Rorug05G0410700

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
56706490 .. 56715458
8969 bp
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UTR
Exon/CDS
Intron
Rorug05G0410700.1

Sequence Viewer

Length: 621 bp
ATGTCCTCTAGTCGGGATGGGTTCAAGGAGGATTTTGTGGGAATTGGTTGGAGGATGCAAACAGCAAGAGGGCGTCTCAAGGCCCTGAAAGACTGTGACAGACTCAAGGAGGAAGATCAAAATTGGTGTCGCCGATCTTTGGCGTGGAATGGGGTGGACTGGATCTCGGCCTCTGAGGCTTGTAGGCAACGCAATGCTTTTAGTATGCTTATGGAAGTGAGAGCAGTGAAGAGAAGACTGCCGCTGGTTCAATTTTGGATGGGTGTTGAAGGCGGCGGAGGGGCGCTCAGAGTTGAGTTGTGGTTGATGAGCTGTGTTGGAGTAGAGAGATTAGAAGGAGATGACAGTTGGCAGAGGAGATCAGATATCTTTACCTTCAATATAATGGTGCACGCTTGTGCTAAGAGATGGAACTTTTCAGAGTTGGATCTTATATTGCTTTTGTTGGCAAAGGAAGGAGTGGCATTTGAGGTCAAGACATATCAAGCTGTCTTAAAGAAATTCGCTGTCACAGAAATTTCTCAGGTGCAAAGTCTCAAGGCACCAAGCAGCTTTGACTTATGGAGTGCAGGATGTGCTCATCTCTCCATAGATTCATTCAGCACATTTAATATTTTTTAG

Protein Analysis

206

Amino Acids

23.55

Weight (kDa)

8.56

Isoelectric Point (pI)

64.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 541
AciI CCGC 3 cut(s) 242, 273, 276
AclWI GGATC 2 cut(s) 170, 435
AcsI RAATTY 2 cut(s) 500, 516
AcyI GRCGYC 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 12, 139
AgsI TTSAA 4 cut(s) 25, 251, 269, 379
AleI CACNNNNGTG 1 cut(s) 396
AluBI AGCT 3 cut(s) 312, 488, 552
AluI AGCT 3 cut(s) 312, 488, 552
Alw21I GWGCWC 2 cut(s) 393, 580
Alw26I GTCTC 2 cut(s) 80, 539
Alw44I GTGCAC 1 cut(s) 389
AlwI GGATC 2 cut(s) 170, 435
AoxI GGCC 2 cut(s) 81, 168
ApaLI GTGCAC 1 cut(s) 389
ApeKI GCWGC 1 cut(s) 549
ApoI RAATTY 2 cut(s) 500, 516
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 393
BanI GGYRCC 1 cut(s) 541
BbsI GAAGAC 1 cut(s) 241
Bbv12I GWGCWC 2 cut(s) 393, 580
BbvI GCAGC 1 cut(s) 561
BccI CCATC 3 cut(s) 11, 253, 402
BcoDI GTCTC 2 cut(s) 80, 539
BfaI CTAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 287
BglI GCCNNNNNGGC 1 cut(s) 176
BisI GCNGC 3 cut(s) 242, 274, 550
BlsI GCNGC 3 cut(s) 243, 275, 551
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 543
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 241
BplI GAGNNNNNCTC 4 cut(s) 60, 92, 270, 302
BpuEI CTTGAG 3 cut(s) 62, 89, 521
BsaHI GRCGYC 1 cut(s) 73
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 139
Bse1I ACTGG 1 cut(s) 164
Bse3DI GCAATG 1 cut(s) 199
BseGI GGATG 4 cut(s) 22, 60, 264, 578
BseLI CCNNNNNNNGG 2 cut(s) 12, 139
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 3 cut(s) 165, 301, 536
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 370
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 2 cut(s) 83, 170
BshNI GGYRCC 1 cut(s) 541
BsiHKAI GWGCWC 2 cut(s) 393, 580
BslI CCNNNNNNNGG 2 cut(s) 12, 139
BsmAI GTCTC 2 cut(s) 80, 539
BsmBI CGTCTC 1 cut(s) 80
BsnI GGCC 2 cut(s) 83, 170
Bsp1286I GDGCHC 2 cut(s) 393, 580
Bsp143I GATC 5 cut(s) 115, 134, 162, 359, 427
BspACI CCGC 3 cut(s) 242, 273, 276
BspANI GGCC 2 cut(s) 83, 170
BspCNI CTCAG 3 cut(s) 166, 300, 535
BspLI GGNNCC 1 cut(s) 543
BspPI GGATC 2 cut(s) 170, 435
BspT107I GGYRCC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 1 cut(s) 164
BssMI GATC 5 cut(s) 115, 134, 162, 359, 427
BssNI GRCGYC 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 95, 347
Bst6I CTCTTC 1 cut(s) 224
BstACI GRCGYC 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 4 cut(s) 174, 287, 402, 522
BstF5I GGATG 4 cut(s) 22, 60, 264, 578
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 5 cut(s) 118, 137, 165, 362, 430
BstMAI GTCTC 2 cut(s) 80, 539
BstMBI GATC 5 cut(s) 115, 134, 162, 359, 427
BstMWI GCNNNNNNNGC 2 cut(s) 176, 575
BstSLI GKGCMC 1 cut(s) 393
BstV1I GCAGC 1 cut(s) 561
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 2 cut(s) 162, 427
BstYI RGATCY 2 cut(s) 162, 427
BsuRI GGCC 2 cut(s) 83, 170
BtsCI GGATG 4 cut(s) 22, 60, 264, 578
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 82
CseI GACGC 1 cut(s) 62
CviJI RGCY 6 cut(s) 83, 170, 179, 312, 488, 552
CviKI_1 RGCY 6 cut(s) 83, 170, 179, 312, 488, 552
DdeI CTNAG 4 cut(s) 174, 287, 402, 522
DpnI GATC 5 cut(s) 117, 136, 164, 361, 429
DpnII GATC 5 cut(s) 115, 134, 162, 359, 427
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
EciI GGCGGA 1 cut(s) 291
Eco32I GATATC 1 cut(s) 367
EcoO109I RGGNCCY 1 cut(s) 82
EcoRV GATATC 1 cut(s) 367
Esp3I CGTCTC 1 cut(s) 80
FaiI YATR 7 cut(s) 206, 212, 383, 434, 481, 562, 590
Fnu4HI GCNGC 3 cut(s) 242, 274, 550
FokI GGATG 4 cut(s) 29, 67, 271, 585
Fsp4HI GCNGC 3 cut(s) 242, 274, 550
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 285
GluI GCNGC 3 cut(s) 242, 274, 550
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 2 cut(s) 83, 170
HgaI GACGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 286
Hin1I GRCGYC 1 cut(s) 73
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HinfI GANTC 2 cut(s) 102, 593
Hpy166II GTNNAC 2 cut(s) 157, 391
Hpy188I TCNGA 4 cut(s) 175, 290, 364, 421
Hpy188III TCNNGA 2 cut(s) 14, 475
Hpy8I GTNNAC 2 cut(s) 157, 391
HpyAV CCTTC 4 cut(s) 263, 329, 385, 449
HpyCH4III ACNGT 2 cut(s) 95, 347
HpyCH4V TGCA 4 cut(s) 58, 391, 529, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 575
HpyF3I CTNAG 4 cut(s) 174, 287, 402, 522
Hsp92I GRCGYC 1 cut(s) 73
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 5 cut(s) 115, 134, 162, 359, 427
LpnPI CCDG 5 cut(s) 98, 145, 230, 509, 555
Lsp1109I GCAGC 1 cut(s) 561
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 95, 508
MalI GATC 5 cut(s) 117, 136, 164, 361, 429
MboI GATC 5 cut(s) 115, 134, 162, 359, 427
MboII GAAGA 3 cut(s) 125, 241, 246
MflI RGATCY 2 cut(s) 162, 427
MhlI GDGCHC 2 cut(s) 393, 580
MluCI AATT 5 cut(s) 42, 121, 251, 500, 516
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 3 cut(s) 29, 298, 405
MseI TTAA 2 cut(s) 494, 609
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 176, 575
NdeII GATC 5 cut(s) 115, 134, 162, 359, 427
NlaIV GGNNCC 1 cut(s) 543
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 2 cut(s) 95, 508
OliI CACNNNNGTG 1 cut(s) 396
PfeI GAWTC 1 cut(s) 593
PkrI GCNGC 3 cut(s) 243, 275, 551
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 543
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 2 cut(s) 162, 427
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 2 cut(s) 494, 609
SatI GCNGC 3 cut(s) 242, 274, 550
Sau3AI GATC 5 cut(s) 115, 134, 162, 359, 427
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 96
SduI GDGCHC 2 cut(s) 393, 580
SetI ASST 6 cut(s) 314, 377, 474, 490, 528, 554
SfaNI GCATC 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 3 cut(s) 77, 104, 536
SmoI CTYRAG 3 cut(s) 77, 104, 536
Sse9I AATT 5 cut(s) 42, 121, 251, 500, 516
SsiI CCGC 3 cut(s) 242, 273, 276
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 95, 347
TasI AATT 5 cut(s) 42, 121, 251, 500, 516
TauI GCSGC 2 cut(s) 244, 276
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 2 cut(s) 494, 609
Tru9I TTAA 2 cut(s) 494, 609
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 2 cut(s) 95, 508
TseI GCWGC 1 cut(s) 549
Tsp45I GTSAC 2 cut(s) 95, 508
TspDTI ATGAA 1 cut(s) 585
TspRI CASTG 1 cut(s) 231
VneI GTGCAC 1 cut(s) 389
XapI RAATTY 2 cut(s) 500, 516
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.