Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006928.1

Orthogroup ID

OG0003525

Physical Location & Seq

Genomic Coordinates Forward (+)

97776 .. 99669

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006928.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgcctttgactataagcccttcttcaacatccataatctcccaaagaccaaaccttggtttcttcaaaaacactggaccagctttcattaaactcccaaagagcaacaacaatggcaacgtgggtagtggtggtttggtaatattcgcctcaaatggggctaataatcgacaagcactggaggtggtgttcgagccctttgaggaggtcaagaaggagctccttctcgtcccaactgagcctaatgcttctcttgctcgccagaaatacacagacgaaagtgtagctgccattaatgaacaaatcaatgtggaatacaatgtctcctatgtgtaccatgccatctatgcctactttgacagagacaatgttgctcttaagggatttgccaagtttttcaaagaatcaagcgcagaagaaagggggcatgctgaaaaactgatggaatatcagattttgatatataactatgttctcctgatgaccatataccagaacaaacgtggaggaagagttaagctacagtccatgctaatgccctgctcagagtttgatcatgctgagaagggtgatgcgttgcacgcaatggagcttgcgcttgctttggaaaagctgaacaatgagaaacttctaaatctgcacaaaatagctaatgaaaacaatgatgtgcatttagcggattacattgaaagtgaatacttgaatgaacaggtcgaatctataaggaaaatttctgaatatgtagctcagttgagaaggattggtccaggacatggtgtttggcactttgatcagatgctccttaatgacacagccggggtcgccgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

276

Amino Acids

31.05

Weight (kDa)

5.67

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01600
fragaria_vesca	FvH4_3g19901 FvH4_6g10770 FvH4_6g10770
malus_domestica	MD03G1060600.v1.1 MD04G1164500.v1.1 MD12G1178200.v1.1 MD12G1178500.v1.1
prunus_persica	Prupe.6G050900_v2.0.a1 Prupe.6G283700_v2.0.a1 Prupe.6G283700_v2.0.a1
pyrus_communis	pycom04g14680 pycom12g16850
rosa_chinensis	RchiOBHm_Chr3g0461811 RchiOBHm_Chr5g0071231
rosa_laevigata	RLG00000024896 RLG00000036193
rosa_multiflora	Rmu_co7996016.1_g000001 Rmu_sc0004308.1_g000013 Rmu_sc0005531.1_g000002 Rmu_sc0006928.1_g000027
rosa_roxburghii	Rroxscaffold_1G00009910 Rroxscaffold_6G00417900
rosa_rugosa	Rorug03G0053900 Rorug05G0410700
rosa_samantha	Rh3AG111900 Rh3BG115200 Rh3DG116900 Rh5AG466700 Rh5BG485200 Rh5CG509600 Rh5DG496500
rosa_wichuraiana	Rw3G009490 Rw5G043350 Rw5G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	56, 773
AciI	CCGC	2 cut(s)	677, 825
AcsI	RAATTY	1 cut(s)	729
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	56, 156, 773
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	5 cut(s)	27, 67, 400, 689, 703
AjnI	CCWGG	1 cut(s)	766
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	8 cut(s)	83, 220, 287, 520, 592, 613, 650, 746
AluI	AGCT	8 cut(s)	83, 220, 287, 520, 592, 613, 650, 746
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	2 cut(s)	328, 357
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	729
ArsI	GACNNNNNNTTYG	2 cut(s)	762, 794
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	2 cut(s)	413, 598
AspS9I	GGNCC	2 cut(s)	77, 764
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	1 cut(s)	581
AvaII	GGWCC	2 cut(s)	77, 764
BanII	GRGCYC	2 cut(s)	198, 222
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	2 cut(s)	350, 436
BciT130I	CCWGG	1 cut(s)	768
BclI	TGATCA	2 cut(s)	553, 790
BcnI	CCSGG	1 cut(s)	817
BcoDI	GTCTC	2 cut(s)	328, 357
BfmI	CTRYAG	1 cut(s)	521
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	2 cut(s)	288, 825
BlsI	GCNGC	2 cut(s)	289, 826
Bme1390I	CCNGG	2 cut(s)	768, 817
Bme18I	GGWCC	2 cut(s)	77, 764
BmgT120I	GGNCC	2 cut(s)	77, 764
BmrFI	CCNGG	2 cut(s)	768, 817
BmsI	GCATC	2 cut(s)	562, 786
BpmI	CTGGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	817
BsaJI	CCNNGG	2 cut(s)	55, 816
BsaXI	ACNNNNNCTCC	6 cut(s)	173, 203, 308, 338, 498, 528
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 156, 773
Bse1I	ACTGG	2 cut(s)	79, 183
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	2 cut(s)	55, 816
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	3 cut(s)	56, 156, 773
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	4 cut(s)	228, 552, 558, 761
BseNI	ACTGG	2 cut(s)	79, 183
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	623
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	816
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	56, 156, 773
BsmAI	GTCTC	2 cut(s)	328, 357
BsmFI	GGGAC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	198, 222
Bsp143I	GATC	2 cut(s)	553, 790
BspACI	CCGC	2 cut(s)	677, 825
BspCNI	CTCAG	4 cut(s)	229, 553, 557, 760
BspTI	CTTAAG	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	79, 183
BssECI	CCNNGG	2 cut(s)	55, 816
BssMI	GATC	2 cut(s)	553, 790
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	1 cut(s)	525
Bst6I	CTCTTC	1 cut(s)	505
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	5 cut(s)	259, 429, 582, 594, 600
BstDEI	CTNAG	4 cut(s)	237, 544, 561, 747
BstF5I	GGATG	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	413, 598
BstKTI	GATC	2 cut(s)	556, 793
BstMAI	GTCTC	2 cut(s)	328, 357
BstMBI	GATC	2 cut(s)	553, 790
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 347, 581, 821
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	766, 815
BstSFI	CTRYAG	1 cut(s)	521
BstV1I	GCAGC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	72, 176
Cac8I	GCNNGC	5 cut(s)	259, 429, 582, 594, 600
CfoI	GCGC	2 cut(s)	413, 598
Cfr13I	GGNCC	2 cut(s)	77, 764
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	6 cut(s)	338, 428, 529, 557, 773, 828
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	4 cut(s)	237, 544, 561, 747
DpnI	GATC	2 cut(s)	555, 792
DpnII	GATC	2 cut(s)	553, 790
Eam1104I	CTCTTC	1 cut(s)	505
EarI	CTCTTC	1 cut(s)	505
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	198, 222
Eco47I	GGWCC	2 cut(s)	77, 764
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	198, 222
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	6 cut(s)	341, 431, 532, 560, 776, 831
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	6 cut(s)	337, 427, 528, 556, 772, 827
FbaI	TGATCA	2 cut(s)	553, 790
Fnu4HI	GCNGC	2 cut(s)	288, 825
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	2 cut(s)	198, 222
Fsp4HI	GCNGC	2 cut(s)	288, 825
GlaI	GCGC	2 cut(s)	412, 597
GluI	GCNGC	2 cut(s)	288, 825
GsuI	CTGGAG	1 cut(s)	200
HapII	CCGG	1 cut(s)	816
HhaI	GCGC	2 cut(s)	413, 598
Hin1II	CATG	6 cut(s)	341, 431, 532, 560, 776, 831
Hin6I	GCGC	2 cut(s)	411, 596
HinP1I	GCGC	2 cut(s)	411, 596
HinfI	GANTC	2 cut(s)	404, 716
HpaII	CCGG	1 cut(s)	816
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	453, 547, 736, 795
Hpy188III	TCNNGA	2 cut(s)	211, 478
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	5 cut(s)	30, 208, 233, 559, 750
HpyCH4III	ACNGT	1 cut(s)	525
HpyCH4IV	ACGT	2 cut(s)	120, 502
HpyCH4V	TGCA	3 cut(s)	580, 640, 670
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 347, 581, 821
HpyF3I	CTNAG	4 cut(s)	237, 544, 561, 747
HpySE526I	ACGT	2 cut(s)	120, 502
Hsp92II	CATG	6 cut(s)	341, 431, 532, 560, 776, 831
HspAI	GCGC	2 cut(s)	411, 596
Ksp22I	TGATCA	2 cut(s)	553, 790
Kzo9I	GATC	2 cut(s)	553, 790
LmnI	GCTCC	4 cut(s)	217, 225, 589, 804
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	2 cut(s)	562, 786
MaeII	ACGT	2 cut(s)	120, 502
MalI	GATC	2 cut(s)	555, 792
MboI	GATC	2 cut(s)	553, 790
MboII	GAAGA	4 cut(s)	15, 55, 428, 522
MhlI	GDGCHC	2 cut(s)	198, 222
MluCI	AATT	1 cut(s)	729
MnlI	CCTC	5 cut(s)	160, 175, 196, 199, 500
MseI	TTAA	5 cut(s)	90, 294, 378, 516, 804
MslI	CAYNNNNRTG	1 cut(s)	533
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	1 cut(s)	816
MspR9I	CCNGG	2 cut(s)	768, 817
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	4 cut(s)	254, 347, 581, 821
NciI	CCSGG	1 cut(s)	817
NdeII	GATC	2 cut(s)	553, 790
NlaIII	CATG	6 cut(s)	341, 431, 532, 560, 776, 831
NspI	RCATGY	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	404, 716
PflMI	CCANNNNNTGG	2 cut(s)	56, 773
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	2 cut(s)	289, 826
PshBI	ATTAAT	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspPI	GGNCC	2 cut(s)	77, 764
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	5 cut(s)	90, 294, 378, 516, 804
SatI	GCNGC	2 cut(s)	288, 825
Sau3AI	GATC	2 cut(s)	553, 790
Sau96I	GGNCC	2 cut(s)	77, 764
ScrFI	CCNGG	2 cut(s)	768, 817
SduI	GDGCHC	2 cut(s)	198, 222
SfaNI	GCATC	2 cut(s)	562, 786
SfcI	CTRYAG	1 cut(s)	521
SinI	GGWCC	2 cut(s)	77, 764
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	1 cut(s)	729
SsiI	CCGC	2 cut(s)	677, 825
SspI	AATATT	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	766, 815
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	525
TaiI	ACGT	2 cut(s)	123, 505
TaqI	TCGA	3 cut(s)	169, 192, 714
TasI	AATT	1 cut(s)	729
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	2 cut(s)	404, 716
Tru1I	TTAA	5 cut(s)	90, 294, 378, 516, 804
Tru9I	TTAA	5 cut(s)	90, 294, 378, 516, 804
TscAI	CASTG	2 cut(s)	79, 183
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	76, 312, 669, 720
TspRI	CASTG	2 cut(s)	79, 183
Van91I	CCANNNNNTGG	2 cut(s)	56, 773
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	77, 764
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	1 cut(s)	729
XceI	RCATGY	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.