pycom12g17440
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0022544
Physical Location & Seq
Reverse (-)
19807552 .. 19808184
633 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g17440.1

Sequence Viewer

Length: 633 bp
ATGAAAACTGAACTCCAAGGGTTTGAATTTGTTTCTGTGTATCTGCAAAAGATCAAGGATGCAAGGGATTATCACGCAGCTGCAGGTGTTCATTTTGATGATGATGATATAATCATTCTTGCCTTGAAAGGTCTTCTTACAGAATTCAATACCTTTAGATGTATCATAAGAGGAAGAGAGAATAGTATTTCACTAAAGGATTTCAGGTCTCAGTTGTTGGCAGAAGAGACTATAATTGGTCAATATTTTGAGTCTTCAACATCTTTTGGTTCTGCGATGGTGGCTGGTACTGCAATCAACAAAGGGAAAGCTTTAGTTCTTGATCAAAATTCCTCGCATTCTGTTGAAATTGGTTCAAGCTTTGGAATCAATGACCAAAACTATAAGAGTAATGGTAATGAGTTACCTTCTAGTCAAACTTTTGGGGGTCATTACAACACTAATGGCAGTCAATTTCACAACAATGGTGGTCATTATCAAGGCTTCTCAAGTTCTGGAGGTTACAAGGGAAATAACTCAGAGGCAAAGGAAGAGGTAGATCATATTACTCTGGACCAAGGCCTTATAATCCTCCACCAAATGCAAGTCCTGGAATTCTTTGTGCTCCAAGACCATTTCAAGCTTATTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs rve

Protein Analysis

211

Amino Acids

23.27

Weight (kDa)

5.39

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022544)

Species Orthologous Gene IDs
pyrus_communis pycom07g00390 pycom07g24750 pycom08g04260 pycom12g17440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 566
AarI CACCTGC 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 74
AcsI RAATTY 4 cut(s) 26, 143, 328, 593
AfaI GTAC 1 cut(s) 289
AgsI TTSAA 7 cut(s) 26, 127, 148, 258, 347, 357, 619
AjnI CCWGG 1 cut(s) 588
AluBI AGCT 4 cut(s) 80, 311, 360, 622
AluI AGCT 4 cut(s) 80, 311, 360, 622
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 2 cut(s) 213, 221
AoxI GGCC 1 cut(s) 559
ApeKI GCWGC 2 cut(s) 77, 80
ApoI RAATTY 4 cut(s) 26, 143, 328, 593
AspS9I GGNCC 1 cut(s) 553
AvaII GGWCC 1 cut(s) 553
BbsI GAAGAC 2 cut(s) 125, 246
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 67, 89
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 590
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 213, 221
BfaI CTAG 2 cut(s) 411, 631
BfmI CTRYAG 1 cut(s) 81
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 2 cut(s) 78, 81
BlsI GCNGC 2 cut(s) 79, 82
Bme1390I CCNGG 1 cut(s) 590
Bme18I GGWCC 1 cut(s) 553
BmgT120I GGNCC 1 cut(s) 553
BmrFI CCNGG 1 cut(s) 590
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 2 cut(s) 125, 246
BpmI CTGGAG 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 472
BsaI GGTCTC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 16, 556
BseBI CCWGG 1 cut(s) 590
BseDI CCNNGG 2 cut(s) 16, 556
BseGI GGATG 1 cut(s) 64
BseMII CTCAG 2 cut(s) 224, 531
BseXI GCAGC 2 cut(s) 67, 89
BshFI GGCC 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 606
BsmAI GTCTC 2 cut(s) 213, 221
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 1 cut(s) 561
Bso31I GGTCTC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 606
Bsp143I GATC 3 cut(s) 51, 322, 538
BspANI GGCC 1 cut(s) 561
BspCNI CTCAG 2 cut(s) 223, 530
BspMAI CTGCAG 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 16, 556
BssMI GATC 3 cut(s) 51, 322, 538
BssT1I CCWWGG 2 cut(s) 16, 556
Bst2UI CCWGG 1 cut(s) 590
Bst6I CTCTTC 3 cut(s) 169, 219, 525
BstDEI CTNAG 2 cut(s) 210, 517
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 3 cut(s) 54, 325, 541
BstMAI GTCTC 2 cut(s) 213, 221
BstMBI GATC 3 cut(s) 51, 322, 538
BstMWI GCNNNNNNNGC 2 cut(s) 281, 290
BstNI CCWGG 1 cut(s) 590
BstSCI CCNGG 1 cut(s) 588
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 67, 89
BstV2I GAAGAC 2 cut(s) 125, 246
BsuRI GGCC 1 cut(s) 561
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 553
Csp6I GTAC 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviJI RGCY 7 cut(s) 80, 284, 311, 360, 483, 561, 622
CviKI_1 RGCY 7 cut(s) 80, 284, 311, 360, 483, 561, 622
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 2 cut(s) 210, 517
DpnI GATC 3 cut(s) 53, 324, 540
DpnII GATC 3 cut(s) 51, 322, 538
Eam1104I CTCTTC 3 cut(s) 169, 219, 525
EarI CTCTTC 3 cut(s) 169, 219, 525
Eco130I CCWWGG 2 cut(s) 16, 556
Eco147I AGGCCT 1 cut(s) 561
Eco31I GGTCTC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 553
EcoRI GAATTC 2 cut(s) 143, 593
EcoRII CCWGG 1 cut(s) 588
EcoT14I CCWWGG 2 cut(s) 16, 556
ErhI CCWWGG 2 cut(s) 16, 556
FaiI YATR 6 cut(s) 110, 167, 233, 384, 543, 566
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 2 cut(s) 78, 81
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 78, 81
FspBI CTAG 2 cut(s) 411, 631
GluI GCNGC 2 cut(s) 78, 81
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 561
HindIII AAGCTT 3 cut(s) 309, 358, 620
HinfI GANTC 2 cut(s) 251, 366
Hpy188I TCNGA 1 cut(s) 520
Hpy188III TCNNGA 3 cut(s) 320, 495, 551
HpyAV CCTTC 1 cut(s) 417
HpyCH4V TGCA 5 cut(s) 46, 62, 83, 293, 583
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 290
HpyF3I CTNAG 2 cut(s) 210, 517
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 3 cut(s) 51, 322, 538
LmnI GCTCC 1 cut(s) 609
LpnPI CCDG 7 cut(s) 69, 190, 270, 480, 536, 575, 602
Lsp1109I GCAGC 2 cut(s) 67, 89
LweI GCATC 1 cut(s) 49
MaeI CTAG 2 cut(s) 411, 631
MaeIII GTNAC 2 cut(s) 402, 500
MalI GATC 3 cut(s) 53, 324, 540
MboI GATC 3 cut(s) 51, 322, 538
MboII GAAGA 5 cut(s) 125, 186, 236, 246, 542
MhlI GDGCHC 1 cut(s) 606
MluCI AATT 7 cut(s) 26, 143, 234, 328, 348, 452, 593
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 6 cut(s) 164, 343, 491, 514, 526, 581
MslI CAYNNNNRTG 2 cut(s) 96, 462
MspA1I CMGCKG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 590
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 1 cut(s) 590
MwoI GCNNNNNNNGC 2 cut(s) 281, 290
NdeII GATC 3 cut(s) 51, 322, 538
PaqCI CACCTGC 1 cut(s) 74
PceI AGGCCT 1 cut(s) 561
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 588
PkrI GCNGC 2 cut(s) 79, 82
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PsiI TTATAA 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 588
PspGI CCWGG 1 cut(s) 588
PspPI GGNCC 1 cut(s) 553
PstI CTGCAG 1 cut(s) 85
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
RseI CAYNNNNRTG 2 cut(s) 96, 462
SatI GCNGC 2 cut(s) 78, 81
Sau3AI GATC 3 cut(s) 51, 322, 538
Sau96I GGNCC 1 cut(s) 553
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 1 cut(s) 606
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 81
SinI GGWCC 1 cut(s) 553
SmiMI CAYNNNNRTG 2 cut(s) 96, 462
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
Sse9I AATT 7 cut(s) 26, 143, 234, 328, 348, 452, 593
SseBI AGGCCT 1 cut(s) 561
SspI AATATT 1 cut(s) 245
SspMI CTAG 2 cut(s) 411, 631
StuI AGGCCT 1 cut(s) 561
StyD4I CCNGG 1 cut(s) 588
StyI CCWWGG 2 cut(s) 16, 556
TasI AATT 7 cut(s) 26, 143, 234, 328, 348, 452, 593
TfiI GAWTC 1 cut(s) 366
TseI GCWGC 2 cut(s) 77, 80
TspDTI ATGAA 2 cut(s) 17, 80
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 4 cut(s) 26, 143, 328, 593
XspI CTAG 2 cut(s) 411, 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.