Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004308.1

Orthogroup ID

OG0003525

Physical Location & Seq

Genomic Coordinates Forward (+)

57951 .. 60570

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004308.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgtctgtgaggagcgtttcgagttttttggtctcgagcaagcaaggggatggtggtgctggttttagcagcagcagcctcttgttgaagggctcaaaacttggatcttcttcctcttctggtctgagttttaatcagcagagaaaacccagaaaccttgtggtttctgcgttgaacgagacggtgctgactggtgttgtgttccaaccatttgaagaggtcaagaaggaggctcttgctgttcccgtggcacatcatgtttcgcttgctcgtcagtgttttgcagatgagtgtgaagctgcgataaacgagcagatcaatgtggaatacaatgtgtcgtatgtgtaccattccatgtttgcatattttgacagggacaatgttgctcttaggggcatggccaagttttacaaggaatcaagtgaggaagaaagagagcatgctgaaaaactgatgaaatatcagaatatacgtggtggaagagttaagctacactctattataaatcccccttcagaatttgagcatgttgagaagggagatgcattgtatgctatggagttagctttgtctttggagaagctgacaaatgaaaagctcttgagtttgcatagggtggcagcggagaacaatgatgctcaaatgacagagtttgtcgagagggagtttcttagtgagcaggttgaagccattaagaagatagctgagtatgtcacccagttgaggatggttggaaaaggacatggagtgtggcactttgatcaacagctccttcatcaagaggagatgctgcatcttggaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

268

Amino Acids

30.11

Weight (kDa)

5.9

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01600
fragaria_vesca	FvH4_3g19901 FvH4_6g10770 FvH4_6g10770
malus_domestica	MD03G1060600.v1.1 MD04G1164500.v1.1 MD12G1178200.v1.1 MD12G1178500.v1.1
prunus_persica	Prupe.6G050900_v2.0.a1 Prupe.6G283700_v2.0.a1 Prupe.6G283700_v2.0.a1
pyrus_communis	pycom04g14680 pycom12g16850
rosa_chinensis	RchiOBHm_Chr3g0461811 RchiOBHm_Chr5g0071231
rosa_laevigata	RLG00000024896 RLG00000036193
rosa_multiflora	Rmu_co7996016.1_g000001 Rmu_sc0004308.1_g000013 Rmu_sc0005531.1_g000002 Rmu_sc0006928.1_g000027
rosa_roxburghii	Rroxscaffold_1G00009910 Rroxscaffold_6G00417900
rosa_rugosa	Rorug03G0053900 Rorug05G0410700
rosa_samantha	Rh3AG111900 Rh3BG115200 Rh3DG116900 Rh5AG466700 Rh5BG485200 Rh5CG509600 Rh5DG496500
rosa_wichuraiana	Rw3G009490 Rw5G043350 Rw5G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
Acc36I	ACCTGC	1 cut(s)	670
AciI	CCGC	1 cut(s)	623
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	498
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	723
AgsI	TTSAA	4 cut(s)	88, 175, 215, 686
AluBI	AGCT	7 cut(s)	299, 490, 566, 583, 598, 704, 769
AluI	AGCT	7 cut(s)	299, 490, 566, 583, 598, 704, 769
Alw26I	GTCTC	2 cut(s)	37, 173
AlwI	GGATC	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	6 cut(s)	69, 72, 75, 299, 620, 790
ApoI	RAATTY	1 cut(s)	518
AsuHPI	GGTGA	1 cut(s)	706
AvaI	CYCGRG	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	95
BbvI	GCAGC	6 cut(s)	81, 84, 87, 286, 632, 777
BccI	CCATC	2 cut(s)	44, 721
BclI	TGATCA	1 cut(s)	760
BcoDI	GTCTC	2 cut(s)	37, 173
BfuAI	ACCTGC	1 cut(s)	670
BisI	GCNGC	6 cut(s)	70, 73, 76, 300, 621, 791
BlsI	GCNGC	6 cut(s)	71, 74, 77, 301, 622, 792
BmeT110I	CYCGRG	1 cut(s)	34
BmrI	ACTGGG	1 cut(s)	712
BmsI	GCATC	4 cut(s)	532, 625, 777, 802
BmuI	ACTGGG	1 cut(s)	712
BpuEI	CTTGAG	1 cut(s)	622
BsaAI	YACGTR	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	723
Bse1I	ACTGG	2 cut(s)	196, 718
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	55, 732
BseLI	CCNNNNNNNGG	1 cut(s)	723
BseMII	CTCAG	2 cut(s)	116, 696
BseNI	ACTGG	2 cut(s)	196, 718
BseRI	GAGGAG	2 cut(s)	25, 797
BseXI	GCAGC	6 cut(s)	81, 84, 87, 286, 632, 777
BshFI	GGCC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	723
BsmAI	GTCTC	2 cut(s)	37, 173
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	401
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	3 cut(s)	104, 315, 760
BspACI	CCGC	1 cut(s)	623
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	2 cut(s)	117, 697
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	37
BsrI	ACTGG	2 cut(s)	196, 718
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	3 cut(s)	104, 315, 760
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	3 cut(s)	121, 210, 475
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	3 cut(s)	41, 267, 441
BstDEI	CTNAG	4 cut(s)	125, 389, 671, 705
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	55, 732
BstKTI	GATC	3 cut(s)	107, 318, 763
BstMAI	GTCTC	2 cut(s)	37, 173
BstMBI	GATC	3 cut(s)	104, 315, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 551
BstNSI	RCATGY	2 cut(s)	443, 530
BstV1I	GCAGC	6 cut(s)	81, 84, 87, 286, 632, 777
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	55, 732
BtsIMutI	CAGTG	1 cut(s)	281
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	3 cut(s)	41, 267, 441
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	6 cut(s)	257, 355, 397, 440, 527, 743
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	4 cut(s)	125, 389, 671, 705
DpnI	GATC	3 cut(s)	106, 317, 762
DpnII	GATC	3 cut(s)	104, 315, 760
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	3 cut(s)	121, 210, 475
EarI	CTCTTC	3 cut(s)	121, 210, 475
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	95
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	6 cut(s)	260, 358, 400, 443, 530, 746
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	6 cut(s)	256, 354, 396, 439, 526, 742
FbaI	TGATCA	1 cut(s)	760
Fnu4HI	GCNGC	6 cut(s)	70, 73, 76, 300, 621, 791
FokI	GGATG	2 cut(s)	62, 739
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	6 cut(s)	70, 73, 76, 300, 621, 791
GluI	GCNGC	6 cut(s)	70, 73, 76, 300, 621, 791
HaeIII	GGCC	1 cut(s)	401
Hin1II	CATG	6 cut(s)	260, 358, 400, 443, 530, 746
HinfI	GANTC	1 cut(s)	416
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	3 cut(s)	126, 465, 517
Hpy188III	TCNNGA	5 cut(s)	34, 223, 601, 658, 779
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	5 cut(s)	82, 220, 522, 529, 782
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	5 cut(s)	284, 362, 545, 610, 793
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 551
HpyF3I	CTNAG	4 cut(s)	125, 389, 671, 705
HpySE526I	ACGT	1 cut(s)	472
Hsp92II	CATG	6 cut(s)	260, 358, 400, 443, 530, 746
Ksp22I	TGATCA	1 cut(s)	760
Kzo9I	GATC	3 cut(s)	104, 315, 760
LmnI	GCTCC	2 cut(s)	12, 774
LpnPI	CCDG	7 cut(s)	45, 105, 163, 177, 358, 665, 731
Lsp1109I	GCAGC	6 cut(s)	81, 84, 87, 286, 632, 777
LweI	GCATC	4 cut(s)	532, 625, 777, 802
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	712
MalI	GATC	3 cut(s)	106, 317, 762
MboI	GATC	3 cut(s)	104, 315, 760
MboII	GAAGA	7 cut(s)	99, 102, 108, 227, 440, 492, 709
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	2 cut(s)	518, 802
MluNI	TGGCCA	1 cut(s)	401
MmeI	TCCRAC	2 cut(s)	229, 712
MnlI	CCTC	9 cut(s)	3, 89, 124, 211, 223, 418, 654, 717, 775
Mox20I	TGGCCA	1 cut(s)	401
Mph1103I	ATGCAT	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	3 cut(s)	132, 486, 693
Msp20I	TGGCCA	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	623
MwoI	GCNNNNNNNGC	2 cut(s)	75, 551
NdeII	GATC	3 cut(s)	104, 315, 760
NlaIII	CATG	6 cut(s)	260, 358, 400, 443, 530, 746
NmuCI	GTSAC	1 cut(s)	712
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	2 cut(s)	443, 530
PaeI	GCATGC	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	6 cut(s)	71, 74, 77, 301, 622, 792
Ppu21I	YACGTR	1 cut(s)	473
PsiI	TTATAA	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	3 cut(s)	132, 486, 693
SatI	GCNGC	6 cut(s)	70, 73, 76, 300, 621, 791
Sau3AI	GATC	3 cut(s)	104, 315, 760
SduI	GDGCHC	1 cut(s)	95
SfaNI	GCATC	4 cut(s)	532, 625, 777, 802
Sfr274I	CTCGAG	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	34, 601
SmoI	CTYRAG	2 cut(s)	34, 601
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	2 cut(s)	518, 802
SsiI	CCGC	1 cut(s)	623
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	3 cut(s)	20, 35, 657
TasI	AATT	2 cut(s)	518, 802
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	132, 486, 693
Tru9I	TTAA	3 cut(s)	132, 486, 693
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	6 cut(s)	69, 72, 75, 299, 620, 790
Tsp45I	GTSAC	1 cut(s)	712
TspDTI	ATGAA	3 cut(s)	470, 606, 764
TspRI	CASTG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	2 cut(s)	443, 530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	34
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.