Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009014

Physical Location & Seq

Genomic Coordinates Reverse (-)

19817702 .. 19819734

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17460.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAACAAGAACAACAGCCGGATCGGAAGCAGGTCTGCCAATGGAGGCAGGCCACAATCACCTGCTTACATTGAAACAGATCCATCTGGTCGCTATGGACGTTTCAGGGAAATGCTTGGCAAAGGAGCCATGAAGACAGTTTACAAGGCATTTGATGAGGTCCTCGCAATGGAGGTGGCTTGGAATCAAGTCAAGCTTAATGATGTCTTTAGTTCACCGGACGAACTTCAGCGCCTATACTACGAGGTCCACCTCCTCAAGAACCTCAATCATGACTCCATCATCCAATACTACACATCTTGGATCGATGTTAATCGCCGCACCTTCAACTTCATCACCGAAATGTTCACCTCCGGCACTCTCAGAGAGTACAGACAGAATTACCAGCGAGTGAATATTGGAGCAGTGAAAAATTGGTCCCGACAGATCTTGCGTGGTCTGGCTTATTTGCACAAACTTGATCCACCTGTGATTCACAGAGACCTCAAGTGTGACAACATCTTTGTTAATGGCCACCTAGGGCAAGTCAAGATTGGTGATTTGGGCTTGGCTGCTATTCTTCGTGGTACGAAACACGCCCACAGTGTCATAGGTACACCAGAATTTATGGCGCCTGAATTGTACGATGAGGAATACAATGAGCTAGTAGACATATATGCCTTTGGCATGTGTGTGTTGGAAATGCTTACTTCAGAATATCCCTATAGCGAGTGCTCAAATCCTGCCCAAATTTACAAAAAAGTTACTTCAGGGAAGCTACCAAACGCATTCTACAATATTGAAGATTTGGAGGCTCAACAATTTGTAGGGAAGTGTCTGGAGAATGTTTCAAAGAGGTTGCCCGCACATGAGCTATTGCTAGACCCTTTTCTAGCCTCTGATGATGGAGAGCTAGCGTCTTCCCCAAGAATCCCAATTCTGAAGTTAATTCCTGATAATGATCCAGTCACGGAGGCAGAGGATGAGGAGGATGAGCTACATTTTGCCGCTGAGGTTGATTTGGAAAGAAGCACAAACATCGATCATCACTGGAAAAATGAATCTAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OSR1_C Pkinase

Protein Analysis

351

Amino Acids

40.01

Weight (kDa)

5.37

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51630 AT3G51630
fragaria_vesca	FvH4_6g10120
malus_domestica	MD04G1172700.v1.1 MD12G1186000.v1.1
prunus_persica	Prupe.4G073500_v2.0.a1 Prupe.6G291500_v2.0.a1
pyrus_communis	pycom04g15260 pycom12g17460
rosa_chinensis	RchiOBHm_Chr3g0460821
rosa_laevigata	RLG00000024978
rosa_multiflora	Rmu_sc0007678.1_g000013
rosa_roxburghii	Rroxscaffold_6G00419190
rosa_rugosa	Rorug03G0046600 Rorug03G0046700 Rorug03G0046800 Rorug03G0046800
rosa_samantha	Rh3AG103700 Rh3BG107400 Rh3CG109300 Rh3DG109200
rosa_wichuraiana	Rw3G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	2 cut(s)	21, 70
AccB1I	GGYRCC	1 cut(s)	610
AccI	GTMKAC	1 cut(s)	648
AciI	CCGC	3 cut(s)	319, 843, 987
AclWI	GGATC	5 cut(s)	29, 74, 311, 455, 935
AcoI	YGGCCR	1 cut(s)	511
AcsI	RAATTY	2 cut(s)	602, 729
AcuI	CTGAAG	4 cut(s)	212, 675, 732, 941
AcyI	GRCGYC	1 cut(s)	611
AfaI	GTAC	4 cut(s)	371, 568, 595, 623
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	4 cut(s)	74, 328, 782, 831
AluBI	AGCT	6 cut(s)	196, 643, 757, 853, 892, 976
AluI	AGCT	6 cut(s)	196, 643, 757, 853, 892, 976
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	5 cut(s)	29, 74, 311, 455, 935
AoxI	GGCC	2 cut(s)	50, 511
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	2 cut(s)	602, 729
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AspA2I	CCTAGG	1 cut(s)	517
AspLEI	GCGC	2 cut(s)	234, 613
AspS9I	GGNCC	3 cut(s)	160, 247, 417
AsuHPI	GGTGA	5 cut(s)	51, 207, 328, 340, 548
AsuNHI	GCTAGC	1 cut(s)	892
AvaII	GGWCC	3 cut(s)	160, 247, 417
AvrII	CCTAGG	1 cut(s)	517
BalI	TGGCCA	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
BbsI	GAAGAC	2 cut(s)	140, 891
Bbv12I	GWGCWC	1 cut(s)	716
BbvCI	CCTCAGC	1 cut(s)	990
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	3 cut(s)	91, 287, 878
BcgI	CGANNNNNNTGC	2 cut(s)	1000, 1034
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	6 cut(s)	518, 644, 860, 872, 893, 1044
BfmI	CTRYAG	1 cut(s)	703
BfoI	RGCGCY	2 cut(s)	235, 614
BfuAI	ACCTGC	2 cut(s)	21, 70
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	3 cut(s)	319, 552, 987
BlnI	CCTAGG	1 cut(s)	517
BlsI	GCNGC	3 cut(s)	320, 553, 988
Bme18I	GGWCC	3 cut(s)	160, 247, 417
BmgT120I	GGNCC	3 cut(s)	160, 247, 417
BmiI	GGNNCC	3 cut(s)	127, 419, 612
BmtI	GCTAGC	1 cut(s)	896
BpiI	GAAGAC	2 cut(s)	140, 891
BpmI	CTGGAG	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	990
BpuEI	CTTGAG	2 cut(s)	242, 470
Bsa29I	ATCGAT	2 cut(s)	306, 1020
BsaBI	GATNNNNATC	2 cut(s)	312, 939
BsaHI	GRCGYC	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	517
BsaWI	WCCGGW	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	944, 1034
Bse3DI	GCAATG	1 cut(s)	174
Bse8I	GATNNNNATC	2 cut(s)	312, 939
BseCI	ATCGAT	2 cut(s)	306, 1020
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	3 cut(s)	282, 967, 976
BseJI	GATNNNNATC	2 cut(s)	312, 939
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	376, 981
BseNI	ACTGG	2 cut(s)	944, 1034
BseRI	GAGGAG	2 cut(s)	245, 980
BseXI	GCAGC	1 cut(s)	538
BshFI	GGCC	2 cut(s)	52, 513
BshNI	GGYRCC	1 cut(s)	610
BshVI	ATCGAT	2 cut(s)	306, 1020
BsiHKAI	GWGCWC	1 cut(s)	716
BsiSI	CCGG	3 cut(s)	19, 218, 354
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	767
BsnI	GGCC	2 cut(s)	52, 513
Bso31I	GGTCTC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	716
Bsp143I	GATC	7 cut(s)	21, 79, 303, 426, 460, 940, 1021
BspACI	CCGC	3 cut(s)	319, 843, 987
BspANI	GGCC	2 cut(s)	52, 513
BspCNI	CTCAG	2 cut(s)	375, 982
BspDI	ATCGAT	2 cut(s)	306, 1020
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	127, 419, 612
BspMI	ACCTGC	2 cut(s)	21, 70
BspOI	GCTAGC	1 cut(s)	896
BspPI	GGATC	5 cut(s)	29, 74, 311, 455, 935
BspT107I	GGYRCC	1 cut(s)	610
BspTNI	GGTCTC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	944, 1034
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	7 cut(s)	21, 79, 303, 426, 460, 940, 1021
BssNI	GRCGYC	1 cut(s)	611
BssT1I	CCWWGG	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	139, 584
BstACI	GRCGYC	1 cut(s)	611
BstC8I	GCNNGC	3 cut(s)	50, 843, 894
BstDEI	CTNAG	2 cut(s)	362, 990
BstF5I	GGATG	3 cut(s)	282, 967, 976
BstH2I	RGCGCY	2 cut(s)	235, 614
BstHHI	GCGC	2 cut(s)	234, 613
BstKTI	GATC	7 cut(s)	24, 82, 306, 429, 463, 943, 1024
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	7 cut(s)	21, 79, 303, 426, 460, 940, 1021
BstNSI	RCATGY	1 cut(s)	670
BstSFI	CTRYAG	1 cut(s)	703
BstV1I	GCAGC	1 cut(s)	538
BstV2I	GAAGAC	2 cut(s)	140, 891
BstX2I	RGATCY	2 cut(s)	79, 426
BstYI	RGATCY	2 cut(s)	79, 426
Bsu15I	ATCGAT	2 cut(s)	306, 1020
BsuRI	GGCC	2 cut(s)	52, 513
BsuTUI	ATCGAT	2 cut(s)	306, 1020
BtsCI	GGATG	3 cut(s)	282, 967, 976
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	3 cut(s)	411, 589, 1027
BveI	ACCTGC	2 cut(s)	21, 70
Cac8I	GCNNGC	3 cut(s)	50, 843, 894
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	2 cut(s)	234, 613
Cfr13I	GGNCC	3 cut(s)	160, 247, 417
ClaI	ATCGAT	2 cut(s)	306, 1020
CseI	GACGC	1 cut(s)	885
Csp6I	GTAC	4 cut(s)	370, 567, 594, 622
CspCI	CAANNNNNGTGG	2 cut(s)	156, 191
CviAII	CATG	4 cut(s)	130, 272, 667, 848
CviQI	GTAC	4 cut(s)	370, 567, 594, 622
DdeI	CTNAG	2 cut(s)	362, 990
DinI	GGCGCC	1 cut(s)	612
DpnI	GATC	7 cut(s)	23, 81, 305, 428, 462, 942, 1023
DpnII	GATC	7 cut(s)	21, 79, 303, 426, 460, 940, 1021
EaeI	YGGCCR	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	517
Eco31I	GGTCTC	1 cut(s)	474
Eco47I	GGWCC	3 cut(s)	160, 247, 417
Eco57I	CTGAAG	4 cut(s)	212, 675, 732, 941
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	517
EgeI	GGCGCC	1 cut(s)	612
EheI	GGCGCC	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	4 cut(s)	133, 275, 670, 851
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	4 cut(s)	129, 271, 666, 847
FauI	CCCGC	1 cut(s)	850
FblI	GTMKAC	1 cut(s)	648
Fnu4HI	GCNGC	3 cut(s)	319, 552, 987
FokI	GGATG	3 cut(s)	269, 974, 983
Fsp4HI	GCNGC	3 cut(s)	319, 552, 987
FspBI	CTAG	6 cut(s)	518, 644, 860, 872, 893, 1044
GlaI	GCGC	2 cut(s)	233, 612
GluI	GCNGC	3 cut(s)	319, 552, 987
GsuI	CTGGAG	1 cut(s)	839
HaeII	RGCGCY	2 cut(s)	235, 614
HaeIII	GGCC	2 cut(s)	52, 513
HapII	CCGG	3 cut(s)	19, 218, 354
HgaI	GACGC	1 cut(s)	885
HhaI	GCGC	2 cut(s)	234, 613
Hin1I	GRCGYC	1 cut(s)	611
Hin1II	CATG	4 cut(s)	133, 275, 670, 851
Hin6I	GCGC	2 cut(s)	232, 611
HinP1I	GCGC	2 cut(s)	232, 611
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	5 cut(s)	184, 275, 472, 909, 1040
HpaII	CCGG	3 cut(s)	19, 218, 354
HphI	GGTGA	5 cut(s)	51, 207, 328, 340, 548
Hpy166II	GTNNAC	6 cut(s)	142, 215, 250, 348, 596, 649
Hpy188I	TCNGA	5 cut(s)	26, 365, 694, 880, 921
Hpy188III	TCNNGA	7 cut(s)	259, 272, 420, 529, 818, 932, 1044
Hpy8I	GTNNAC	6 cut(s)	142, 215, 250, 348, 596, 649
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	2 cut(s)	139, 584
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	451
HpyF3I	CTNAG	2 cut(s)	362, 990
HpySE526I	ACGT	1 cut(s)	100
Hsp92I	GRCGYC	1 cut(s)	611
Hsp92II	CATG	4 cut(s)	133, 275, 670, 851
HspAI	GCGC	2 cut(s)	232, 611
KasI	GGCGCC	1 cut(s)	610
Kzo9I	GATC	7 cut(s)	21, 79, 303, 426, 460, 940, 1021
LmnI	GCTCC	2 cut(s)	125, 401
Lsp1109I	GCAGC	1 cut(s)	538
MaeI	CTAG	6 cut(s)	518, 644, 860, 872, 893, 1044
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	3 cut(s)	491, 742, 946
MalI	GATC	7 cut(s)	23, 81, 305, 428, 462, 942, 1023
MboI	GATC	7 cut(s)	21, 79, 303, 426, 460, 940, 1021
MboII	GAAGA	4 cut(s)	145, 551, 794, 891
MflI	RGATCY	2 cut(s)	79, 426
MhlI	GDGCHC	1 cut(s)	716
MlsI	TGGCCA	1 cut(s)	513
MluCI	AATT	8 cut(s)	379, 412, 602, 617, 729, 800, 915, 927
MluNI	TGGCCA	1 cut(s)	513
Mly113I	GGCGCC	1 cut(s)	611
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	657
Mox20I	TGGCCA	1 cut(s)	513
MscI	TGGCCA	1 cut(s)	513
MseI	TTAA	4 cut(s)	198, 312, 507, 926
MslI	CAYNNNNRTG	2 cut(s)	341, 671
Msp20I	TGGCCA	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	989
MspI	CCGG	3 cut(s)	19, 218, 354
Mva1269I	GAATGC	1 cut(s)	767
NarI	GGCGCC	1 cut(s)	611
NdeII	GATC	7 cut(s)	21, 79, 303, 426, 460, 940, 1021
NheI	GCTAGC	1 cut(s)	892
NlaIII	CATG	4 cut(s)	133, 275, 670, 851
NlaIV	GGNNCC	3 cut(s)	127, 419, 612
NmuCI	GTSAC	2 cut(s)	491, 946
NspI	RCATGY	1 cut(s)	670
PagI	TCATGA	1 cut(s)	271
PaqCI	CACCTGC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PctI	GAATGC	1 cut(s)	767
PfeI	GAWTC	4 cut(s)	184, 472, 909, 1040
PkrI	GCNGC	3 cut(s)	320, 553, 988
PleI	GAGTC	1 cut(s)	269
PluTI	GGCGCC	1 cut(s)	614
PpsI	GAGTC	1 cut(s)	269
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	127, 419, 612
PspPI	GGNCC	3 cut(s)	160, 247, 417
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	79, 426
RsaI	GTAC	4 cut(s)	371, 568, 595, 623
RsaNI	GTAC	4 cut(s)	370, 567, 594, 622
RseI	CAYNNNNRTG	2 cut(s)	341, 671
SaqAI	TTAA	4 cut(s)	198, 312, 507, 926
SatI	GCNGC	3 cut(s)	319, 552, 987
Sau3AI	GATC	7 cut(s)	21, 79, 303, 426, 460, 940, 1021
Sau96I	GGNCC	3 cut(s)	160, 247, 417
SchI	GAGTC	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	716
SfcI	CTRYAG	1 cut(s)	703
SfoI	GGCGCC	1 cut(s)	612
SinI	GGWCC	3 cut(s)	160, 247, 417
SmiMI	CAYNNNNRTG	2 cut(s)	341, 671
SmlI	CTYRAG	2 cut(s)	257, 485
SmoI	CTYRAG	2 cut(s)	257, 485
Sse9I	AATT	8 cut(s)	379, 412, 602, 617, 729, 800, 915, 927
SsiI	CCGC	3 cut(s)	319, 843, 987
SspDI	GGCGCC	1 cut(s)	610
SspI	AATATT	2 cut(s)	397, 778
SspMI	CTAG	6 cut(s)	518, 644, 860, 872, 893, 1044
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	2 cut(s)	139, 584
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	306, 1020
TasI	AATT	8 cut(s)	379, 412, 602, 617, 729, 800, 915, 927
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	2 cut(s)	321, 989
TfiI	GAWTC	4 cut(s)	184, 472, 909, 1040
Tru1I	TTAA	4 cut(s)	198, 312, 507, 926
Tru9I	TTAA	4 cut(s)	198, 312, 507, 926
TscAI	CASTG	3 cut(s)	411, 589, 1034
TseFI	GTSAC	2 cut(s)	491, 946
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	2 cut(s)	491, 946
TspDTI	ATGAA	4 cut(s)	17, 146, 322, 1053
TspGWI	ACGGA	1 cut(s)	965
TspRI	CASTG	3 cut(s)	411, 589, 1034
VpaK11BI	GGWCC	3 cut(s)	160, 247, 417
XapI	RAATTY	2 cut(s)	602, 729
XbaI	TCTAGA	1 cut(s)	1043
XceI	RCATGY	1 cut(s)	670
XmaJI	CCTAGG	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	648
XspI	CTAG	6 cut(s)	518, 644, 860, 872, 893, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.