Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0022560

Physical Location & Seq

Genomic Coordinates Reverse (-)

21954091 .. 21954447

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAATTTCCGTAGCCGGTTACAAAAAAAAAACCTTTCTTTCTTTACAGAAATAATACTGGTAGATGTCCCTGAAATGAACTACACCTCCGAGGACAAGCCCCATCCTCGCGGTGAAATCTGTGTCAGGGGTCCCATCGTTTTCCAAGGCTACTACAAAGACGAGGTGCAGACGTACTTAACTTGCATCTGTTATGATTATGAAGTGATTGACGCCGATGGCTGGCTGCATACTGGAGACATTGGATTGTGGTTGCCCAGAGGCCGGTTTAAGATCATCGATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010193 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0032787 GO:0042221 GO:0042493 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

96

Amino Acids

11.24

Weight (kDa)

5.6

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022560)

Species	Orthologous Gene IDs
pyrus_communis	pycom12g20440
rosa_laevigata	RLG00000035023
rosa_multiflora	Rmu_co8100376.1_g000001 Rmu_sc0002169.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	222, 264
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
Alw26I	GTCTC	1 cut(s)	231
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	3 cut(s)	111, 143, 212
BcoDI	GTCTC	1 cut(s)	231
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	132, 133
BmsI	GCATC	1 cut(s)	195
BpmI	CTGGAG	1 cut(s)	255
Bsa29I	ATCGAT	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	90, 145
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 264
Bse118I	RCCGGY	2 cut(s)	15, 264
Bse1I	ACTGG	2 cut(s)	63, 238
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	90, 145
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	222, 264
BseNI	ACTGG	2 cut(s)	63, 238
BseXI	GCAGC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	111
Bsh1285I	CGRYCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	264
BshVI	ATCGAT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	16, 265
BslFI	GGGAC	2 cut(s)	53, 117
BslI	CCNNNNNNNGG	2 cut(s)	222, 264
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	53, 117
BsnI	GGCC	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	273, 280
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	264
BspDI	ATCGAT	1 cut(s)	279
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	132, 133
BsrFI	RCCGGY	2 cut(s)	15, 264
BsrI	ACTGG	2 cut(s)	63, 238
BssAI	RCCGGY	2 cut(s)	15, 264
BssECI	CCNNGG	2 cut(s)	90, 145
BssMI	GATC	2 cut(s)	273, 280
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	224
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	276, 283
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	2 cut(s)	273, 280
BstMCI	CGRYCG	1 cut(s)	283
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	264
BsuTUI	ATCGAT	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	224
Cfr10I	RCCGGY	2 cut(s)	15, 264
Cfr13I	GGNCC	1 cut(s)	131
ClaI	ATCGAT	1 cut(s)	279
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	175
CviJI	RGCY	6 cut(s)	15, 100, 150, 222, 226, 264
CviKI_1	RGCY	6 cut(s)	15, 100, 150, 222, 226, 264
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	2 cut(s)	275, 282
DpnII	GATC	2 cut(s)	273, 280
Eco130I	CCWWGG	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	145
FaiI	YATR	3 cut(s)	195, 201, 231
FaqI	GGGAC	2 cut(s)	53, 117
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	2 cut(s)	16, 265
HgaI	GACGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	213
HpaII	CCGG	2 cut(s)	16, 265
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	3 cut(s)	169, 186, 229
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	213
KflI	GGGWCCC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	273, 280
LpnPI	CCDG	8 cut(s)	29, 44, 84, 112, 208, 219, 271, 278
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	2 cut(s)	275, 282
MboI	GATC	2 cut(s)	273, 280
MluCI	AATT	1 cut(s)	4
MnlI	CCTC	5 cut(s)	85, 97, 117, 157, 254
MseI	TTAA	2 cut(s)	179, 270
MspI	CCGG	2 cut(s)	16, 265
MvnI	CGCG	1 cut(s)	111
NdeII	GATC	2 cut(s)	273, 280
NlaIV	GGNNCC	2 cut(s)	132, 133
PkrI	GCNGC	1 cut(s)	228
Ple19I	CGATCG	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	132, 133
PspPI	GGNCC	1 cut(s)	131
PspPPI	RGGWCCY	1 cut(s)	131
PvuI	CGATCG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	179, 270
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	2 cut(s)	273, 280
Sau96I	GGNCC	1 cut(s)	131
SetI	ASST	4 cut(s)	36, 89, 168, 176
SfaNI	GCATC	1 cut(s)	195
SinI	GGWCC	1 cut(s)	131
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	145
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	279
TasI	AATT	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	179, 270
Tru9I	TTAA	2 cut(s)	179, 270
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	17, 92, 216
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.