AfaI GTAC 3 cut(s) 335, 347, 449
AfiI CCNNNNNNNGG 2 cut(s) 179, 711
AgsI TTSAA 3 cut(s) 342, 400, 674
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 3 cut(s) 586, 635, 709
AluI AGCT 3 cut(s) 586, 635, 709
Alw26I GTCTC 5 cut(s) 54, 328, 357, 496, 564
AlwI GGATC 1 cut(s) 617
AoxI GGCC 4 cut(s) 3, 225, 606, 727
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 3 cut(s) 392, 506, 653
AseI ATTAAT 1 cut(s) 294
AsuHPI GGTGA 4 cut(s) 19, 220, 486, 694
AsuII TTCGAA 2 cut(s) 201, 510
AsuNHI GCTAGC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 227
BbvI GCAGC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 109
BcoDI GTCTC 5 cut(s) 54, 328, 357, 496, 564
BfaI CTAG 4 cut(s) 279, 386, 563, 766
BglI GCCNNNNNGGC 1 cut(s) 224
BglII AGATCT 1 cut(s) 687
BisI GCNGC 5 cut(s) 33, 121, 124, 144, 147
BlsI GCNGC 5 cut(s) 34, 122, 125, 145, 148
Bme1390I CCNGG 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 622
BmsI GCATC 2 cut(s) 520, 744
BmtI GCTAGC 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 622
BoxI GACNNNNGTC 1 cut(s) 182
BplI GAGNNNNNCTC 2 cut(s) 462, 494
BpmI CTGGAG 1 cut(s) 91
Bpu10I CCTNAGC 2 cut(s) 54, 710
Bpu14I TTCGAA 2 cut(s) 201, 510
BsaJI CCNNGG 1 cut(s) 730
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 456, 486
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 711
Bse1I ACTGG 1 cut(s) 628
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 730
BseGI GGATG 1 cut(s) 720
BseLI CCNNNNNNNGG 2 cut(s) 179, 711
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 4 cut(s) 423, 516, 624, 705
BseNI ACTGG 1 cut(s) 628
BseRI GAGGAG 1 cut(s) 477
BseXI GCAGC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 705
BshFI GGCC 4 cut(s) 5, 227, 608, 729
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 179, 711
BsmAI GTCTC 5 cut(s) 54, 328, 357, 496, 564
BsmBI CGTCTC 2 cut(s) 328, 496
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 4 cut(s) 5, 227, 608, 729
Bsp119I TTCGAA 2 cut(s) 201, 510
Bsp143I GATC 4 cut(s) 220, 622, 687, 717
BspACI CCGC 6 cut(s) 30, 33, 42, 120, 123, 146
BspANI GGCC 4 cut(s) 5, 227, 608, 729
BspCNI CTCAG 4 cut(s) 424, 515, 623, 704
BspOI GCTAGC 1 cut(s) 282
BspPI GGATC 1 cut(s) 617
BspT104I TTCGAA 2 cut(s) 201, 510
BsrBI CCGCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 1 cut(s) 628
BssECI CCNNGG 1 cut(s) 730
BssMI GATC 4 cut(s) 220, 622, 687, 717
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 3 cut(s) 198, 411, 463
BstBI TTCGAA 2 cut(s) 201, 510
BstC8I GCNNGC 3 cut(s) 259, 280, 429
BstDEI CTNAG 6 cut(s) 54, 432, 502, 610, 691, 710
BstDSI CCRYGG 1 cut(s) 730
BstF5I GGATG 1 cut(s) 720
BstKTI GATC 4 cut(s) 223, 625, 690, 720
BstMAI GTCTC 5 cut(s) 54, 328, 357, 496, 564
BstMBI GATC 4 cut(s) 220, 622, 687, 717
BstMWI GCNNNNNNNGC 6 cut(s) 11, 41, 224, 254, 284, 539
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 3 cut(s) 172, 431, 518
BstPAI GACNNNNGTC 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 687
BstYI RGATCY 1 cut(s) 687
BsuRI GGCC 4 cut(s) 5, 227, 608, 729
BtgI CCRYGG 1 cut(s) 730
BtsCI GGATG 1 cut(s) 720
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 3 cut(s) 259, 280, 429
CseI GACGC 1 cut(s) 284
Csp6I GTAC 3 cut(s) 334, 346, 448
CspCI CAANNNNNGTGG 2 cut(s) 719, 754
CviAII CATG 4 cut(s) 169, 245, 428, 515
CviQI GTAC 3 cut(s) 334, 346, 448
DdeI CTNAG 6 cut(s) 54, 432, 502, 610, 691, 710
DpnI GATC 4 cut(s) 222, 624, 689, 719
DpnII GATC 4 cut(s) 220, 622, 687, 717
DraIII CACNNNGTG 1 cut(s) 604
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 3 cut(s) 198, 411, 463
EarI CTCTTC 3 cut(s) 198, 411, 463
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 107
Esp3I CGTCTC 2 cut(s) 328, 496
FaeI CATG 4 cut(s) 172, 248, 431, 518
FaqI GGGAC 1 cut(s) 396
FatI CATG 4 cut(s) 168, 244, 427, 514
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 5 cut(s) 33, 121, 124, 144, 147
FokI GGATG 1 cut(s) 727
Fsp4HI GCNGC 5 cut(s) 33, 121, 124, 144, 147
FspBI CTAG 4 cut(s) 279, 386, 563, 766
GluI GCNGC 5 cut(s) 33, 121, 124, 144, 147
GsaI CCCAGC 1 cut(s) 709
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 4 cut(s) 5, 227, 608, 729
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 284
Hin1II CATG 4 cut(s) 172, 248, 431, 518
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 2 cut(s) 183, 404
HpaII CCGG 1 cut(s) 180
HphI GGTGA 4 cut(s) 19, 220, 486, 694
Hpy166II GTNNAC 3 cut(s) 157, 334, 598
Hpy188I TCNGA 4 cut(s) 505, 613, 694, 762
Hpy188III TCNNGA 2 cut(s) 563, 682
Hpy8I GTNNAC 3 cut(s) 157, 334, 598
Hpy99I CGWCG 2 cut(s) 91, 278
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 3 cut(s) 321, 369, 594
HpyCH4V TGCA 2 cut(s) 143, 542
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 41, 224, 254, 284, 539
HpyF3I CTNAG 6 cut(s) 54, 432, 502, 610, 691, 710
HpySE526I ACGT 3 cut(s) 321, 369, 594
Hsp92II CATG 4 cut(s) 172, 248, 431, 518
Kzo9I GATC 4 cut(s) 220, 622, 687, 717
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 2 cut(s) 520, 744
MaeI CTAG 4 cut(s) 279, 386, 563, 766
MaeII ACGT 3 cut(s) 321, 369, 594
MalI GATC 4 cut(s) 222, 624, 689, 719
MbiI CCGCTC 1 cut(s) 44
MboI GATC 4 cut(s) 220, 622, 687, 717
MboII GAAGA 5 cut(s) 215, 223, 428, 480, 697
MflI RGATCY 1 cut(s) 687
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 3 cut(s) 392, 506, 653
MluNI TGGCCA 1 cut(s) 227
MlyI GAGTC 1 cut(s) 192
Mox20I TGGCCA 1 cut(s) 227
MscI TGGCCA 1 cut(s) 227
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 146
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 6 cut(s) 11, 41, 224, 254, 284, 539
NdeII GATC 4 cut(s) 220, 622, 687, 717
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 4 cut(s) 172, 248, 431, 518
NmeAIII GCCGAG 1 cut(s) 78
NspI RCATGY 3 cut(s) 172, 431, 518
NspV TTCGAA 2 cut(s) 201, 510
PaeI GCATGC 1 cut(s) 431
PfeI GAWTC 1 cut(s) 404
PfoI TCCNGGA 1 cut(s) 107
PkrI GCNGC 5 cut(s) 34, 122, 125, 145, 148
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PshAI GACNNNNGTC 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 294
Psp1406I AACGTT 2 cut(s) 369, 594
Psp6I CCWGG 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 705
PspGI CCWGG 1 cut(s) 107
PsuI RGATCY 1 cut(s) 687
RsaI GTAC 3 cut(s) 335, 347, 449
RsaNI GTAC 3 cut(s) 334, 346, 448
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 5 cut(s) 33, 121, 124, 144, 147
Sau3AI GATC 4 cut(s) 220, 622, 687, 717
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 109
SetI ASST 9 cut(s) 210, 269, 324, 372, 499, 588, 597, 637, 711
SfaNI GCATC 2 cut(s) 520, 744
SfuI TTCGAA 2 cut(s) 201, 510
SmiMI CAYNNNNRTG 1 cut(s) 173
SphI GCATGC 1 cut(s) 431
Sse9I AATT 3 cut(s) 392, 506, 653
SsiI CCGC 6 cut(s) 30, 33, 42, 120, 123, 146
SspMI CTAG 4 cut(s) 279, 386, 563, 766
StyD4I CCNGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 3 cut(s) 324, 372, 597
TaqI TCGA 3 cut(s) 201, 510, 747
TasI AATT 3 cut(s) 392, 506, 653
TauI GCSGC 4 cut(s) 35, 123, 126, 149
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 138
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 392
TspGWI ACGGA 2 cut(s) 75, 747
TspRI CASTG 1 cut(s) 138
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 3 cut(s) 392, 506, 653
XbaI TCTAGA 1 cut(s) 562
XceI RCATGY 3 cut(s) 172, 431, 518
XspI CTAG 4 cut(s) 279, 386, 563, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.