Rh3AG111900

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003525
Physical Location & Seq
Forward (+)
9478055 .. 9484376
6322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG111900.1

Sequence Viewer

Length: 813 bp
ATGGCAATGTCTCTGAGGAGCGTTTCGAGTTTTTTGGTCTCGAGCAAGCAAGGGGATGGTGGTGCTGGTTTTAGCAGCAGCAGCCTCTTGTTGAAGGGCTCAAAACTTGGATCTTCTTCCTCTTCTGGTCTGAGTTTTAATCAGCAGAGAAAACCCAGAAACCTTGTGGTTTCTGCGTTGAACGAGACGGTGCTGACTGGTGTTGTGTTCCAACCATTTGAAGAGGTCAAGAAGGAGGCTCTTGCTGTTCCTGTGGCACATCATGTTTCGCTTGCTCGTCAGTGTTTTGCAGATGAGTGTGAAGCTGCGATAAACGAGCAGATCAATGTGGAATACAATGTGTCGTATGTGTACCATTCCATGTTTGCATATTTTGACAGGGATAATGTTGCTCTTAGGGGCATGGCCAAGTTTTACAAGGAATCAAGTGAGGAAGAAAGAGAGCATGCTGAAAAACTGATGAAATATCAGAATATACGTGGTGGAAGAGTTAAGCTACACTCTATTATAAATCCCCCTTCAGAATTTGAGCATGTTGAGAAGGGAGATGCATTGTATGCTATGGAGTTAGCTTTGTCTTTGGAGAAGCTGACAAATGAAAAGCTCTTGAGTTTGCATAGGGTGGCAGAGGAGAACAATGATGCTCAAATGACAGAGTTTGTCGAGAGGGAGTTTCTTAGTGAGCAGGTTGAAGCCATTAAGAAGATAGCTGAGTATGTCACCCAGTTGAGGATGGTTGGAAAAGGACATGGAGTGTGGCACTTTGATCAACAGCTCCTTCATCAAGAGGAGATGCTGCATCTTGGAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04216 ko04217 ko04978 map04216 map04217 map04978
Pfam Domains
Protein Families
Ferritin

Protein Analysis

270

Amino Acids

30.39

Weight (kDa)

5.8

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin PF00210 102 - 245 7.9e-32 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 676
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 729
AgsI TTSAA 4 cut(s) 94, 181, 221, 692
AluBI AGCT 7 cut(s) 305, 496, 572, 589, 604, 710, 775
AluI AGCT 7 cut(s) 305, 496, 572, 589, 604, 710, 775
Alw26I GTCTC 3 cut(s) 15, 43, 179
AlwI GGATC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 5 cut(s) 75, 78, 81, 305, 796
ApoI RAATTY 1 cut(s) 524
AsuHPI GGTGA 1 cut(s) 712
AvaI CYCGRG 1 cut(s) 40
BalI TGGCCA 1 cut(s) 407
BanII GRGCYC 1 cut(s) 101
BbvI GCAGC 5 cut(s) 87, 90, 93, 292, 783
BccI CCATC 2 cut(s) 50, 727
BclI TGATCA 1 cut(s) 766
BcoDI GTCTC 3 cut(s) 15, 43, 179
BfuAI ACCTGC 1 cut(s) 676
BisI GCNGC 5 cut(s) 76, 79, 82, 306, 797
BlsI GCNGC 5 cut(s) 77, 80, 83, 307, 798
BmeT110I CYCGRG 1 cut(s) 40
BmrI ACTGGG 1 cut(s) 718
BmsI GCATC 4 cut(s) 538, 631, 783, 808
BmuI ACTGGG 1 cut(s) 718
BpuEI CTTGAG 1 cut(s) 628
BsaAI YACGTR 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 729
Bse1I ACTGG 2 cut(s) 202, 724
Bse3DI GCAATG 1 cut(s) 12
BseGI GGATG 2 cut(s) 61, 738
BseLI CCNNNNNNNGG 1 cut(s) 729
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 5, 122, 702
BseNI ACTGG 2 cut(s) 202, 724
BseRI GAGGAG 3 cut(s) 31, 644, 803
BseXI GCAGC 5 cut(s) 87, 90, 93, 292, 783
BshFI GGCC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 729
BsmAI GTCTC 3 cut(s) 15, 43, 179
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 1 cut(s) 407
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 3 cut(s) 110, 321, 766
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 3 cut(s) 6, 123, 703
BspMI ACCTGC 1 cut(s) 676
BspPI GGATC 1 cut(s) 118
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 2 cut(s) 202, 724
BssMI GATC 3 cut(s) 110, 321, 766
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 3 cut(s) 127, 216, 481
BstAPI GCANNNNNTGC 1 cut(s) 557
BstBAI YACGTR 1 cut(s) 479
BstC8I GCNNGC 3 cut(s) 47, 273, 447
BstDEI CTNAG 5 cut(s) 14, 131, 395, 677, 711
BstF5I GGATG 2 cut(s) 61, 738
BstKTI GATC 3 cut(s) 113, 324, 769
BstMAI GTCTC 3 cut(s) 15, 43, 179
BstMBI GATC 3 cut(s) 110, 321, 766
BstMWI GCNNNNNNNGC 2 cut(s) 81, 557
BstNSI RCATGY 2 cut(s) 449, 536
BstV1I GCAGC 5 cut(s) 87, 90, 93, 292, 783
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuRI GGCC 1 cut(s) 407
BtsCI GGATG 2 cut(s) 61, 738
BtsIMutI CAGTG 1 cut(s) 287
BveI ACCTGC 1 cut(s) 676
Cac8I GCNNGC 3 cut(s) 47, 273, 447
Csp6I GTAC 1 cut(s) 352
CviAII CATG 6 cut(s) 263, 361, 403, 446, 533, 749
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 5 cut(s) 14, 131, 395, 677, 711
DpnI GATC 3 cut(s) 112, 323, 768
DpnII GATC 3 cut(s) 110, 321, 766
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 3 cut(s) 127, 216, 481
EarI CTCTTC 3 cut(s) 127, 216, 481
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 6 cut(s) 266, 364, 406, 449, 536, 752
FatI CATG 6 cut(s) 262, 360, 402, 445, 532, 748
FbaI TGATCA 1 cut(s) 766
Fnu4HI GCNGC 5 cut(s) 76, 79, 82, 306, 797
FokI GGATG 2 cut(s) 68, 745
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 5 cut(s) 76, 79, 82, 306, 797
GluI GCNGC 5 cut(s) 76, 79, 82, 306, 797
HaeIII GGCC 1 cut(s) 407
Hin1II CATG 6 cut(s) 266, 364, 406, 449, 536, 752
HinfI GANTC 1 cut(s) 422
HphI GGTGA 1 cut(s) 712
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 4 cut(s) 15, 132, 471, 523
Hpy188III TCNNGA 5 cut(s) 40, 229, 607, 664, 785
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 5 cut(s) 88, 226, 528, 535, 788
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 5 cut(s) 290, 368, 551, 616, 799
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 557
HpyF3I CTNAG 5 cut(s) 14, 131, 395, 677, 711
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 6 cut(s) 266, 364, 406, 449, 536, 752
Ksp22I TGATCA 1 cut(s) 766
Kzo9I GATC 3 cut(s) 110, 321, 766
LmnI GCTCC 2 cut(s) 18, 780
LpnPI CCDG 8 cut(s) 51, 111, 169, 183, 264, 364, 671, 737
Lsp1109I GCAGC 5 cut(s) 87, 90, 93, 292, 783
LweI GCATC 4 cut(s) 538, 631, 783, 808
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 1 cut(s) 718
MalI GATC 3 cut(s) 112, 323, 768
MboI GATC 3 cut(s) 110, 321, 766
MboII GAAGA 7 cut(s) 105, 108, 114, 233, 446, 498, 715
MflI RGATCY 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 101
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 2 cut(s) 524, 808
MluNI TGGCCA 1 cut(s) 407
MmeI TCCRAC 2 cut(s) 235, 718
Mox20I TGGCCA 1 cut(s) 407
Mph1103I ATGCAT 1 cut(s) 553
MscI TGGCCA 1 cut(s) 407
MseI TTAA 3 cut(s) 138, 492, 699
Msp20I TGGCCA 1 cut(s) 407
MwoI GCNNNNNNNGC 2 cut(s) 81, 557
NdeII GATC 3 cut(s) 110, 321, 766
NlaIII CATG 6 cut(s) 266, 364, 406, 449, 536, 752
NmuCI GTSAC 1 cut(s) 718
NsiI ATGCAT 1 cut(s) 553
NspI RCATGY 2 cut(s) 449, 536
PaeI GCATGC 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 40
PfeI GAWTC 1 cut(s) 422
PkrI GCNGC 5 cut(s) 77, 80, 83, 307, 798
Ppu21I YACGTR 1 cut(s) 479
PsiI TTATAA 1 cut(s) 509
PsuI RGATCY 1 cut(s) 110
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SaqAI TTAA 3 cut(s) 138, 492, 699
SatI GCNGC 5 cut(s) 76, 79, 82, 306, 797
Sau3AI GATC 3 cut(s) 110, 321, 766
SduI GDGCHC 1 cut(s) 101
SfaNI GCATC 4 cut(s) 538, 631, 783, 808
Sfr274I CTCGAG 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 40
SmlI CTYRAG 2 cut(s) 40, 607
SmoI CTYRAG 2 cut(s) 40, 607
SphI GCATGC 1 cut(s) 449
Sse9I AATT 2 cut(s) 524, 808
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 481
TaqI TCGA 3 cut(s) 26, 41, 663
TasI AATT 2 cut(s) 524, 808
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 3 cut(s) 138, 492, 699
Tru9I TTAA 3 cut(s) 138, 492, 699
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 5 cut(s) 75, 78, 81, 305, 796
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 3 cut(s) 476, 612, 770
TspRI CASTG 1 cut(s) 287
XapI RAATTY 1 cut(s) 524
XceI RCATGY 2 cut(s) 449, 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 40
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.