Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003525

Physical Location & Seq

Genomic Coordinates Reverse (-)

26383840 .. 26386074

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G283700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCTTTGAGGCTGATTTCAACATTTTCCATCCCAAACAAGCAAGGGGATGGTGCTATGAGCAGCCTCTTGCTGTGCTCAAAGGCTGGATCTTCCTCCTCTGATCTGAGCCGTGCTTTTTCTCTAAGTTTCCGTGAGCAGAGGAAGCTCAACAAGTTTGCGGTTTCCGCGTCAACCGAGACGAAGACAGCGACGCTGACTGGGGTGGTGTTTGAGCCGTTTGAAGAGGTCAAGAGCGATGCTTTTGTTGTTCCTGTGTCCCCTCTGCTATCTCTTGCTCGTCAGCGTTACGCAGATGACTCTGAAGCTGCAATCAACGAGCAGATCAATGTGGAATACAATGTGTCTTATGTGTACCATGCCCTGTTTGCATACTTTGACAGAGACAATATTGCTCTCAAGGGCCTTGCCAAGTTTTTCAAGGAATCAAGTGAGGAAGAAAGAGAGCATGCTGAAAAGTTCATGACATATCAGAACAAACGAGGTGGAAGAGTAAAACTACACTCTATAATAGAGCCCCCTTCAGAGTTTGATCATGCAGAGAAGGGAGATGCATTGTATGCTATGGAGTTAGCATTGTCTTTGGAGAAGCTGACAAATGAAAAGCTCTTAAACTTGCATAAGGTGGCAGAGCATAACAATGATGCCCAATTGACAGATTTTGTCGAGACCGAGTTTCTGGCTGAGCAGGTTGAAGCCATAAAGAAGATAGCTGATTACGTCACTCAATTGAGGAGGGTTGGAAAAGGCCATGGAGTGTGGCACTTTGATCAAACGCTCCTTCATGAGGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

266

Amino Acids

29.79

Weight (kDa)

5.65

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01600
fragaria_vesca	FvH4_3g19901 FvH4_6g10770 FvH4_6g10770
malus_domestica	MD03G1060600.v1.1 MD04G1164500.v1.1 MD12G1178200.v1.1 MD12G1178500.v1.1
prunus_persica	Prupe.6G050900_v2.0.a1 Prupe.6G283700_v2.0.a1 Prupe.6G283700_v2.0.a1
pyrus_communis	pycom04g14680 pycom12g16850
rosa_chinensis	RchiOBHm_Chr3g0461811 RchiOBHm_Chr5g0071231
rosa_laevigata	RLG00000024896 RLG00000036193
rosa_multiflora	Rmu_co7996016.1_g000001 Rmu_sc0004308.1_g000013 Rmu_sc0005531.1_g000002 Rmu_sc0006928.1_g000027
rosa_roxburghii	Rroxscaffold_1G00009910 Rroxscaffold_6G00417900
rosa_rugosa	Rorug03G0053900 Rorug05G0410700
rosa_samantha	Rh3AG111900 Rh3BG115200 Rh3DG116900 Rh5AG466700 Rh5BG485200 Rh5CG509600 Rh5DG496500
rosa_wichuraiana	Rw3G009490 Rw5G043350 Rw5G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	679
AccII	CGCG	1 cut(s)	170
AciI	CCGC	2 cut(s)	161, 168
AclWI	GGATC	1 cut(s)	97
AcuI	CTGAAG	2 cut(s)	324, 507
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	787
AgsI	TTSAA	4 cut(s)	21, 224, 421, 695
AluBI	AGCT	6 cut(s)	148, 308, 592, 607, 713, 794
AluI	AGCT	6 cut(s)	148, 308, 592, 607, 713, 794
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	3 cut(s)	173, 378, 662
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	2 cut(s)	403, 748
ApeKI	GCWGC	2 cut(s)	63, 308
AspS9I	GGNCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	519
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	75, 295
BccI	CCATC	2 cut(s)	38, 44
BceAI	ACGGC	2 cut(s)	96, 202
BclI	TGATCA	2 cut(s)	532, 769
BcoDI	GTCTC	3 cut(s)	173, 378, 662
BfuAI	ACCTGC	1 cut(s)	679
BisI	GCNGC	2 cut(s)	64, 309
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	2 cut(s)	65, 310
BmgT120I	GGNCC	1 cut(s)	403
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	3 cut(s)	229, 541, 634
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	191
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	1 cut(s)	787
Bse1I	ACTGG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	751
BseGI	GGATG	2 cut(s)	30, 55
BseLI	CCNNNNNNNGG	1 cut(s)	787
BseMII	CTCAG	2 cut(s)	98, 675
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	2 cut(s)	88, 748
BseXI	GCAGC	2 cut(s)	75, 295
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	405, 750
BsiHKAI	GWGCWC	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	787
BsmAI	GTCTC	3 cut(s)	173, 378, 662
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	405, 750
Bso31I	GGTCTC	1 cut(s)	662
Bsp1286I	GDGCHC	2 cut(s)	80, 519
Bsp143I	GATC	5 cut(s)	89, 103, 324, 532, 769
Bsp1720I	GCTNAGC	1 cut(s)	684
Bsp19I	CCATGG	1 cut(s)	751
BspACI	CCGC	2 cut(s)	161, 168
BspANI	GGCC	2 cut(s)	405, 750
BspCNI	CTCAG	2 cut(s)	99, 676
BspFNI	CGCG	1 cut(s)	170
BspHI	TCATGA	2 cut(s)	462, 784
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	662
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	751
BssMI	GATC	5 cut(s)	89, 103, 324, 532, 769
BssT1I	CCWWGG	1 cut(s)	751
Bst6I	CTCTTC	2 cut(s)	219, 484
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	3 cut(s)	107, 125, 684
BstDSI	CCRYGG	1 cut(s)	751
BstENI	CCTNNNNNAGG	1 cut(s)	785
BstF5I	GGATG	2 cut(s)	30, 55
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	5 cut(s)	92, 106, 327, 535, 772
BstMAI	GTCTC	3 cut(s)	173, 378, 662
BstMBI	GATC	5 cut(s)	89, 103, 324, 532, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 167, 368, 560
BstNSI	RCATGY	1 cut(s)	452
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	75, 295
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	405, 750
BtgI	CCRYGG	1 cut(s)	751
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	30, 55
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	450
CciI	TCATGA	2 cut(s)	462, 784
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	2 cut(s)	159, 202
Csp6I	GTAC	1 cut(s)	355
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	6 cut(s)	359, 449, 463, 536, 752, 785
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	3 cut(s)	107, 125, 684
DpnI	GATC	5 cut(s)	91, 105, 326, 534, 771
DpnII	GATC	5 cut(s)	89, 103, 324, 532, 769
Eam1104I	CTCTTC	2 cut(s)	219, 484
EarI	CTCTTC	2 cut(s)	219, 484
Eco130I	CCWWGG	1 cut(s)	751
Eco24I	GRGCYC	1 cut(s)	519
Eco31I	GGTCTC	1 cut(s)	662
Eco57I	CTGAAG	2 cut(s)	324, 507
EcoNI	CCTNNNNNAGG	1 cut(s)	785
EcoO109I	RGGNCCY	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	751
EcoT22I	ATGCAT	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	751
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	6 cut(s)	362, 452, 466, 539, 755, 788
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	6 cut(s)	358, 448, 462, 535, 751, 784
FbaI	TGATCA	2 cut(s)	532, 769
Fnu4HI	GCNGC	2 cut(s)	64, 309
FokI	GGATG	2 cut(s)	17, 62
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	2 cut(s)	64, 309
GluI	GCNGC	2 cut(s)	64, 309
HaeIII	GGCC	2 cut(s)	405, 750
HgaI	GACGC	2 cut(s)	159, 202
Hin1II	CATG	6 cut(s)	362, 452, 466, 539, 755, 788
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	299, 425
Hpy166II	GTNNAC	2 cut(s)	174, 355
Hpy188I	TCNGA	5 cut(s)	103, 108, 304, 474, 526
Hpy188III	TCNNGA	4 cut(s)	232, 463, 667, 785
Hpy8I	GTNNAC	2 cut(s)	174, 355
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	531, 538, 791
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	5 cut(s)	311, 371, 539, 554, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 167, 368, 560
HpyF3I	CTNAG	3 cut(s)	107, 125, 684
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	6 cut(s)	362, 452, 466, 539, 755, 788
Ksp22I	TGATCA	2 cut(s)	532, 769
Kzo9I	GATC	5 cut(s)	89, 103, 324, 532, 769
LmnI	GCTCC	2 cut(s)	783, 791
LpnPI	CCDG	6 cut(s)	72, 186, 267, 377, 665, 674
Lsp1109I	GCAGC	2 cut(s)	75, 295
LweI	GCATC	3 cut(s)	229, 541, 634
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	2 cut(s)	287, 721
MalI	GATC	5 cut(s)	91, 105, 326, 534, 771
MboI	GATC	5 cut(s)	89, 103, 324, 532, 769
MboII	GAAGA	6 cut(s)	84, 196, 236, 449, 501, 718
MfeI	CAATTG	2 cut(s)	650, 728
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	2 cut(s)	80, 519
MluCI	AATT	2 cut(s)	650, 728
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	721
Mph1103I	ATGCAT	1 cut(s)	556
MseI	TTAA	2 cut(s)	611, 796
MslI	CAYNNNNRTG	1 cut(s)	639
MunI	CAATTG	2 cut(s)	650, 728
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	4 cut(s)	145, 167, 368, 560
NcoI	CCATGG	1 cut(s)	751
NdeII	GATC	5 cut(s)	89, 103, 324, 532, 769
NlaIII	CATG	6 cut(s)	362, 452, 466, 539, 755, 788
NmuCI	GTSAC	1 cut(s)	721
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	1 cut(s)	452
PaeI	GCATGC	1 cut(s)	452
PagI	TCATGA	2 cut(s)	462, 784
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	65, 310
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	611, 796
SatI	GCNGC	2 cut(s)	64, 309
Sau3AI	GATC	5 cut(s)	89, 103, 324, 532, 769
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	293
SduI	GDGCHC	2 cut(s)	80, 519
SfaNI	GCATC	3 cut(s)	229, 541, 634
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	2 cut(s)	650, 728
SsiI	CCGC	2 cut(s)	161, 168
SspI	AATATT	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	751
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	1 cut(s)	666
TaqII	GACCGA	1 cut(s)	686
TasI	AATT	2 cut(s)	650, 728
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	611, 796
Tru9I	TTAA	2 cut(s)	611, 796
TseFI	GTSAC	1 cut(s)	721
TseI	GCWGC	2 cut(s)	63, 308
Tsp45I	GTSAC	1 cut(s)	721
TspDTI	ATGAA	3 cut(s)	451, 615, 773
TspGWI	ACGGA	1 cut(s)	122
XagI	CCTNNNNNAGG	1 cut(s)	785
XceI	RCATGY	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.