Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003525

Physical Location & Seq

Genomic Coordinates Reverse (-)

71179283 .. 71181567

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG509600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCCTTTGACTATAAGCCCTTCTTCAACAACCATAATCTCCCAAAGACCAAACCTTGGTTTCTTCAAAAACACTGGACCAGCTTTCATTAAACTCCCAAAGGGCAACAACAATGGCAACGTAGGTAGTGGTGGTTTGGTAATATTCGCCTCAAATGGGGCTAATAATCGACAAGCACTGGAGGTGGTGTTCGAGCCCTTTGAGGAGGTCAAGAAGGAGCTCCTTCTCGTCCCAACTGATCCTAATGCTTCTCTTGCTCGCCAGAAATACACAGACGAAAGTGTAGCTGCCATTAATGAACAAATCAATGTGGAATACAATGTCTCCTATGTGTACCATGCCATCTATGCCTACTTTGACAGAGACAATGTTGCTCTTAAGGGATTTGCCAAGTTTTTCAAAGAATCAAGCGCAGAAGAAAGGGGGCATGCTGAAAAACTGATGGAATATCAGAACAAACGTGGAGGAAGAGTTAAGCTACAGTCCATGCTAATGCCCTGCTCAGAGTTTGATCATGCTGAGAAGGGTGATGCGTTGCACGCAATGGAGCTTGCGCTTGCTTTGGAAAAGCTGAACAATGAGAAACTTCTAAATCTGCACAAAGTAAGTGACTTTTTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

207

Amino Acids

23.06

Weight (kDa)

6.23

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferritin	PF00210	96 - 204	2.1e-23	Ferritin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01600
fragaria_vesca	FvH4_3g19901 FvH4_6g10770 FvH4_6g10770
malus_domestica	MD03G1060600.v1.1 MD04G1164500.v1.1 MD12G1178200.v1.1 MD12G1178500.v1.1
prunus_persica	Prupe.6G050900_v2.0.a1 Prupe.6G283700_v2.0.a1 Prupe.6G283700_v2.0.a1
pyrus_communis	pycom04g14680 pycom12g16850
rosa_chinensis	RchiOBHm_Chr3g0461811 RchiOBHm_Chr5g0071231
rosa_laevigata	RLG00000024896 RLG00000036193
rosa_multiflora	Rmu_co7996016.1_g000001 Rmu_sc0004308.1_g000013 Rmu_sc0005531.1_g000002 Rmu_sc0006928.1_g000027
rosa_roxburghii	Rroxscaffold_1G00009910 Rroxscaffold_6G00417900
rosa_rugosa	Rorug03G0053900 Rorug05G0410700
rosa_samantha	Rh3AG111900 Rh3BG115200 Rh3DG116900 Rh5AG466700 Rh5BG485200 Rh5CG509600 Rh5DG496500
rosa_wichuraiana	Rw3G009490 Rw5G043350 Rw5G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	56
AclWI	GGATC	1 cut(s)	233
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	56, 156
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	27, 67, 400
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	6 cut(s)	83, 220, 287, 478, 550, 571
AluI	AGCT	6 cut(s)	83, 220, 287, 478, 550, 571
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	328, 357
AlwI	GGATC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	287
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	413, 556
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	77
BanII	GRGCYC	2 cut(s)	198, 222
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	2 cut(s)	350, 436
BclI	TGATCA	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	328, 357
BfmI	CTRYAG	1 cut(s)	479
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmsI	GCATC	1 cut(s)	520
BpmI	CTGGAG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	55
BsaXI	ACNNNNNCTCC	6 cut(s)	173, 203, 308, 338, 456, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 156
Bse1I	ACTGG	2 cut(s)	79, 183
Bse3DI	GCAATG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	56, 156
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	510, 516
BseNI	ACTGG	2 cut(s)	79, 183
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	56, 156
BsmAI	GTCTC	2 cut(s)	328, 357
BsmFI	GGGAC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	198, 222
Bsp143I	GATC	2 cut(s)	238, 511
BspCNI	CTCAG	2 cut(s)	511, 515
BspPI	GGATC	1 cut(s)	233
BspTI	CTTAAG	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	79, 183
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	238, 511
BssT1I	CCWWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	483, 621
Bst6I	CTCTTC	1 cut(s)	463
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	5 cut(s)	259, 429, 540, 552, 558
BstDEI	CTNAG	2 cut(s)	502, 519
BstHHI	GCGC	2 cut(s)	413, 556
BstKTI	GATC	2 cut(s)	241, 514
BstMAI	GTCTC	2 cut(s)	328, 357
BstMBI	GATC	2 cut(s)	238, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 347, 539
BstNSI	RCATGY	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	72, 176
Cac8I	GCNNGC	5 cut(s)	259, 429, 540, 552, 558
CfoI	GCGC	2 cut(s)	413, 556
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	4 cut(s)	338, 428, 487, 515
CviJI	RGCY	9 cut(s)	18, 83, 161, 196, 220, 287, 478, 550, 571
CviKI_1	RGCY	9 cut(s)	18, 83, 161, 196, 220, 287, 478, 550, 571
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	2 cut(s)	502, 519
DpnI	GATC	2 cut(s)	240, 513
DpnII	GATC	2 cut(s)	238, 511
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	198, 222
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	198, 222
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	4 cut(s)	341, 431, 490, 518
FaiI	YATR	8 cut(s)	14, 35, 330, 339, 348, 429, 488, 516
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	4 cut(s)	337, 427, 486, 514
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	1 cut(s)	288
FriOI	GRGCYC	2 cut(s)	198, 222
Fsp4HI	GCNGC	1 cut(s)	288
GlaI	GCGC	2 cut(s)	412, 555
GluI	GCNGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	200
HhaI	GCGC	2 cut(s)	413, 556
Hin1II	CATG	4 cut(s)	341, 431, 490, 518
Hin6I	GCGC	2 cut(s)	411, 554
HinP1I	GCGC	2 cut(s)	411, 554
HinfI	GANTC	1 cut(s)	404
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	453, 505
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	4 cut(s)	30, 208, 233, 517
HpyCH4III	ACNGT	2 cut(s)	483, 621
HpyCH4IV	ACGT	2 cut(s)	120, 460
HpyCH4V	TGCA	2 cut(s)	538, 598
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 347, 539
HpyF3I	CTNAG	2 cut(s)	502, 519
HpySE526I	ACGT	2 cut(s)	120, 460
Hsp92II	CATG	4 cut(s)	341, 431, 490, 518
HspAI	GCGC	2 cut(s)	411, 554
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	238, 511
LmnI	GCTCC	3 cut(s)	217, 225, 547
LpnPI	CCDG	5 cut(s)	60, 93, 164, 275, 511
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	520
MaeII	ACGT	2 cut(s)	120, 460
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	2 cut(s)	240, 513
MboI	GATC	2 cut(s)	238, 511
MboII	GAAGA	4 cut(s)	15, 55, 428, 480
MhlI	GDGCHC	2 cut(s)	198, 222
MnlI	CCTC	5 cut(s)	160, 175, 196, 199, 458
MseI	TTAA	4 cut(s)	90, 294, 378, 474
MslI	CAYNNNNRTG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	254, 347, 539
NdeII	GATC	2 cut(s)	238, 511
NlaIII	CATG	4 cut(s)	341, 431, 490, 518
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	404
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	77
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	491
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	4 cut(s)	90, 294, 378, 474
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	2 cut(s)	238, 511
Sau96I	GGNCC	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	198, 222
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	1 cut(s)	431
SspI	AATATT	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	483, 621
TaiI	ACGT	2 cut(s)	123, 463
TaqI	TCGA	2 cut(s)	169, 192
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	4 cut(s)	90, 294, 378, 474
Tru9I	TTAA	4 cut(s)	90, 294, 378, 474
TscAI	CASTG	2 cut(s)	79, 183
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	2 cut(s)	76, 312
TspRI	CASTG	2 cut(s)	79, 183
Van91I	CCANNNNNTGG	1 cut(s)	56
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	77
VspI	ATTAAT	1 cut(s)	294
XceI	RCATGY	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.