Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003525

Physical Location & Seq

Genomic Coordinates Reverse (-)

17507467 .. 17509891

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14680.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAAGGGCAACGCCTCTCACATTTCTTCACCATTCTCCAATTCCTCTGCAATTTTCAGTCCAAATTCTTGCTCAAAATCTCTGATTTCGAATCACCGGTTGGAGATACTCCGTTCGGAAATCGTATCGACGATGTCTCTGAGGTCCGTTTCTGCATTTTCGGTCCCATCCAAGCAACGGGACAATGGTGGTGCTGTTAGCACCCTCTTGTTCAGCTCAAAACTTGGATCACCCTCCTCCGCTCTGAACTTCAAGCCGCAGCGAAAAATCGAAAAGTTTTCGGTTTCTGCATCGAGCGGTGCAGTGGCGATGACCGGAGTGGTGTTTCAGCCGTTTGAGGAGGTGAAGAACGATGCTTTTGTTGTCCCTGTGGCTCCTCATGTCTCTCTTGCCCGTCAGCGTTATGCAAACGAGCCCGAAGCCGCCATAAACGAGCAGATCAATGTGGAGTACAATGTGTCGTATGTGTACCATGCACTGTTTGCGTACTTTGACAGGGACAATGTTGCTCTCAAGGGCCTTGCCAAGTTTTTCAAGGAATCGAGCGAGGAAGAAAGAGGACATGCCGAAAAGCTGATGGAATATCAGAATATGCGAGGTGGGAGAGTGACACTGCACTCCATAGTAGCGCCGCCTACGGAGTTTGATCATGTAGAAAAGGGAGATGCATTGTATGCTATGGAGTTAGCATTGTCTTTGGAGAAGCTGACAAATGAAAAACTCTTGAACTTGCATAAGGTGGTTGCAGACGAGAACAATGATGCCCAATTGACAGATTTTATCGAGAGCGAGTTTTTGGCTGAGCAGGTTGAAGCCATTAAGAAGATAGCTGACTATGTCACTCAGCTGAGAATGGTTGGAAAAGGCCATGGAGTGTGGCACTTTGACCAACAGCTCCTTCATGAGGGTGATGCTGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000041 GO:0000302 GO:0003006 GO:0003674 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009791 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0015979 GO:0016020 GO:0019725 GO:0019904 GO:0022414 GO:0030001 GO:0030003 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042221 GO:0042493 GO:0042542 GO:0042592 GO:0042651 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046872 GO:0046914 GO:0046916 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051704 GO:0051707 GO:0055035 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061458 GO:0065007 GO:0065008 GO:0090567 GO:0097577 GO:0098771 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04216 ko04217 ko04978 map04216 map04217 map04978

Pfam Domains

Protein Families

Ferritin

Protein Analysis

308

Amino Acids

33.96

Weight (kDa)

5.9

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01600
fragaria_vesca	FvH4_3g19901 FvH4_6g10770 FvH4_6g10770
malus_domestica	MD03G1060600.v1.1 MD04G1164500.v1.1 MD12G1178200.v1.1 MD12G1178500.v1.1
prunus_persica	Prupe.6G050900_v2.0.a1 Prupe.6G283700_v2.0.a1 Prupe.6G283700_v2.0.a1
pyrus_communis	pycom04g14680 pycom12g16850
rosa_chinensis	RchiOBHm_Chr3g0461811 RchiOBHm_Chr5g0071231
rosa_laevigata	RLG00000024896 RLG00000036193
rosa_multiflora	Rmu_co7996016.1_g000001 Rmu_sc0004308.1_g000013 Rmu_sc0005531.1_g000002 Rmu_sc0006928.1_g000027
rosa_roxburghii	Rroxscaffold_1G00009910 Rroxscaffold_6G00417900
rosa_rugosa	Rorug03G0053900 Rorug05G0410700
rosa_samantha	Rh3AG111900 Rh3BG115200 Rh3DG116900 Rh5AG466700 Rh5BG485200 Rh5CG509600 Rh5DG496500
rosa_wichuraiana	Rw3G009490 Rw5G043350 Rw5G043380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	796
AccBSI	CCGCTC	2 cut(s)	242, 297
AciI	CCGC	5 cut(s)	240, 257, 297, 423, 632
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	64
AfaI	GTAC	3 cut(s)	452, 470, 488
AfiI	CCNNNNNNNGG	2 cut(s)	177, 904
AgeI	ACCGGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	253, 535, 727, 812
AjuI	GAANNNNNNNTTGG	4 cut(s)	83, 115, 882, 914
AluBI	AGCT	6 cut(s)	216, 574, 706, 830, 847, 895
AluI	AGCT	6 cut(s)	216, 574, 706, 830, 847, 895
Alw26I	GTCTC	2 cut(s)	141, 388
AlwI	GGATC	1 cut(s)	235
AoxI	GGCC	2 cut(s)	517, 865
ApeKI	GCWGC	2 cut(s)	259, 914
ApoI	RAATTY	1 cut(s)	64
AsiGI	ACCGGT	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	3 cut(s)	144, 163, 517
AsuHPI	GGTGA	5 cut(s)	21, 86, 222, 355, 920
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	144, 163
BanII	GRGCYC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	271, 901
BccI	CCATC	2 cut(s)	175, 571
BceAI	ACGGC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	646
BcoDI	GTCTC	2 cut(s)	141, 388
BfoI	RGCGCY	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	796
BisI	GCNGC	5 cut(s)	257, 260, 423, 632, 915
BlpI	GCTNAGC	1 cut(s)	801
BlsI	GCNGC	5 cut(s)	258, 261, 424, 633, 916
Bme18I	GGWCC	2 cut(s)	144, 163
BmgT120I	GGNCC	3 cut(s)	144, 163, 517
BmiI	GGNNCC	2 cut(s)	165, 375
BmsI	GCATC	5 cut(s)	299, 343, 655, 751, 901
Bpu1102I	GCTNAGC	1 cut(s)	801
Bpu14I	TTCGAA	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	868
BsaWI	WCCGGW	2 cut(s)	96, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 904
Bse118I	RCCGGY	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	868
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	177, 904
BseMII	CTCAG	4 cut(s)	131, 792, 839, 857
BseRI	GAGGAG	3 cut(s)	226, 353, 366
BseXI	GCAGC	2 cut(s)	271, 901
BsgI	GTGCAG	2 cut(s)	321, 599
BshFI	GGCC	2 cut(s)	519, 867
BshTI	ACCGGT	1 cut(s)	96
BsiSI	CCGG	2 cut(s)	97, 315
BslFI	GGGAC	4 cut(s)	149, 194, 350, 512
BslI	CCNNNNNNNGG	2 cut(s)	177, 904
BsmAI	GTCTC	2 cut(s)	141, 388
BsmFI	GGGAC	4 cut(s)	149, 194, 350, 512
BsnI	GGCC	2 cut(s)	519, 867
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	3 cut(s)	227, 438, 646
Bsp1720I	GCTNAGC	1 cut(s)	801
Bsp19I	CCATGG	1 cut(s)	868
BspACI	CCGC	5 cut(s)	240, 257, 297, 423, 632
BspANI	GGCC	2 cut(s)	519, 867
BspCNI	CTCAG	4 cut(s)	132, 793, 840, 856
BspHI	TCATGA	1 cut(s)	901
BspLI	GGNNCC	2 cut(s)	165, 375
BspMI	ACCTGC	1 cut(s)	796
BspPI	GGATC	1 cut(s)	235
BspT104I	TTCGAA	1 cut(s)	89
BsrBI	CCGCTC	2 cut(s)	242, 297
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	868
BssMI	GATC	3 cut(s)	227, 438, 646
BssT1I	CCWWGG	1 cut(s)	868
Bst4CI	ACNGT	1 cut(s)	480
BstAPI	GCANNNNNTGC	2 cut(s)	482, 674
BstBI	TTCGAA	1 cut(s)	89
BstDEI	CTNAG	4 cut(s)	140, 801, 843, 848
BstDSI	CCRYGG	1 cut(s)	868
BstENI	CCTNNNNNAGG	1 cut(s)	902
BstF5I	GGATG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	632
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	3 cut(s)	230, 441, 649
BstMAI	GTCTC	2 cut(s)	141, 388
BstMBI	GATC	3 cut(s)	227, 438, 646
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 674
BstNSI	RCATGY	1 cut(s)	566
BstV1I	GCAGC	2 cut(s)	271, 901
BsuRI	GGCC	2 cut(s)	519, 867
BtgI	CCRYGG	1 cut(s)	868
BtgZI	GCGATG	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	167
BtsI	GCAGTG	2 cut(s)	309, 611
BtsIMutI	CAGTG	3 cut(s)	309, 476, 611
BveI	ACCTGC	1 cut(s)	796
CciI	TCATGA	1 cut(s)	901
CfoI	GCGC	1 cut(s)	631
Cfr10I	RCCGGY	1 cut(s)	96
Cfr13I	GGNCC	3 cut(s)	144, 163, 517
Csp6I	GTAC	3 cut(s)	451, 469, 487
CspAI	ACCGGT	1 cut(s)	96
CviAII	CATG	6 cut(s)	380, 473, 563, 650, 869, 902
CviQI	GTAC	3 cut(s)	451, 469, 487
DdeI	CTNAG	4 cut(s)	140, 801, 843, 848
DpnI	GATC	3 cut(s)	229, 440, 648
DpnII	GATC	3 cut(s)	227, 438, 646
Eco130I	CCWWGG	1 cut(s)	868
Eco24I	GRGCYC	1 cut(s)	417
Eco47I	GGWCC	2 cut(s)	144, 163
EcoNI	CCTNNNNNAGG	1 cut(s)	902
EcoO109I	RGGNCCY	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	868
EcoT22I	ATGCAT	1 cut(s)	670
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	868
FaeI	CATG	6 cut(s)	383, 476, 566, 653, 872, 905
FaqI	GGGAC	4 cut(s)	149, 194, 350, 512
FatI	CATG	6 cut(s)	379, 472, 562, 649, 868, 901
FbaI	TGATCA	1 cut(s)	646
Fnu4HI	GCNGC	5 cut(s)	257, 260, 423, 632, 915
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	5 cut(s)	257, 260, 423, 632, 915
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	5 cut(s)	257, 260, 423, 632, 915
HaeII	RGCGCY	1 cut(s)	632
HaeIII	GGCC	2 cut(s)	519, 867
HapII	CCGG	2 cut(s)	97, 315
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	6 cut(s)	383, 476, 566, 653, 872, 905
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HinfI	GANTC	2 cut(s)	91, 539
HpaII	CCGG	2 cut(s)	97, 315
HphI	GGTGA	5 cut(s)	21, 86, 222, 355, 920
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	5 cut(s)	84, 118, 141, 246, 588
Hpy188III	TCNNGA	3 cut(s)	724, 784, 902
Hpy8I	GTNNAC	1 cut(s)	469
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	908
HpyCH4III	ACNGT	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 674
HpyF3I	CTNAG	4 cut(s)	140, 801, 843, 848
Hsp92II	CATG	6 cut(s)	383, 476, 566, 653, 872, 905
HspAI	GCGC	1 cut(s)	629
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	3 cut(s)	227, 438, 646
LmnI	GCTCC	2 cut(s)	379, 900
LpnPI	CCDG	5 cut(s)	110, 328, 381, 481, 791
Lsp1109I	GCAGC	2 cut(s)	271, 901
LweI	GCATC	5 cut(s)	299, 343, 655, 751, 901
MaeIII	GTNAC	2 cut(s)	607, 838
MalI	GATC	3 cut(s)	229, 440, 648
MbiI	CCGCTC	2 cut(s)	242, 297
MboI	GATC	3 cut(s)	227, 438, 646
MboII	GAAGA	4 cut(s)	18, 358, 563, 835
MfeI	CAATTG	1 cut(s)	767
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	5 cut(s)	40, 51, 64, 767, 919
MmeI	TCCRAC	2 cut(s)	81, 838
Mph1103I	ATGCAT	1 cut(s)	670
MseI	TTAA	2 cut(s)	819, 922
MslI	CAYNNNNRTG	1 cut(s)	906
MspA1I	CMGCKG	1 cut(s)	847
MspI	CCGG	2 cut(s)	97, 315
MunI	CAATTG	1 cut(s)	767
MwoI	GCNNNNNNNGC	2 cut(s)	482, 674
NcoI	CCATGG	1 cut(s)	868
NdeII	GATC	3 cut(s)	227, 438, 646
NlaIII	CATG	6 cut(s)	383, 476, 566, 653, 872, 905
NlaIV	GGNNCC	2 cut(s)	165, 375
NmuCI	GTSAC	2 cut(s)	607, 838
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	1 cut(s)	566
NspV	TTCGAA	1 cut(s)	89
PagI	TCATGA	1 cut(s)	901
PfeI	GAWTC	2 cut(s)	91, 539
PflFI	GACNNNGTC	2 cut(s)	133, 836
PinAI	ACCGGT	1 cut(s)	96
PkrI	GCNGC	5 cut(s)	258, 261, 424, 633, 916
PspN4I	GGNNCC	2 cut(s)	165, 375
PspPI	GGNCC	3 cut(s)	144, 163, 517
PsyI	GACNNNGTC	2 cut(s)	133, 836
PvuII	CAGCTG	1 cut(s)	847
RsaI	GTAC	3 cut(s)	452, 470, 488
RsaNI	GTAC	3 cut(s)	451, 469, 487
RseI	CAYNNNNRTG	1 cut(s)	906
SaqAI	TTAA	2 cut(s)	819, 922
SatI	GCNGC	5 cut(s)	257, 260, 423, 632, 915
Sau3AI	GATC	3 cut(s)	227, 438, 646
Sau96I	GGNCC	3 cut(s)	144, 163, 517
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	5 cut(s)	299, 343, 655, 751, 901
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	2 cut(s)	144, 163
SmiMI	CAYNNNNRTG	1 cut(s)	906
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	5 cut(s)	40, 51, 64, 767, 919
SsiI	CCGC	5 cut(s)	240, 257, 297, 423, 632
StyI	CCWWGG	1 cut(s)	868
TaaI	ACNGT	1 cut(s)	480
TaqI	TCGA	6 cut(s)	89, 128, 270, 293, 542, 783
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	5 cut(s)	40, 51, 64, 767, 919
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	3 cut(s)	259, 425, 634
TfiI	GAWTC	2 cut(s)	91, 539
Tru1I	TTAA	2 cut(s)	819, 922
Tru9I	TTAA	2 cut(s)	819, 922
TscAI	CASTG	3 cut(s)	309, 483, 618
TseFI	GTSAC	2 cut(s)	607, 838
TseI	GCWGC	2 cut(s)	259, 914
Tsp45I	GTSAC	2 cut(s)	607, 838
TspDTI	ATGAA	3 cut(s)	17, 729, 890
TspGWI	ACGGA	3 cut(s)	101, 136, 653
TspRI	CASTG	3 cut(s)	309, 483, 618
Tth111I	GACNNNGTC	2 cut(s)	133, 836
VpaK11BI	GGWCC	2 cut(s)	144, 163
XagI	CCTNNNNNAGG	1 cut(s)	902
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	566
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.