Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005531.1

Orthogroup ID

OG0003525

Physical Location & Seq

Genomic Coordinates Reverse (-)

2716 .. 4609

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005531.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgcctttgactataagcccttcttcaacatccataatctcccaaagaccaaaccttggtttcttcaaaaacactggaccagctttcattaaactcccaaagagcaacaacaatggcaacgtgggtagtggtggtttggtaatattcgcctcaaatggggctaataatcgacaagcactggaggtggtgttcgagccctttgaggaggtcaagaaggagctccttctcgtcccaactgagcctaatgcttctcttgctcgccagaaatacacagacgaaagtgtagctgccattaatgaacaaatcaagtggaacaaacgtggaggaagagttaagctacagtccatgctaatgccctgctcagagtttgatcatgctgagaagggtgatgcgttgcacgcaatggagcttgcgcttgctttggaaaagctgaacaatgagaaacttctaaatctgcacaaaatagctaatgaaaacaatgatgtgcatttagcggattacattgaaagtgaatacttgaatgaacaggtcgaatctataaggaaaatttctgaatatgtagctcagttgagaaggattggtccaggacatggtgtttggcactttgatcagatgctccttaatgacacagccggggtcgccgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

215

Amino Acids

23.81

Weight (kDa)

5.89

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01600
fragaria_vesca	FvH4_3g19901 FvH4_6g10770 FvH4_6g10770
malus_domestica	MD03G1060600.v1.1 MD04G1164500.v1.1 MD12G1178200.v1.1 MD12G1178500.v1.1
prunus_persica	Prupe.6G050900_v2.0.a1 Prupe.6G283700_v2.0.a1 Prupe.6G283700_v2.0.a1
pyrus_communis	pycom04g14680 pycom12g16850
rosa_chinensis	RchiOBHm_Chr3g0461811 RchiOBHm_Chr5g0071231
rosa_laevigata	RLG00000024896 RLG00000036193
rosa_multiflora	Rmu_co7996016.1_g000001 Rmu_sc0004308.1_g000013 Rmu_sc0005531.1_g000002 Rmu_sc0006928.1_g000027
rosa_roxburghii	Rroxscaffold_1G00009910 Rroxscaffold_6G00417900
rosa_rugosa	Rorug03G0053900 Rorug05G0410700
rosa_samantha	Rh3AG111900 Rh3BG115200 Rh3DG116900 Rh5AG466700 Rh5BG485200 Rh5CG509600 Rh5DG496500
rosa_wichuraiana	Rw3G009490 Rw5G043350 Rw5G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	56, 590
AciI	CCGC	2 cut(s)	494, 642
AcsI	RAATTY	1 cut(s)	546
AfiI	CCNNNNNNNGG	3 cut(s)	56, 156, 590
AgsI	TTSAA	4 cut(s)	27, 67, 506, 520
AjnI	CCWGG	1 cut(s)	583
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	8 cut(s)	83, 220, 287, 337, 409, 430, 467, 563
AluI	AGCT	8 cut(s)	83, 220, 287, 337, 409, 430, 467, 563
Alw21I	GWGCWC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	546
ArsI	GACNNNNNNTTYG	2 cut(s)	579, 611
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	2 cut(s)	77, 581
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	2 cut(s)	77, 581
BanII	GRGCYC	2 cut(s)	198, 222
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	585
BclI	TGATCA	2 cut(s)	370, 607
BcnI	CCSGG	1 cut(s)	634
BfmI	CTRYAG	1 cut(s)	338
BisI	GCNGC	2 cut(s)	288, 642
BlsI	GCNGC	2 cut(s)	289, 643
Bme1390I	CCNGG	2 cut(s)	585, 634
Bme18I	GGWCC	2 cut(s)	77, 581
BmgT120I	GGNCC	2 cut(s)	77, 581
BmrFI	CCNGG	2 cut(s)	585, 634
BmsI	GCATC	2 cut(s)	379, 603
BpmI	CTGGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	634
BsaJI	CCNNGG	2 cut(s)	55, 633
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 315, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 156, 590
Bse1I	ACTGG	2 cut(s)	79, 183
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	2 cut(s)	55, 633
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	3 cut(s)	56, 156, 590
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	4 cut(s)	228, 369, 375, 578
BseNI	ACTGG	2 cut(s)	79, 183
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	633
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	56, 156, 590
BsmFI	GGGAC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	198, 222
Bsp143I	GATC	2 cut(s)	370, 607
BspACI	CCGC	2 cut(s)	494, 642
BspCNI	CTCAG	4 cut(s)	229, 370, 374, 577
BsrDI	GCAATG	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	79, 183
BssECI	CCNNGG	2 cut(s)	55, 633
BssMI	GATC	2 cut(s)	370, 607
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	322
BstC8I	GCNNGC	4 cut(s)	259, 399, 411, 417
BstDEI	CTNAG	4 cut(s)	237, 361, 378, 564
BstF5I	GGATG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	2 cut(s)	373, 610
BstMBI	GATC	2 cut(s)	370, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 398, 638
BstNI	CCWGG	1 cut(s)	585
BstSCI	CCNGG	2 cut(s)	583, 632
BstSFI	CTRYAG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	72, 176
Cac8I	GCNNGC	4 cut(s)	259, 399, 411, 417
CfoI	GCGC	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	77, 581
CspCI	CAANNNNNGTGG	2 cut(s)	290, 325
CviAII	CATG	4 cut(s)	346, 374, 590, 645
DdeI	CTNAG	4 cut(s)	237, 361, 378, 564
DpnI	GATC	2 cut(s)	372, 609
DpnII	GATC	2 cut(s)	370, 607
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	198, 222
Eco47I	GGWCC	2 cut(s)	77, 581
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	198, 222
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	4 cut(s)	349, 377, 593, 648
FaiI	YATR	8 cut(s)	14, 35, 347, 375, 539, 558, 591, 646
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	4 cut(s)	345, 373, 589, 644
FbaI	TGATCA	2 cut(s)	370, 607
Fnu4HI	GCNGC	2 cut(s)	288, 642
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	2 cut(s)	198, 222
Fsp4HI	GCNGC	2 cut(s)	288, 642
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	2 cut(s)	288, 642
GsuI	CTGGAG	1 cut(s)	200
HapII	CCGG	1 cut(s)	633
HhaI	GCGC	1 cut(s)	415
Hin1II	CATG	4 cut(s)	349, 377, 593, 648
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HinfI	GANTC	1 cut(s)	533
HpaII	CCGG	1 cut(s)	633
HphI	GGTGA	1 cut(s)	398
Hpy188I	TCNGA	3 cut(s)	364, 553, 612
Hpy188III	TCNNGA	1 cut(s)	211
HpyAV	CCTTC	5 cut(s)	30, 208, 233, 376, 567
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	2 cut(s)	120, 319
HpyCH4V	TGCA	3 cut(s)	397, 457, 487
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 398, 638
HpyF3I	CTNAG	4 cut(s)	237, 361, 378, 564
HpySE526I	ACGT	2 cut(s)	120, 319
Hsp92II	CATG	4 cut(s)	349, 377, 593, 648
HspAI	GCGC	1 cut(s)	413
Ksp22I	TGATCA	2 cut(s)	370, 607
Kzo9I	GATC	2 cut(s)	370, 607
LmnI	GCTCC	4 cut(s)	217, 225, 406, 621
LpnPI	CCDG	8 cut(s)	60, 93, 164, 275, 370, 512, 570, 597
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	2 cut(s)	379, 603
MaeII	ACGT	2 cut(s)	120, 319
MalI	GATC	2 cut(s)	372, 609
MboI	GATC	2 cut(s)	370, 607
MboII	GAAGA	3 cut(s)	15, 55, 339
MhlI	GDGCHC	2 cut(s)	198, 222
MluCI	AATT	1 cut(s)	546
MnlI	CCTC	5 cut(s)	160, 175, 196, 199, 317
MseI	TTAA	4 cut(s)	90, 294, 333, 621
MslI	CAYNNNNRTG	1 cut(s)	350
MspI	CCGG	1 cut(s)	633
MspR9I	CCNGG	2 cut(s)	585, 634
MvaI	CCWGG	1 cut(s)	585
MwoI	GCNNNNNNNGC	3 cut(s)	254, 398, 638
NciI	CCSGG	1 cut(s)	634
NdeII	GATC	2 cut(s)	370, 607
NlaIII	CATG	4 cut(s)	349, 377, 593, 648
PfeI	GAWTC	1 cut(s)	533
PflMI	CCANNNNNTGG	2 cut(s)	56, 590
PfoI	TCCNGGA	1 cut(s)	583
PkrI	GCNGC	2 cut(s)	289, 643
PshBI	ATTAAT	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspPI	GGNCC	2 cut(s)	77, 581
RseI	CAYNNNNRTG	1 cut(s)	350
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	4 cut(s)	90, 294, 333, 621
SatI	GCNGC	2 cut(s)	288, 642
Sau3AI	GATC	2 cut(s)	370, 607
Sau96I	GGNCC	2 cut(s)	77, 581
ScrFI	CCNGG	2 cut(s)	585, 634
SduI	GDGCHC	2 cut(s)	198, 222
SfaNI	GCATC	2 cut(s)	379, 603
SfcI	CTRYAG	1 cut(s)	338
SinI	GGWCC	2 cut(s)	77, 581
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	546
SsiI	CCGC	2 cut(s)	494, 642
SspI	AATATT	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	583, 632
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	2 cut(s)	123, 322
TaqI	TCGA	3 cut(s)	169, 192, 531
TasI	AATT	1 cut(s)	546
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	4 cut(s)	90, 294, 333, 621
Tru9I	TTAA	4 cut(s)	90, 294, 333, 621
TscAI	CASTG	2 cut(s)	79, 183
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	76, 312, 486, 537
TspRI	CASTG	2 cut(s)	79, 183
Van91I	CCANNNNNTGG	2 cut(s)	56, 590
VpaK11BI	GGWCC	2 cut(s)	77, 581
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.